Wall clock time and date at job start Mon Mar 30 2020 02:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46505 * 119.99970 * 2 1 4 4 C 1.52991 * 109.47310 * 270.00565 * 3 2 1 5 5 O 1.42899 * 109.47369 * 64.99863 * 4 3 2 6 6 C 1.39681 * 120.00183 * 180.02562 * 2 1 3 7 7 C 1.39335 * 119.95229 * 179.72435 * 6 2 1 8 8 C 1.38480 * 120.42074 * 179.72335 * 7 6 2 9 9 C 1.37691 * 120.32512 * 0.54925 * 8 7 6 10 10 C 1.40745 * 119.89354 * 359.73149 * 9 8 7 11 11 C 1.41411 * 120.20869 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00195 * 154.96925 * 11 10 9 13 13 C 1.39937 * 119.99575 * 334.96177 * 11 10 9 14 14 N 1.30833 * 119.99837 * 342.54688 * 13 11 10 15 15 Si 1.86801 * 119.99914 * 162.54301 * 13 11 10 16 16 H 1.48498 * 109.47003 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46623 * 120.00027 * 15 13 11 18 18 H 1.48495 * 109.47084 * 240.00339 * 15 13 11 19 19 C 1.38276 * 119.95040 * 359.97438 * 6 2 1 20 20 H 1.08990 * 109.47342 * 89.99706 * 1 2 3 21 21 H 1.09002 * 109.46798 * 210.00144 * 1 2 3 22 22 H 1.09000 * 109.46929 * 329.99386 * 1 2 3 23 23 H 1.08995 * 109.46925 * 149.99852 * 3 2 1 24 24 H 1.09006 * 109.46529 * 30.00420 * 3 2 1 25 25 H 1.08998 * 109.47692 * 184.99868 * 4 3 2 26 26 H 1.09004 * 109.47206 * 305.00225 * 4 3 2 27 27 H 0.96698 * 114.00311 * 180.02562 * 5 4 3 28 28 H 1.07998 * 119.78688 * 0.02562 * 7 6 2 29 29 H 1.08001 * 119.83729 * 180.27954 * 8 7 6 30 30 H 1.07996 * 120.04600 * 179.74712 * 9 8 7 31 31 H 0.96999 * 119.99796 * 179.97438 * 14 13 11 32 32 H 1.08004 * 120.16343 * 359.97438 * 19 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 8 1.2060 1.9937 -2.0812 6 6 2.1635 -1.2097 -0.0005 7 6 3.5568 -1.2085 -0.0063 8 6 4.2591 -2.4020 -0.0012 9 6 3.5873 -3.6039 -0.0016 10 6 2.1799 -3.6208 -0.0016 11 6 1.4832 -4.8514 -0.0015 12 1 0.4797 -4.9038 0.3942 13 6 2.0941 -6.0012 -0.5143 14 7 3.1417 -5.8945 -1.2907 15 14 1.4137 -7.6885 -0.0903 16 1 0.2329 -7.5372 0.7974 17 1 1.0089 -8.3865 -1.3370 18 1 2.4579 -8.4828 0.6051 19 6 1.4711 -2.4066 -0.0005 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 3.1499 1.1384 0.5138 24 1 1.6084 2.0284 0.5139 25 1 3.0731 2.6065 -1.4438 26 1 2.9641 0.9132 -1.9816 27 1 1.2914 2.2799 -3.0009 28 1 4.0925 -0.2707 -0.0100 29 1 5.3390 -2.3900 -0.0012 30 1 4.1395 -4.5320 -0.0017 31 1 3.5653 -6.6916 -1.6459 32 1 0.3911 -2.4088 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261151706.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:23 Heat of formation + Delta-G solvation = -23.549737 kcal Electronic energy + Delta-G solvation = -14800.138382 eV Core-core repulsion = 12339.482417 eV Total energy + Delta-G solvation = -2460.655964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.31198 -36.67943 -35.03615 -33.14513 -30.26622 -29.31743 -28.11850 -25.42649 -24.43637 -22.18522 -20.33681 -19.54779 -17.58653 -16.93899 -15.56564 -15.40704 -14.83547 -14.39032 -14.07321 -13.45442 -13.16606 -12.76821 -12.44846 -12.38247 -11.88242 -11.50562 -11.23698 -11.08029 -11.05061 -10.93782 -10.43877 -10.29479 -9.89690 -9.66261 -9.22413 -9.12958 -8.46423 -7.34854 -6.67568 -6.08114 -4.27449 2.87107 3.12241 3.18111 3.25476 3.38733 3.96884 4.03692 4.49406 4.75222 5.40106 5.46418 5.51293 5.80376 5.85967 5.92414 6.07814 6.19150 6.37609 6.44298 6.58671 7.06760 7.11314 7.15634 7.32239 7.41905 7.76540 7.82821 7.96394 8.16295 8.29900 8.45242 8.58813 8.83886 9.04138 9.15606 10.28629 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045305 B = 0.006956 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.885897 B = 4024.270067 C = 4305.076689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.637 5.637 3 C 0.134 3.866 4 C 0.054 3.946 5 O -0.568 6.568 6 C 0.224 3.776 7 C -0.305 4.305 8 C -0.075 4.075 9 C -0.200 4.200 10 C 0.141 3.859 11 C -0.464 4.464 12 H 0.076 0.924 13 C 0.077 3.923 14 N -0.793 5.793 15 Si 0.905 3.095 16 H -0.261 1.261 17 H -0.276 1.276 18 H -0.273 1.273 19 C -0.287 4.287 20 H 0.038 0.962 21 H 0.061 0.939 22 H 0.046 0.954 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.371 0.629 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.278 0.722 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 8.851 0.079 8.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.352 5.352 3 C 0.010 3.990 4 C -0.025 4.025 5 O -0.373 6.373 6 C 0.127 3.873 7 C -0.328 4.328 8 C -0.094 4.094 9 C -0.220 4.220 10 C 0.138 3.862 11 C -0.494 4.494 12 H 0.094 0.906 13 C -0.140 4.140 14 N -0.419 5.419 15 Si 0.730 3.270 16 H -0.185 1.185 17 H -0.201 1.201 18 H -0.198 1.198 19 C -0.311 4.311 20 H 0.056 0.944 21 H 0.080 0.920 22 H 0.065 0.935 23 H 0.104 0.896 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.216 0.784 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.056 8.647 0.542 8.728 hybrid contribution 0.075 -0.577 -0.600 0.836 sum -0.981 8.070 -0.058 8.130 Atomic orbital electron populations 1.21332 0.80807 1.00664 1.00245 1.46084 1.04005 1.02444 1.82670 1.21232 0.97871 0.86263 0.93679 1.22857 0.85542 0.98159 0.95984 1.86509 1.31074 1.90206 1.29474 1.17526 0.90821 0.84342 0.94593 1.19873 0.91516 0.96474 1.24912 1.20422 0.96858 0.92949 0.99152 1.21161 0.94577 0.96221 1.10065 1.17373 0.91792 0.91465 0.85598 1.19577 1.01382 0.92420 1.36019 0.90635 1.25890 0.94190 1.01269 0.92658 1.69874 1.18246 1.31308 1.22434 0.86321 0.79981 0.81540 0.79189 1.18468 1.20113 1.19776 1.20533 0.97399 0.90909 1.22241 0.94372 0.91995 0.93479 0.89645 0.91677 0.94100 0.92982 0.78384 0.89668 0.89681 0.86846 0.91149 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.00 9.83 59.85 0.59 2.59 16 2 N -0.64 -12.47 2.97 -179.68 -0.53 -13.00 16 3 C 0.13 2.13 5.60 -4.04 -0.02 2.11 16 4 C 0.05 0.78 7.39 37.15 0.27 1.05 16 5 O -0.57 -8.16 13.22 -35.23 -0.47 -8.63 16 6 C 0.22 5.25 6.54 -83.86 -0.55 4.70 16 7 C -0.30 -7.03 9.22 -39.08 -0.36 -7.39 16 8 C -0.07 -1.82 10.02 -39.69 -0.40 -2.22 16 9 C -0.20 -5.40 8.69 -38.83 -0.34 -5.74 16 10 C 0.14 3.91 5.57 -106.85 -0.59 3.31 16 11 C -0.46 -12.75 9.05 -37.74 -0.34 -13.09 16 12 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 13 C 0.08 2.00 5.14 -17.34 -0.09 1.91 16 14 N -0.79 -21.13 10.97 55.55 0.61 -20.52 16 15 Si 0.91 19.14 29.59 -169.99 -5.03 14.11 16 16 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 17 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 C -0.29 -7.40 8.95 -38.68 -0.35 -7.74 16 20 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.06 1.12 6.19 -51.93 -0.32 0.80 16 22 H 0.05 0.71 7.89 -51.93 -0.41 0.30 16 23 H 0.09 1.32 6.19 -51.93 -0.32 0.99 16 24 H 0.06 0.93 7.89 -51.93 -0.41 0.52 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.37 3.62 9.12 45.56 0.42 4.04 16 28 H 0.09 1.73 6.12 -52.49 -0.32 1.41 16 29 H 0.08 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.11 3.16 6.18 -52.49 -0.32 2.83 16 31 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 32 H 0.09 2.31 6.12 -52.48 -0.32 1.99 16 LS Contribution 268.45 15.07 4.05 4.05 Total: -1.00 -30.34 268.45 -6.81 -37.15 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -3.25 Total: 7.36 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -2.18 Total: -20.51 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.08 Total: -33.52 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.47 Total: -8.63 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.34 -6.81 -37.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261151706.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.600 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds