Wall clock time and date at job start Mon Mar 30 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31642 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48505 * 109.47173 * 239.99923 * 3 2 1 5 5 H 1.48499 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47357 * 119.99977 * 3 2 1 7 7 C 1.38752 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99580 * 198.34420 * 7 2 1 9 9 N 1.36772 * 120.00332 * 18.34156 * 7 2 1 10 10 C 1.40051 * 119.99505 * 45.93399 * 9 7 2 11 11 C 1.40444 * 126.13536 * 180.02562 * 10 9 7 12 12 N 1.30793 * 108.20330 * 179.97438 * 11 10 9 13 13 N 1.40052 * 108.40990 * 359.76184 * 12 11 10 14 14 H 0.97000 * 125.97450 * 180.25298 * 13 12 11 15 15 C 1.35207 * 108.04519 * 0.38776 * 13 12 11 16 16 C 1.46496 * 120.00202 * 225.93740 * 9 7 2 17 17 C 1.54264 * 110.03204 * 59.01998 * 16 9 7 18 18 C 1.54897 * 104.19429 * 217.10287 * 17 16 9 19 19 C 1.54888 * 102.74563 * 37.94569 * 18 17 16 20 20 C 1.53877 * 110.03038 * 301.85065 * 16 9 7 21 21 H 0.96992 * 120.00075 * 354.71251 * 1 2 3 22 22 H 1.08002 * 125.90164 * 359.97438 * 11 10 9 23 23 H 1.07999 * 126.18639 * 179.87813 * 15 13 12 24 24 H 1.08999 * 110.01681 * 180.46079 * 16 9 7 25 25 H 1.09001 * 110.48912 * 335.78015 * 17 16 9 26 26 H 1.09004 * 110.48984 * 98.42868 * 17 16 9 27 27 H 1.08996 * 110.75557 * 279.63111 * 18 17 16 28 28 H 1.08994 * 110.91333 * 156.32900 * 18 17 16 29 29 H 1.09003 * 110.48389 * 203.37875 * 19 18 17 30 30 H 1.08993 * 110.60216 * 80.78717 * 19 18 17 31 31 H 1.08998 * 110.02876 * 238.56909 * 20 16 9 32 32 H 1.08996 * 110.03103 * 359.95505 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6964 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1042 1.6965 1.2124 7 6 2.0102 -1.2016 0.0005 8 1 3.0490 -1.2252 0.2949 9 7 1.3785 -2.3562 -0.3717 10 6 0.5806 -2.3781 -1.5225 11 6 -0.1234 -3.4863 -2.0211 12 7 -0.7504 -3.1168 -3.1079 13 7 -0.4749 -1.7632 -3.3388 14 1 -0.8136 -1.2303 -4.0753 15 6 0.3479 -1.3298 -2.3574 16 6 1.5365 -3.5699 0.4334 17 6 1.0486 -3.3153 1.8746 18 6 2.0378 -4.1161 2.7575 19 6 3.3900 -3.9070 2.0317 20 6 3.0252 -3.9461 0.5332 21 1 -0.4850 0.8364 0.0774 22 1 -0.1437 -4.4732 -1.5829 23 1 0.7449 -0.3309 -2.2529 24 1 0.9733 -4.3896 -0.0128 25 1 1.0992 -2.2527 2.1123 26 1 0.0328 -3.6884 2.0050 27 1 1.7695 -5.1723 2.7777 28 1 2.0747 -3.7090 3.7679 29 1 4.0829 -4.7120 2.2767 30 1 3.8208 -2.9409 2.2942 31 1 3.1843 -4.9487 0.1362 32 1 3.6300 -3.2261 -0.0180 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138535.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:53 Heat of formation + Delta-G solvation = 68.002474 kcal Electronic energy + Delta-G solvation = -15564.099150 eV Core-core repulsion = 13139.705939 eV Total energy + Delta-G solvation = -2424.393211 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.50026 -39.20217 -35.98718 -33.35919 -31.60806 -29.62068 -29.33018 -28.13967 -25.51595 -22.62250 -21.30294 -21.21923 -20.53384 -19.18445 -17.61606 -16.78040 -16.39197 -15.86260 -15.18323 -15.02833 -15.00128 -14.49257 -14.05730 -13.48699 -13.24267 -13.00518 -12.59738 -12.33208 -12.12898 -11.95213 -11.76264 -11.70799 -11.51910 -11.29672 -11.09757 -10.56072 -10.19798 -10.04402 -8.14832 -7.34210 -5.58171 1.41231 1.44794 1.48527 1.53865 2.35724 2.51142 2.62798 3.23866 3.53901 3.99423 4.05125 4.32189 4.40290 4.63359 4.74077 4.80995 4.94455 4.96586 5.00118 5.15918 5.21147 5.25375 5.33826 5.47029 5.61076 5.65162 5.73865 5.76422 5.95292 6.47484 6.92436 7.15870 7.22260 7.86381 8.32830 9.05331 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.015474 C = 0.009722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.903933 B = 1808.994977 C = 2879.434284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C -0.006 4.006 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.289 4.289 8 H 0.064 0.936 9 N -0.483 5.483 10 C 0.080 3.920 11 C -0.021 4.021 12 N -0.317 5.317 13 N -0.480 5.480 14 H 0.440 0.560 15 C -0.026 4.026 16 C 0.151 3.849 17 C -0.125 4.125 18 C -0.112 4.112 19 C -0.112 4.112 20 C -0.127 4.127 21 H 0.255 0.745 22 H 0.186 0.814 23 H 0.147 0.853 24 H 0.068 0.932 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.786 -5.418 1.225 6.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.208 4.208 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.419 4.419 8 H 0.082 0.918 9 N -0.187 5.187 10 C -0.030 4.030 11 C -0.209 4.209 12 N -0.143 5.143 13 N -0.196 5.196 14 H 0.284 0.716 15 C -0.176 4.176 16 C 0.045 3.955 17 C -0.164 4.164 18 C -0.150 4.150 19 C -0.150 4.150 20 C -0.166 4.166 21 H 0.064 0.936 22 H 0.202 0.798 23 H 0.164 0.836 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.002 -5.673 0.421 6.432 hybrid contribution 0.423 1.960 0.407 2.046 sum 3.424 -3.713 0.828 5.119 Atomic orbital electron populations 1.70240 1.06797 1.26657 1.48789 1.25950 0.95480 1.01326 0.98033 0.85670 0.78257 0.79734 0.78793 1.19991 1.21823 1.19900 1.18896 0.93703 0.84869 1.44428 0.91836 1.41362 1.49476 1.07991 1.19867 1.18021 1.00763 0.92926 0.91324 1.23605 1.01064 0.99869 0.96328 1.76718 1.24673 0.93345 1.19568 1.45454 1.41555 1.08188 1.24429 0.71634 1.21363 1.03339 0.99204 0.93711 1.21546 0.95399 0.87570 0.90938 1.22600 0.97851 0.99968 0.95931 1.22398 0.94593 1.00070 0.97917 1.22228 0.97287 1.01108 0.94351 1.22452 0.96329 1.00617 0.97175 0.93596 0.79764 0.83593 0.91434 0.93516 0.93619 0.90095 0.91643 0.90015 0.93316 0.90855 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.81 11.43 21.64 0.25 -48.57 16 2 C -0.01 -0.32 3.52 84.84 0.30 -0.02 16 3 Si 0.95 41.60 29.60 68.60 2.03 43.63 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.29 -14.78 7.36 84.05 0.62 -14.17 16 8 H 0.06 3.26 7.10 -2.91 -0.02 3.24 16 9 N -0.48 -23.24 2.54 -486.61 -1.24 -24.48 16 10 C 0.08 3.87 6.06 37.85 0.23 4.10 16 11 C -0.02 -0.91 11.20 85.39 0.96 0.04 16 12 N -0.32 -13.68 12.68 -56.66 -0.72 -14.40 16 13 N -0.48 -19.97 7.36 -57.01 -0.42 -20.39 16 14 H 0.44 14.74 8.96 -213.35 -1.91 12.82 16 15 C -0.03 -1.24 9.72 83.66 0.81 -0.42 16 16 C 0.15 6.01 3.34 45.72 0.15 6.16 16 17 C -0.12 -4.83 6.41 31.67 0.20 -4.63 16 18 C -0.11 -3.28 6.91 31.89 0.22 -3.06 16 19 C -0.11 -3.31 6.83 31.67 0.22 -3.09 16 20 C -0.13 -4.33 6.21 31.32 0.19 -4.14 16 21 H 0.25 13.71 8.32 -92.71 -0.77 12.94 16 22 H 0.19 6.85 6.89 -2.91 -0.02 6.83 16 23 H 0.15 7.37 6.23 -2.91 -0.02 7.35 16 24 H 0.07 2.52 6.17 -2.39 -0.01 2.50 16 25 H 0.05 2.19 7.08 -2.39 -0.02 2.18 16 26 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.05 1.90 6.87 -2.39 -0.02 1.89 16 Total: -1.00 -60.00 258.96 3.02 -56.99 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -0.79 Total: 26.44 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 3.90 Total: -19.22 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -2.13 Total: -107.83 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -60.00 3.02 -56.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138535.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.988 kcal (2) G-P(sol) polarization free energy of solvation -60.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds