Wall clock time and date at job start Mon Mar 30 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31642 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48505 * 109.47173 * 239.99923 * 3 2 1 5 5 H 1.48499 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47357 * 119.99977 * 3 2 1 7 7 C 1.38752 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99580 * 198.34420 * 7 2 1 9 9 N 1.36772 * 120.00332 * 18.34156 * 7 2 1 10 10 C 1.40051 * 119.99505 * 45.93399 * 9 7 2 11 11 C 1.40444 * 126.13536 * 180.02562 * 10 9 7 12 12 N 1.30793 * 108.20330 * 179.97438 * 11 10 9 13 13 N 1.40052 * 108.40990 * 359.76184 * 12 11 10 14 14 H 0.97000 * 125.97450 * 180.25298 * 13 12 11 15 15 C 1.35207 * 108.04519 * 0.38776 * 13 12 11 16 16 C 1.46496 * 120.00202 * 225.93740 * 9 7 2 17 17 C 1.54264 * 110.03204 * 59.01998 * 16 9 7 18 18 C 1.54897 * 104.19429 * 217.10287 * 17 16 9 19 19 C 1.54888 * 102.74563 * 37.94569 * 18 17 16 20 20 C 1.53877 * 110.03038 * 301.85065 * 16 9 7 21 21 H 0.96992 * 120.00075 * 354.71251 * 1 2 3 22 22 H 1.08002 * 125.90164 * 359.97438 * 11 10 9 23 23 H 1.07999 * 126.18639 * 179.87813 * 15 13 12 24 24 H 1.08999 * 110.01681 * 180.46079 * 16 9 7 25 25 H 1.09001 * 110.48912 * 335.78015 * 17 16 9 26 26 H 1.09004 * 110.48984 * 98.42868 * 17 16 9 27 27 H 1.08996 * 110.75557 * 279.63111 * 18 17 16 28 28 H 1.08994 * 110.91333 * 156.32900 * 18 17 16 29 29 H 1.09003 * 110.48389 * 203.37875 * 19 18 17 30 30 H 1.08993 * 110.60216 * 80.78717 * 19 18 17 31 31 H 1.08998 * 110.02876 * 238.56909 * 20 16 9 32 32 H 1.08996 * 110.03103 * 359.95505 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6964 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1042 1.6965 1.2124 7 6 2.0102 -1.2016 0.0005 8 1 3.0490 -1.2252 0.2949 9 7 1.3785 -2.3562 -0.3717 10 6 0.5806 -2.3781 -1.5225 11 6 -0.1234 -3.4863 -2.0211 12 7 -0.7504 -3.1168 -3.1079 13 7 -0.4749 -1.7632 -3.3388 14 1 -0.8136 -1.2303 -4.0753 15 6 0.3479 -1.3298 -2.3574 16 6 1.5365 -3.5699 0.4334 17 6 1.0486 -3.3153 1.8746 18 6 2.0378 -4.1161 2.7575 19 6 3.3900 -3.9070 2.0317 20 6 3.0252 -3.9461 0.5332 21 1 -0.4850 0.8364 0.0774 22 1 -0.1437 -4.4732 -1.5829 23 1 0.7449 -0.3309 -2.2529 24 1 0.9733 -4.3896 -0.0128 25 1 1.0992 -2.2527 2.1123 26 1 0.0328 -3.6884 2.0050 27 1 1.7695 -5.1723 2.7777 28 1 2.0747 -3.7090 3.7679 29 1 4.0829 -4.7120 2.2767 30 1 3.8208 -2.9409 2.2942 31 1 3.1843 -4.9487 0.1362 32 1 3.6300 -3.2261 -0.0180 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261138535.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:53 Heat of formation + Delta-G solvation = 84.666012 kcal Electronic energy + Delta-G solvation = -15563.376565 eV Core-core repulsion = 13139.705939 eV Total energy + Delta-G solvation = -2423.670626 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72959 -37.64239 -34.26544 -31.50253 -29.82808 -27.95823 -27.86551 -26.38753 -23.71182 -20.84817 -19.93443 -19.47264 -18.86085 -17.35259 -15.84753 -15.08764 -14.73827 -14.23007 -13.53200 -13.28203 -13.21926 -12.88377 -12.56832 -11.72703 -11.43668 -11.19344 -10.88560 -10.57591 -10.51862 -10.42439 -10.30791 -10.20948 -9.92697 -9.77840 -9.44010 -8.72546 -8.33164 -8.26911 -6.19457 -5.47330 -3.62695 3.20373 3.24789 3.31741 3.33991 4.07625 4.31651 4.46199 5.14260 5.22926 5.41525 5.46103 5.67954 6.04141 6.14510 6.26981 6.31957 6.40393 6.44259 6.49505 6.56710 6.59368 6.80827 6.93532 6.98274 7.13735 7.29949 7.44161 7.68996 7.73024 8.43023 8.60984 8.92254 9.15130 9.68531 10.23037 11.00873 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.015474 C = 0.009722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.903933 B = 1808.994977 C = 2879.434284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.030 3.970 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.288 4.288 8 H 0.069 0.931 9 N -0.471 5.471 10 C 0.104 3.896 11 C -0.018 4.018 12 N -0.317 5.317 13 N -0.491 5.491 14 H 0.424 0.576 15 C -0.012 4.012 16 C 0.162 3.838 17 C -0.126 4.126 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.132 4.132 21 H 0.260 0.740 22 H 0.160 0.840 23 H 0.160 0.840 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.070 -4.142 0.886 5.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.175 4.175 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.417 4.417 8 H 0.087 0.913 9 N -0.175 5.175 10 C -0.006 4.006 11 C -0.206 4.206 12 N -0.144 5.144 13 N -0.205 5.205 14 H 0.265 0.735 15 C -0.162 4.162 16 C 0.056 3.944 17 C -0.165 4.165 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.171 4.171 21 H 0.070 0.930 22 H 0.177 0.823 23 H 0.177 0.823 24 H 0.076 0.924 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.274 -4.392 0.094 4.947 hybrid contribution 0.657 1.611 0.541 1.822 sum 2.931 -2.781 0.635 4.090 Atomic orbital electron populations 1.70126 1.05556 1.26544 1.47052 1.25435 0.95019 0.98935 0.98079 0.86548 0.79497 0.83058 0.78839 1.20292 1.21401 1.20253 1.18782 0.93802 0.83911 1.45220 0.91322 1.41155 1.49599 1.07307 1.19405 1.17633 1.00114 0.91987 0.90877 1.23253 1.01647 0.99174 0.96485 1.76763 1.24951 0.93020 1.19624 1.45470 1.42232 1.08369 1.24445 0.73541 1.21473 1.02397 0.99597 0.92704 1.21260 0.93471 0.88604 0.91114 1.22708 0.96714 1.01923 0.95159 1.22440 0.96162 0.99239 0.98324 1.22248 0.96660 1.00605 0.95943 1.22528 0.98695 1.00099 0.95824 0.93010 0.82273 0.82266 0.92430 0.89395 0.93355 0.92707 0.92683 0.93229 0.91849 0.93285 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.12 11.43 55.49 0.63 -22.49 16 2 C 0.03 0.76 3.52 -17.44 -0.06 0.70 16 3 Si 0.89 19.97 29.60 -169.99 -5.03 14.94 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.29 -7.27 7.36 -15.16 -0.11 -7.38 16 8 H 0.07 1.73 7.10 -52.49 -0.37 1.36 16 9 N -0.47 -11.31 2.54 -105.16 -0.27 -11.58 16 10 C 0.10 2.53 6.06 -84.07 -0.51 2.02 16 11 C -0.02 -0.40 11.20 -17.16 -0.19 -0.59 16 12 N -0.32 -7.07 12.68 30.74 0.39 -6.68 16 13 N -0.49 -10.39 7.36 30.63 0.23 -10.17 16 14 H 0.42 7.29 8.96 -182.63 -1.64 5.65 16 15 C -0.01 -0.28 9.72 -16.86 -0.16 -0.45 16 16 C 0.16 3.31 3.34 -66.81 -0.22 3.08 16 17 C -0.13 -2.49 6.41 -25.07 -0.16 -2.65 16 18 C -0.12 -1.98 6.91 -24.73 -0.17 -2.15 16 19 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 20 C -0.13 -2.39 6.21 -25.61 -0.16 -2.55 16 21 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 22 H 0.16 3.13 6.89 -52.49 -0.36 2.76 16 23 H 0.16 3.94 6.23 -52.49 -0.33 3.62 16 24 H 0.06 1.12 6.17 -51.93 -0.32 0.80 16 25 H 0.09 2.04 7.08 -51.93 -0.37 1.67 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.44 6.87 -51.93 -0.36 1.09 16 LS Contribution 258.96 15.07 3.90 3.90 Total: -1.00 -28.26 258.96 -7.48 -35.74 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.41 Total: 8.34 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.92 Total: -12.01 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.98 Total: -50.91 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.26 -7.48 -35.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138535.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.407 kcal (2) G-P(sol) polarization free energy of solvation -28.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds