Wall clock time and date at job start Mon Mar 30 2020 02:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47036 * 2 1 4 4 C 1.46899 * 110.99958 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47207 * 35.00336 * 4 3 2 6 6 C 1.50696 * 109.47221 * 275.00003 * 4 3 2 7 7 H 1.08002 * 119.99825 * 303.87637 * 6 4 3 8 8 C 1.37875 * 120.00072 * 123.87739 * 6 4 3 9 9 N 1.31516 * 120.00331 * 172.89275 * 8 6 4 10 10 Si 1.86804 * 119.99844 * 352.88492 * 8 6 4 11 11 H 1.48501 * 109.46851 * 85.60156 * 10 8 6 12 12 H 1.48500 * 109.47026 * 205.59724 * 10 8 6 13 13 H 1.48497 * 109.47053 * 325.60014 * 10 8 6 14 14 C 1.50703 * 109.46814 * 155.00020 * 4 3 2 15 15 C 1.38280 * 119.97221 * 45.97152 * 14 4 3 16 16 C 1.38245 * 120.11288 * 180.02562 * 15 14 4 17 17 C 1.38171 * 120.05462 * 359.95336 * 16 15 14 18 18 C 1.38716 * 119.94185 * 0.02562 * 17 16 15 19 19 O 1.35900 * 120.05285 * 180.02562 * 18 17 16 20 20 C 1.38128 * 119.96772 * 225.69294 * 14 4 3 21 21 H 1.08995 * 109.47589 * 59.99848 * 1 2 3 22 22 H 1.09001 * 109.47083 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46878 * 299.99493 * 1 2 3 24 24 H 1.08995 * 109.47589 * 120.00152 * 2 1 3 25 25 H 1.08999 * 109.47040 * 240.00072 * 2 1 3 26 26 H 1.00906 * 111.00053 * 303.95639 * 3 2 1 27 27 H 0.96996 * 120.00243 * 180.02562 * 9 8 6 28 28 H 1.08002 * 119.94573 * 359.97438 * 15 14 4 29 29 H 1.07994 * 119.97749 * 179.97438 * 16 15 14 30 30 H 1.07996 * 120.03049 * 180.02562 * 17 16 15 31 31 H 0.96692 * 114.00280 * 89.99876 * 19 18 17 32 32 H 1.07993 * 120.03331 * 0.02562 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8736 0.5925 -0.5904 6 6 3.9942 1.3136 1.4145 7 1 3.6640 2.0190 2.1627 8 6 4.8787 0.3120 1.7541 9 7 5.4283 0.2970 2.9488 10 14 5.2963 -1.0242 0.5171 11 1 6.4006 -0.5590 -0.3600 12 1 5.7203 -2.2512 1.2382 13 1 4.1000 -1.3244 -0.3099 14 6 3.9556 2.7250 -0.6011 15 6 3.3691 3.9155 -0.2126 16 6 3.7953 5.1103 -0.7620 17 6 4.8095 5.1178 -1.7003 18 6 5.3997 3.9250 -2.0913 19 8 6.3978 3.9297 -3.0136 20 6 4.9735 2.7275 -1.5348 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.6441 1.9013 -0.7814 27 1 6.0508 -0.4074 3.1875 28 1 2.5761 3.9117 0.5206 29 1 3.3354 6.0387 -0.4573 30 1 5.1424 6.0515 -2.1289 31 1 7.2833 4.0146 -2.6345 32 1 5.4340 1.7979 -1.8348 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:02 Heat of formation + Delta-G solvation = -44.830122 kcal Electronic energy + Delta-G solvation = -14933.250079 eV Core-core repulsion = 12471.671328 eV Total energy + Delta-G solvation = -2461.578751 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.67506 -38.40402 -36.81773 -34.64952 -33.00158 -30.96536 -29.82897 -28.20594 -24.61664 -23.53584 -22.64539 -21.70205 -19.30532 -18.68279 -17.28902 -16.70931 -16.50940 -16.28598 -15.95147 -15.31128 -14.98495 -14.63911 -14.49784 -14.09619 -13.35026 -13.08311 -12.98311 -12.66131 -12.55972 -12.34995 -12.18320 -12.11043 -11.81845 -11.58978 -11.22511 -10.78831 -9.68654 -9.38060 -9.05459 -8.33693 -6.34688 0.43859 0.51368 1.24682 1.26973 1.35021 2.25691 2.76096 3.06000 3.31636 3.65132 4.06005 4.14454 4.27967 4.33250 4.46706 4.56582 4.69107 4.70619 4.74872 4.99216 5.10004 5.12477 5.24694 5.35905 5.49447 5.53586 5.59578 5.83527 6.02744 6.09874 6.46291 6.67849 6.87095 6.92504 7.29132 8.83133 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.011359 C = 0.009029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.839991 B = 2464.465679 C = 3100.494069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.056 3.944 3 N -0.681 5.681 4 C 0.218 3.782 5 H 0.010 0.990 6 C -0.478 4.478 7 H 0.037 0.963 8 C 0.019 3.981 9 N -0.940 5.940 10 Si 0.926 3.074 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.251 1.251 14 C -0.053 4.053 15 C -0.120 4.120 16 C -0.100 4.100 17 C -0.159 4.159 18 C 0.099 3.901 19 O -0.509 6.509 20 C -0.174 4.174 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.014 0.986 26 H 0.329 0.671 27 H 0.266 0.734 28 H 0.122 0.878 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.406 0.594 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 5.354 -10.567 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.073 4.073 3 N -0.313 5.313 4 C 0.110 3.890 5 H 0.028 0.972 6 C -0.517 4.517 7 H 0.056 0.944 8 C -0.179 4.179 9 N -0.581 5.581 10 Si 0.751 3.249 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.175 1.175 14 C -0.055 4.055 15 C -0.139 4.139 16 C -0.117 4.117 17 C -0.177 4.177 18 C 0.054 3.946 19 O -0.321 6.321 20 C -0.193 4.193 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.033 0.967 26 H 0.146 0.854 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.264 0.736 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.726 5.248 -10.165 12.032 hybrid contribution 1.230 -1.218 -0.437 1.785 sum -2.496 4.031 -10.602 11.614 Atomic orbital electron populations 1.21686 0.92873 1.02280 1.02419 1.21865 0.96864 0.89833 0.98741 1.60769 1.08499 1.13527 1.48460 1.18534 0.86052 0.90362 0.94028 0.97193 1.20928 1.23843 1.12974 0.93943 0.94419 1.25811 0.95475 0.99803 0.96811 1.70026 1.30893 1.34904 1.22228 0.86071 0.79494 0.79543 0.79777 1.19305 1.21071 1.17522 1.20275 0.95206 0.97017 0.92969 1.21087 1.00908 0.91819 1.00048 1.21337 0.96370 0.98311 0.95727 1.21534 0.99218 0.97669 0.99305 1.18454 0.92693 0.92239 0.91177 1.84711 1.18178 1.96022 1.33216 1.21318 1.00445 0.98353 0.99224 0.91689 0.91088 0.92413 0.93554 0.96749 0.85351 0.92454 0.86004 0.82818 0.83123 0.73585 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 10.17 71.98 0.73 -3.11 16 2 C 0.06 2.14 6.20 86.30 0.54 2.67 16 3 N -0.68 -27.88 5.84 -499.36 -2.92 -30.79 16 4 C 0.22 10.19 2.18 43.42 0.09 10.28 16 5 H 0.01 0.50 4.14 -2.38 -0.01 0.49 16 6 C -0.48 -27.08 8.84 25.60 0.23 -26.86 16 7 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 8 C 0.02 1.12 5.47 84.65 0.46 1.58 16 9 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 10 Si 0.93 44.18 27.04 68.60 1.85 46.03 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.25 -11.25 6.68 99.48 0.66 -10.59 16 14 C -0.05 -2.24 4.64 -19.88 -0.09 -2.34 16 15 C -0.12 -4.47 9.08 22.28 0.20 -4.27 16 16 C -0.10 -2.97 10.04 22.26 0.22 -2.74 16 17 C -0.16 -4.58 9.99 22.37 0.22 -4.36 16 18 C 0.10 3.27 6.71 22.51 0.15 3.42 16 19 O -0.51 -14.38 13.50 -92.43 -1.25 -15.63 16 20 C -0.17 -6.85 9.61 22.37 0.21 -6.64 16 21 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.05 2.03 8.00 -2.39 -0.02 2.01 16 25 H 0.01 0.54 8.05 -2.39 -0.02 0.52 16 26 H 0.33 11.78 8.15 -89.69 -0.73 11.05 16 27 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.12 4.63 7.90 -2.91 -0.02 4.61 16 29 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 30 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 31 H 0.41 7.67 9.06 -74.06 -0.67 6.99 16 32 H 0.11 4.27 7.99 -2.91 -0.02 4.25 16 Total: -1.00 -67.55 274.36 0.65 -66.90 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -0.32 Total: 23.85 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 2.97 Total: -32.36 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -2.62 Total: -88.79 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -1.25 Total: -15.63 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.85 Total: 46.03 kcal Total: -67.55 0.65 -66.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.073 kcal (2) G-P(sol) polarization free energy of solvation -67.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds