Wall clock time and date at job start Mon Mar 30 2020 03:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86801 * 119.99771 * 2 1 4 4 H 1.48501 * 109.46668 * 274.97892 * 3 2 1 5 5 H 1.48505 * 109.47213 * 34.97678 * 3 2 1 6 6 H 1.48503 * 109.46924 * 154.97863 * 3 2 1 7 7 C 1.40236 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99948 * 186.03624 * 7 2 1 9 9 C 1.39999 * 120.00055 * 6.04301 * 7 2 1 10 10 N 1.32980 * 125.96518 * 354.27171 * 9 7 2 11 11 C 1.32752 * 109.22874 * 180.23631 * 10 9 7 12 12 C 1.36224 * 108.61811 * 359.75620 * 11 10 9 13 13 N 1.36415 * 107.19064 * 0.02562 * 12 11 10 14 14 C 1.46506 * 126.55426 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.50136 * 179.97438 * 14 13 12 16 16 C 1.53116 * 109.53381 * 59.84770 * 14 13 12 17 17 C 1.53123 * 109.16180 * 182.38427 * 16 14 13 18 18 C 1.53038 * 109.27676 * 57.65365 * 17 16 14 19 19 N 1.46848 * 109.52201 * 300.82426 * 18 17 16 20 20 C 1.46842 * 111.20233 * 61.74293 * 19 18 17 21 21 H 0.96998 * 120.00384 * 0.02562 * 1 2 3 22 22 H 1.08002 * 125.69436 * 179.74662 * 11 10 9 23 23 H 1.07991 * 126.40276 * 179.97438 * 12 11 10 24 24 H 1.08998 * 109.52629 * 302.29547 * 16 14 13 25 25 H 1.09003 * 109.52089 * 62.41497 * 16 14 13 26 26 H 1.08994 * 109.50562 * 177.59970 * 17 16 14 27 27 H 1.09005 * 109.49888 * 297.67540 * 17 16 14 28 28 H 1.08994 * 109.45810 * 180.80595 * 18 17 16 29 29 H 1.08999 * 109.46056 * 60.83744 * 18 17 16 30 30 H 1.00897 * 110.99739 * 297.63957 * 19 18 17 31 31 H 1.09001 * 109.46090 * 58.27161 * 20 19 18 32 32 H 1.09002 * 109.46501 * 178.25366 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4948 2.6201 0.8026 6 1 3.5871 1.4121 0.5922 7 6 2.0081 -1.2145 0.0005 8 1 3.0836 -1.2170 0.0989 9 6 1.3139 -2.4236 -0.1266 10 7 -0.0080 -2.5668 -0.1472 11 6 -0.3063 -3.8540 -0.2753 12 6 0.8538 -4.5645 -0.3450 13 7 1.8802 -3.6705 -0.2547 14 6 3.3119 -3.9798 -0.2835 15 1 3.8854 -3.0575 -0.1916 16 6 3.6602 -4.6694 -1.6055 17 6 5.1454 -5.0422 -1.6019 18 6 5.4368 -5.9447 -0.4008 19 7 5.0876 -5.2396 0.8390 20 6 3.6565 -4.9131 0.8793 21 1 -0.4850 0.8400 -0.0004 22 1 -1.3026 -4.2688 -0.3172 23 1 0.9441 -5.6354 -0.4509 24 1 3.0584 -5.5715 -1.7155 25 1 3.4558 -3.9919 -2.4346 26 1 5.3900 -5.5715 -2.5228 27 1 5.7477 -4.1364 -1.5319 28 1 6.4963 -6.2003 -0.3873 29 1 4.8444 -6.8563 -0.4794 30 1 5.6510 -4.4106 0.9544 31 1 3.0725 -5.8296 0.7948 32 1 3.4230 -4.4193 1.8226 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261148586.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:36 Heat of formation + Delta-G solvation = 51.139196 kcal Electronic energy + Delta-G solvation = -15269.909620 eV Core-core repulsion = 12844.785162 eV Total energy + Delta-G solvation = -2425.124458 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.13987 -38.13556 -33.32545 -32.67653 -31.33698 -28.65876 -28.24894 -24.87474 -23.49911 -22.65108 -20.76889 -19.74249 -18.66461 -16.90935 -15.86137 -15.48974 -14.75226 -14.54366 -14.47784 -13.79639 -12.91971 -12.85604 -12.43298 -12.35341 -12.04545 -11.90955 -11.24424 -11.19521 -11.15294 -11.07197 -10.73975 -10.40324 -10.36839 -10.01876 -9.18600 -8.57646 -7.79128 -7.68770 -7.01018 -6.37287 -4.24196 3.05258 3.16112 3.18650 3.68715 3.99456 4.17347 4.53205 4.76151 4.89981 5.04378 5.16812 5.26371 5.49057 5.61301 5.61790 5.74432 5.91131 5.96410 6.04437 6.16706 6.35193 6.41390 6.44921 6.61703 7.02692 7.17273 7.33180 7.41244 7.66037 8.13588 8.26419 8.62126 9.00256 9.36811 10.29493 10.56653 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029423 B = 0.009587 C = 0.007907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.398764 B = 2919.810384 C = 3540.127599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.083 3.917 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.466 4.466 8 H 0.074 0.926 9 C 0.375 3.625 10 N -0.518 5.518 11 C -0.018 4.018 12 C -0.173 4.173 13 N -0.498 5.498 14 C 0.122 3.878 15 H 0.089 0.911 16 C -0.125 4.125 17 C -0.154 4.154 18 C 0.055 3.945 19 N -0.682 5.682 20 C 0.052 3.948 21 H 0.271 0.729 22 H 0.132 0.868 23 H 0.131 0.869 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.341 0.659 31 H 0.074 0.926 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 -6.456 -1.454 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.505 4.505 8 H 0.092 0.908 9 C 0.132 3.868 10 N -0.239 5.239 11 C -0.170 4.170 12 C -0.303 4.303 13 N -0.188 5.188 14 C 0.015 3.985 15 H 0.107 0.893 16 C -0.164 4.164 17 C -0.194 4.194 18 C -0.075 4.075 19 N -0.311 5.311 20 C -0.078 4.078 21 H 0.082 0.918 22 H 0.150 0.850 23 H 0.149 0.851 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.158 0.842 31 H 0.092 0.908 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.744 -6.379 -1.007 10.870 hybrid contribution 0.842 0.686 -0.876 1.395 sum 9.586 -5.693 -1.882 11.307 Atomic orbital electron populations 1.70020 1.06871 1.27480 1.32433 1.25669 0.94710 1.00074 0.93588 0.86338 0.80223 0.81469 0.78761 1.19789 1.20243 1.18918 1.18043 0.93618 0.87925 1.50919 0.90765 1.20293 0.87464 0.83681 0.95326 1.71283 1.10354 1.14499 1.27740 1.22118 0.95867 0.92306 1.06740 1.21699 0.88738 0.94179 1.25671 1.45395 1.03419 1.07849 1.62173 1.21627 0.82652 0.98928 0.95303 0.89257 1.21912 0.95445 1.00952 0.98079 1.22283 0.96687 1.00494 0.99931 1.22048 1.00915 0.97089 0.87425 1.60745 1.05083 1.29445 1.35786 1.22385 0.88209 0.98972 0.98229 0.91803 0.85047 0.85142 0.91704 0.91475 0.91419 0.91814 0.90840 0.91035 0.84208 0.90765 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.14 11.92 55.56 0.66 -20.47 16 2 C 0.08 2.22 5.49 -17.29 -0.09 2.12 16 3 Si 0.91 19.38 29.57 -169.99 -5.03 14.35 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.47 -12.77 9.01 -38.17 -0.34 -13.11 16 8 H 0.07 1.88 6.74 -52.49 -0.35 1.53 16 9 C 0.38 10.54 7.43 -155.60 -1.16 9.39 16 10 N -0.52 -15.32 9.43 -12.72 -0.12 -15.44 16 11 C -0.02 -0.46 11.85 -17.88 -0.21 -0.67 16 12 C -0.17 -4.01 10.58 -16.24 -0.17 -4.19 16 13 N -0.50 -11.75 2.67 -108.79 -0.29 -12.04 16 14 C 0.12 2.28 2.96 -67.85 -0.20 2.07 16 15 H 0.09 1.73 6.70 -51.93 -0.35 1.38 16 16 C -0.13 -2.01 5.37 -26.61 -0.14 -2.15 16 17 C -0.15 -1.88 6.08 -26.65 -0.16 -2.04 16 18 C 0.06 0.64 6.55 -3.83 -0.03 0.61 16 19 N -0.68 -9.15 6.87 -113.82 -0.78 -9.93 16 20 C 0.05 0.86 5.90 -3.84 -0.02 0.83 16 21 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 22 H 0.13 3.00 8.06 -52.49 -0.42 2.57 16 23 H 0.13 2.61 8.06 -52.49 -0.42 2.19 16 24 H 0.06 1.05 7.90 -51.93 -0.41 0.64 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.34 4.21 8.86 -39.29 -0.35 3.86 16 31 H 0.07 1.24 7.94 -51.93 -0.41 0.83 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 264.40 15.07 3.98 3.98 Total: -1.00 -31.25 264.40 -8.49 -39.74 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.39 Total: 6.94 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.53 Total: -7.13 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.53 Total: -57.89 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.25 -8.49 -39.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148586.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.879 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds