Wall clock time and date at job start Mon Mar 30 2020 02:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46894 * 109.47074 * 2 1 4 4 C 1.46894 * 111.00272 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47008 * 325.00200 * 4 3 2 6 6 C 1.50694 * 109.47315 * 84.99941 * 4 3 2 7 7 H 1.07996 * 120.00098 * 33.84790 * 6 4 3 8 8 C 1.37881 * 120.00190 * 213.57732 * 6 4 3 9 9 N 1.31516 * 119.99839 * 354.69843 * 8 6 4 10 10 Si 1.86798 * 120.00267 * 174.69905 * 8 6 4 11 11 H 1.48508 * 109.47051 * 89.99716 * 10 8 6 12 12 H 1.48496 * 109.47447 * 209.99897 * 10 8 6 13 13 H 1.48500 * 109.46892 * 330.00086 * 10 8 6 14 14 C 1.50708 * 109.47407 * 205.00110 * 4 3 2 15 15 C 1.38290 * 119.96967 * 313.92968 * 14 4 3 16 16 C 1.38239 * 120.10790 * 179.72516 * 15 14 4 17 17 C 1.38169 * 120.05672 * 0.54715 * 16 15 14 18 18 C 1.38709 * 119.94344 * 359.72536 * 17 16 15 19 19 O 1.35899 * 120.05577 * 179.97438 * 18 17 16 20 20 C 1.38116 * 119.97180 * 134.20280 * 14 4 3 21 21 H 1.09000 * 109.47224 * 299.99209 * 1 2 3 22 22 H 1.09000 * 109.47520 * 60.00230 * 1 2 3 23 23 H 1.09007 * 109.47015 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46862 * 239.99912 * 2 1 3 25 25 H 1.08996 * 109.47131 * 120.00081 * 2 1 3 26 26 H 1.00901 * 111.00024 * 303.95965 * 3 2 1 27 27 H 0.96998 * 120.00158 * 179.97438 * 9 8 6 28 28 H 1.08001 * 119.94032 * 359.97438 * 15 14 4 29 29 H 1.08003 * 119.97287 * 180.25553 * 16 15 14 30 30 H 1.08000 * 120.02815 * 179.70524 * 17 16 15 31 31 H 0.96702 * 113.99734 * 270.02871 * 19 18 17 32 32 H 1.08006 * 120.03017 * 0.02562 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8740 0.5923 0.5885 6 6 3.9930 1.3141 -1.4162 7 1 3.4284 1.7513 -2.2264 8 6 5.1785 0.6599 -1.6764 9 7 5.9207 0.2235 -0.6822 10 14 5.7306 0.3936 -3.4409 11 1 6.5579 1.5461 -3.8800 12 1 6.5334 -0.8528 -3.5257 13 1 4.5395 0.2760 -4.3198 14 6 3.9561 2.7248 0.5999 15 6 3.3707 3.9157 0.2107 16 6 3.7939 5.1098 0.7639 17 6 4.8111 5.1173 1.6990 18 6 5.4038 3.9247 2.0868 19 8 6.4048 3.9294 3.0059 20 6 4.9733 2.7269 1.5342 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6441 1.9013 -0.7813 27 1 6.7545 -0.2370 -0.8652 28 1 2.5787 3.9123 -0.5236 29 1 3.3323 6.0382 0.4614 30 1 5.1446 6.0509 2.1273 31 1 7.2890 4.0160 2.6240 32 1 5.4336 1.7970 1.8342 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143114.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:05 Heat of formation + Delta-G solvation = -29.682993 kcal Electronic energy + Delta-G solvation = -14902.974432 eV Core-core repulsion = 12442.052510 eV Total energy + Delta-G solvation = -2460.921922 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.90736 -36.63395 -35.15910 -32.78533 -30.95143 -29.27265 -28.20126 -25.78640 -23.00061 -21.86908 -21.03882 -20.04453 -17.37341 -16.63224 -15.61256 -15.03056 -14.62412 -14.49039 -14.25560 -13.55729 -13.35995 -12.88781 -12.55177 -11.74503 -11.53168 -11.49786 -11.20294 -11.04165 -10.92285 -10.78499 -10.57460 -10.53439 -10.08443 -9.64851 -9.48944 -8.64609 -7.90141 -7.67027 -7.29744 -6.17118 -4.28949 2.15920 2.32015 3.19360 3.26739 3.29346 4.26973 4.55559 4.94182 5.13169 5.37170 5.69137 5.75638 5.78701 5.94985 6.09659 6.24084 6.33137 6.46194 6.54305 6.60220 6.77581 6.81763 6.96323 7.15132 7.25098 7.38529 7.61153 7.65880 7.85398 7.99126 8.12244 8.33632 8.58572 8.84491 9.38398 10.84696 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.011677 C = 0.008434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.486237 B = 2397.393670 C = 3319.067298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 N -0.690 5.690 4 C 0.229 3.771 5 H 0.070 0.930 6 C -0.540 4.540 7 H 0.058 0.942 8 C 0.073 3.927 9 N -0.879 5.879 10 Si 0.892 3.108 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.007 3.993 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.178 4.178 18 C 0.088 3.912 19 O -0.507 6.507 20 C -0.132 4.132 21 H 0.054 0.946 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.032 0.968 25 H 0.059 0.941 26 H 0.325 0.675 27 H 0.265 0.735 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.380 0.620 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 3.956 1.449 5.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.067 4.067 3 N -0.319 5.319 4 C 0.121 3.879 5 H 0.088 0.912 6 C -0.578 4.578 7 H 0.077 0.923 8 C -0.132 4.132 9 N -0.515 5.515 10 Si 0.719 3.281 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.005 3.995 15 C -0.137 4.137 16 C -0.136 4.136 17 C -0.197 4.197 18 C 0.044 3.956 19 O -0.316 6.316 20 C -0.151 4.151 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.141 0.859 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.234 0.766 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.532 3.834 2.595 5.823 hybrid contribution 1.224 -0.297 -2.290 2.613 sum -2.308 3.538 0.305 4.235 Atomic orbital electron populations 1.21786 0.96775 1.00429 1.01445 1.21671 0.93342 0.91360 1.00309 1.60934 1.10635 1.12032 1.48315 1.18362 0.83114 0.91165 0.95301 0.91209 1.21635 1.07646 1.36358 0.92199 0.92343 1.24997 0.96241 0.94742 0.97250 1.69916 1.13081 1.37677 1.30864 0.86595 0.78802 0.77799 0.84884 1.20506 1.21017 1.19804 1.20349 0.92133 0.96883 0.90118 1.20857 1.00469 0.91912 1.00433 1.20826 0.97531 0.97706 0.97576 1.21031 1.00905 0.96774 1.00987 1.18487 0.92263 0.92780 0.92074 1.84764 1.17014 1.96138 1.33709 1.21305 0.99275 0.97354 0.97138 0.92647 0.93451 0.93293 0.94988 0.92293 0.85878 0.92548 0.86958 0.87169 0.87174 0.76552 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.17 37.16 0.38 -1.84 16 2 C 0.06 1.20 6.20 -3.83 -0.02 1.18 16 3 N -0.69 -14.38 5.84 -109.19 -0.64 -15.01 16 4 C 0.23 5.49 2.23 -70.02 -0.16 5.33 16 5 H 0.07 1.88 6.88 -51.93 -0.36 1.52 16 6 C -0.54 -13.92 8.07 -34.44 -0.28 -14.20 16 7 H 0.06 1.50 7.75 -52.49 -0.41 1.09 16 8 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 9 N -0.88 -23.97 12.87 55.43 0.71 -23.26 16 10 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 14 C 0.01 0.15 4.93 -104.64 -0.52 -0.36 16 15 C -0.12 -2.44 9.26 -39.56 -0.37 -2.80 16 16 C -0.12 -2.17 10.04 -39.61 -0.40 -2.57 16 17 C -0.18 -3.31 9.99 -39.43 -0.39 -3.71 16 18 C 0.09 1.78 6.70 -39.22 -0.26 1.52 16 19 O -0.51 -9.13 13.50 -19.42 -0.26 -9.39 16 20 C -0.13 -2.99 9.61 -39.44 -0.38 -3.37 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 24 H 0.03 0.66 8.00 -51.93 -0.42 0.24 16 25 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 26 H 0.33 6.50 7.87 -39.29 -0.31 6.19 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.11 2.18 7.46 -52.49 -0.39 1.79 16 29 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 30 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.38 5.08 9.06 45.56 0.41 5.49 16 32 H 0.12 2.99 7.99 -52.48 -0.42 2.57 16 LS Contribution 277.65 15.07 4.18 4.18 Total: -1.00 -28.22 277.65 -7.07 -35.29 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -3.55 Total: 11.69 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -2.49 Total: -19.02 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.08 Total: -38.27 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.26 Total: -9.39 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.22 -7.07 -35.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143114.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.604 kcal (2) G-P(sol) polarization free energy of solvation -28.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds