Wall clock time and date at job start Mon Mar 30 2020 03:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00082 * 2 1 4 4 H 1.48498 * 109.47245 * 270.00189 * 3 2 1 5 5 H 1.48500 * 109.46845 * 30.00185 * 3 2 1 6 6 H 1.48502 * 109.47096 * 150.00004 * 3 2 1 7 7 C 1.37883 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99716 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99914 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.53756 * 59.90741 * 9 7 2 11 11 C 1.53115 * 109.50773 * 299.80159 * 9 7 2 12 12 C 1.53112 * 109.16626 * 182.40626 * 11 9 7 13 13 C 1.53045 * 109.27754 * 57.65287 * 12 11 9 14 14 N 1.46842 * 109.52273 * 300.82665 * 13 12 11 15 15 C 1.38504 * 110.99562 * 185.83895 * 14 13 12 16 16 N 1.31201 * 125.78738 * 235.82335 * 15 14 13 17 17 C 1.34390 * 109.30151 * 179.97438 * 16 15 14 18 18 C 1.34370 * 108.31930 * 359.72973 * 17 16 15 19 19 N 1.36025 * 125.79200 * 55.79179 * 15 14 13 20 20 H 0.97001 * 126.49173 * 0.02562 * 19 15 14 21 21 C 1.46842 * 111.20311 * 61.73651 * 14 13 12 22 22 H 0.97001 * 120.00111 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.52385 * 302.31550 * 11 9 7 24 24 H 1.09005 * 109.52195 * 62.49729 * 11 9 7 25 25 H 1.09003 * 109.50557 * 177.59556 * 12 11 9 26 26 H 1.09000 * 109.50386 * 297.67996 * 12 11 9 27 27 H 1.08996 * 109.46160 * 180.80420 * 13 12 11 28 28 H 1.09002 * 109.45621 * 60.83574 * 13 12 11 29 29 H 1.08005 * 125.83574 * 180.02562 * 17 16 15 30 30 H 1.07996 * 126.52877 * 180.26059 * 18 17 16 31 31 H 1.09007 * 109.45749 * 58.27463 * 21 14 13 32 32 H 1.09000 * 109.46586 * 178.24659 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6525 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6223 -2.5571 -0.8891 11 6 0.3746 -2.5836 1.2522 12 6 -0.3410 -3.9370 1.2748 13 6 0.6990 -5.0591 1.2371 14 7 1.5112 -4.9348 0.0201 15 6 2.3757 -6.0089 -0.1114 16 7 3.6794 -5.9333 -0.2389 17 6 4.1883 -7.1729 -0.3411 18 6 3.1751 -8.0526 -0.2699 19 7 2.0174 -7.3209 -0.1297 20 1 1.1172 -7.6742 -0.0541 21 6 2.2448 -3.6630 -0.0012 22 1 -0.4850 0.8400 -0.0004 23 1 0.9987 -2.4866 2.1406 24 1 -0.3634 -1.7815 1.2352 25 1 -0.9334 -4.0203 2.1860 26 1 -0.9953 -4.0172 0.4067 27 1 0.1922 -6.0241 1.2387 28 1 1.3437 -4.9862 2.1130 29 1 5.2335 -7.4198 -0.4556 30 1 3.2537 -9.1287 -0.3167 31 1 2.8823 -3.5967 0.8805 32 1 2.8607 -3.6139 -0.8992 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143642.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:48 Heat of formation + Delta-G solvation = 42.300468 kcal Electronic energy + Delta-G solvation = -15143.366514 eV Core-core repulsion = 12717.858779 eV Total energy + Delta-G solvation = -2425.507734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.86675 -39.67424 -35.59877 -33.58676 -33.37431 -31.70052 -29.16730 -27.00433 -25.20153 -23.52134 -22.10310 -21.58309 -20.33639 -19.53013 -18.22010 -16.72617 -16.41128 -16.17201 -15.74089 -15.21325 -14.78543 -14.52019 -14.38653 -14.28035 -13.97336 -13.42908 -12.86931 -12.69181 -12.56208 -11.93681 -11.81109 -11.50896 -11.08677 -10.99087 -10.94605 -10.80300 -10.48117 -10.34384 -8.69126 -8.09639 -6.22803 1.14214 1.42320 1.42838 1.53476 1.90498 2.21272 2.44839 3.10176 3.17959 3.83790 4.11661 4.17809 4.28899 4.48258 4.49784 4.60630 4.71824 4.78960 4.87624 4.97867 5.07593 5.12613 5.29839 5.40942 5.57824 5.62888 5.78749 5.98454 6.10832 6.13112 6.38420 6.77402 6.86332 7.24943 7.44671 8.95627 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044811 B = 0.007482 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.698510 B = 3741.241561 C = 4246.642814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.052 3.948 10 H 0.003 0.997 11 C -0.108 4.108 12 C -0.109 4.109 13 C 0.068 3.932 14 N -0.466 5.466 15 C 0.373 3.627 16 N -0.563 5.563 17 C -0.052 4.052 18 C -0.039 4.039 19 N -0.566 5.566 20 H 0.432 0.568 21 C 0.113 3.887 22 H 0.262 0.738 23 H 0.026 0.974 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.034 0.966 29 H 0.186 0.814 30 H 0.225 0.775 31 H 0.022 0.978 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 -15.472 2.451 15.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.065 0.935 9 C 0.033 3.967 10 H 0.021 0.979 11 C -0.146 4.146 12 C -0.146 4.146 13 C -0.059 4.059 14 N -0.189 5.189 15 C 0.019 3.981 16 N -0.290 5.290 17 C -0.198 4.198 18 C -0.171 4.171 19 N -0.176 5.176 20 H 0.273 0.727 21 C -0.014 4.014 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.052 0.948 29 H 0.203 0.797 30 H 0.241 0.759 31 H 0.040 0.960 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.819 -14.628 2.043 14.792 hybrid contribution 0.123 0.370 0.390 0.551 sum 0.941 -14.258 2.433 14.495 Atomic orbital electron populations 1.70003 1.06974 1.27243 1.50948 1.25656 0.95721 1.02119 0.94556 0.85616 0.78721 0.79422 0.78267 1.20170 1.20406 1.19608 1.21428 0.92911 0.92064 1.51293 0.93461 1.18661 0.92811 0.90763 0.94436 0.97926 1.21512 0.99242 0.96689 0.97138 1.21614 0.96979 0.93774 1.02261 1.22248 0.94860 1.00709 0.88033 1.58808 1.21726 1.00267 1.38072 1.21375 0.88684 0.83897 1.04150 1.70674 1.05886 1.27341 1.25073 1.22692 1.01194 0.87543 1.08413 1.23268 0.83721 0.99733 1.10398 1.43246 1.11205 1.04832 1.58271 0.72750 1.21743 0.94758 0.85662 0.99272 0.92852 0.95561 0.91500 0.89572 0.92028 0.88238 0.94765 0.79686 0.75869 0.96005 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.90 11.36 21.45 0.24 -52.66 16 2 C 0.02 1.05 5.30 84.66 0.45 1.50 16 3 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -30.98 8.56 25.60 0.22 -30.76 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 9 C 0.05 2.75 2.26 -11.49 -0.03 2.72 16 10 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 11 C -0.11 -5.10 5.03 30.67 0.15 -4.94 16 12 C -0.11 -3.90 6.09 30.65 0.19 -3.71 16 13 C 0.07 2.21 5.38 86.33 0.46 2.68 16 14 N -0.47 -18.09 4.72 -706.67 -3.33 -21.42 16 15 C 0.37 13.19 7.35 260.37 1.91 15.10 16 16 N -0.56 -21.57 10.23 -197.94 -2.02 -23.60 16 17 C -0.05 -1.46 11.84 83.42 0.99 -0.47 16 18 C -0.04 -0.80 12.04 82.89 1.00 0.20 16 19 N -0.57 -13.75 6.00 -195.53 -1.17 -14.92 16 20 H 0.43 7.45 8.64 -92.71 -0.80 6.65 16 21 C 0.11 5.31 4.08 86.33 0.35 5.66 16 22 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 23 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.07 3.54 6.17 -2.38 -0.01 3.53 16 25 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.10 2.41 7.60 -2.39 -0.02 2.39 16 28 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.19 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.05 2.61 7.90 -2.39 -0.02 2.59 16 Total: -1.00 -69.24 262.44 1.75 -67.49 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.31 Total: 10.51 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 5.70 Total: -12.03 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -6.29 Total: -112.60 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -69.24 1.75 -67.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143642.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.794 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds