Wall clock time and date at job start Mon Mar 30 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00187 * 2 1 4 4 H 1.48490 * 109.47224 * 239.99504 * 3 2 1 5 5 H 1.48495 * 109.47013 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46837 * 119.99549 * 3 2 1 7 7 C 1.37886 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00202 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99711 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46695 * 179.97438 * 9 7 2 11 11 C 1.40795 * 120.00039 * 90.00322 * 10 9 7 12 12 C 1.40230 * 126.06737 * 174.33148 * 11 10 9 13 13 N 1.30862 * 108.36364 * 180.02562 * 12 11 10 14 14 N 1.40081 * 108.35608 * 359.75069 * 13 12 11 15 15 H 0.97001 * 126.06311 * 180.27274 * 14 13 12 16 16 C 1.35702 * 126.06587 * 354.35105 * 11 10 9 17 17 C 1.46504 * 119.99784 * 269.99465 * 10 9 7 18 18 C 1.53786 * 113.61390 * 41.11846 * 17 10 9 19 19 C 1.53778 * 87.07864 * 220.01692 * 18 17 10 20 20 C 1.53772 * 113.61890 * 303.61897 * 17 10 9 21 21 H 0.96995 * 120.00171 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47150 * 59.99645 * 9 7 2 23 23 H 1.08995 * 109.46945 * 299.99848 * 9 7 2 24 24 H 1.07999 * 125.81359 * 359.97438 * 12 11 10 25 25 H 1.07999 * 126.22901 * 359.97438 * 16 11 10 26 26 H 1.09005 * 112.84968 * 172.41713 * 17 10 9 27 27 H 1.08999 * 113.60922 * 334.56491 * 18 17 10 28 28 H 1.09001 * 113.61303 * 105.46463 * 18 17 10 29 29 H 1.09007 * 113.61412 * 270.88040 * 19 18 17 30 30 H 1.08997 * 113.61508 * 139.98127 * 19 18 17 31 31 H 1.09001 * 113.61654 * 254.52806 * 20 17 10 32 32 H 1.09003 * 113.61308 * 25.34849 * 20 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2123 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6604 -4.1478 1.2199 12 6 3.4784 -5.2768 1.3708 13 7 3.6900 -5.4648 2.6485 14 7 3.0202 -4.4603 3.3590 15 1 3.0082 -4.3539 4.3231 16 6 2.3877 -3.6628 2.4575 17 6 2.6789 -4.1695 -1.2683 18 6 2.9859 -3.1028 -2.3326 19 6 2.3536 -4.0577 -3.3588 20 6 1.5482 -4.6527 -2.1917 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 3.8667 -5.8876 0.5693 25 1 1.7821 -2.7980 2.6850 26 1 3.4776 -4.8997 -1.1370 27 1 2.4275 -2.1766 -2.1961 28 1 4.0516 -2.9365 -2.4895 29 1 3.0640 -4.7567 -3.8003 30 1 1.7369 -3.5532 -4.1025 31 1 1.4534 -5.7377 -2.2350 32 1 0.5965 -4.1512 -2.0158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261161341.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:50 Heat of formation + Delta-G solvation = 101.883352 kcal Electronic energy + Delta-G solvation = -15179.159691 eV Core-core repulsion = 12756.235665 eV Total energy + Delta-G solvation = -2422.924026 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.33178 -38.33837 -34.14296 -32.40192 -30.59791 -28.30571 -26.86734 -24.92904 -23.87288 -22.43340 -20.98140 -19.29965 -18.27313 -17.53926 -16.34603 -15.14100 -14.86570 -14.34365 -13.99193 -13.84664 -13.48356 -12.66933 -12.48245 -11.96066 -11.75630 -11.59756 -11.11902 -10.94563 -10.60460 -10.45338 -10.25047 -10.23443 -9.91613 -9.61195 -9.43546 -8.99675 -8.73130 -8.43867 -6.25212 -5.81491 -4.08704 2.54181 3.29839 3.34758 3.37689 3.48898 3.69293 4.35378 4.51860 5.25919 5.26514 5.32764 5.43382 5.54905 5.68187 5.72480 6.03655 6.16348 6.30876 6.38485 6.47530 6.52390 6.68103 6.78738 6.92771 7.21238 7.30383 7.44472 7.88196 7.96040 8.18459 8.30285 8.56873 8.76042 9.04599 9.57640 11.01819 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020346 B = 0.011619 C = 0.008322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.832985 B = 2409.285201 C = 3363.914822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.264 3.736 10 N -0.603 5.603 11 C 0.086 3.914 12 C -0.002 4.002 13 N -0.296 5.296 14 N -0.485 5.485 15 H 0.434 0.566 16 C -0.029 4.029 17 C 0.151 3.849 18 C -0.151 4.151 19 C -0.145 4.145 20 C -0.156 4.156 21 H 0.262 0.738 22 H 0.029 0.971 23 H 0.023 0.977 24 H 0.171 0.829 25 H 0.175 0.825 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 -7.171 -0.690 8.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.562 4.562 8 H 0.077 0.923 9 C 0.144 3.856 10 N -0.317 5.317 11 C -0.021 4.021 12 C -0.190 4.190 13 N -0.121 5.121 14 N -0.199 5.199 15 H 0.276 0.724 16 C -0.178 4.178 17 C 0.045 3.955 18 C -0.190 4.190 19 C -0.183 4.183 20 C -0.195 4.195 21 H 0.072 0.928 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.188 0.812 25 H 0.192 0.808 26 H 0.103 0.897 27 H 0.131 0.869 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.996 -7.694 0.013 8.670 hybrid contribution 0.027 1.691 -0.198 1.703 sum 4.023 -6.003 -0.185 7.229 Atomic orbital electron populations 1.69920 1.05916 1.26949 1.50843 1.24962 0.94767 0.98991 0.95463 0.86681 0.79584 0.83222 0.78675 1.20276 1.21407 1.20371 1.21665 0.93620 0.90830 1.50052 0.92314 1.18978 0.86994 0.82345 0.97257 1.46324 1.49315 1.37130 0.98959 1.17846 1.01109 0.95490 0.87705 1.23417 1.02624 0.98837 0.94167 1.76959 1.18932 1.11240 1.04968 1.45800 1.42378 1.23500 1.08251 0.72390 1.21910 1.06476 1.00684 0.88684 1.22034 0.95156 0.95187 0.83138 1.23572 1.00560 1.00133 0.94742 1.22688 0.99593 0.99376 0.96634 1.23477 0.99884 0.99562 0.96588 0.92801 0.95316 0.95871 0.81208 0.80822 0.89683 0.86914 0.92744 0.91215 0.91811 0.92557 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.20 13.29 55.43 0.74 -24.46 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -13.69 7.72 -34.44 -0.27 -13.96 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.26 6.40 4.31 -5.19 -0.02 6.38 16 10 N -0.60 -12.56 2.84 -164.81 -0.47 -13.03 16 11 C 0.09 1.73 6.68 -83.90 -0.56 1.17 16 12 C 0.00 -0.03 11.21 -17.22 -0.19 -0.23 16 13 N -0.30 -5.31 12.69 30.70 0.39 -4.92 16 14 N -0.48 -8.02 7.41 30.71 0.23 -7.79 16 15 H 0.43 5.52 8.96 -182.61 -1.64 3.89 16 16 C -0.03 -0.56 11.12 -16.63 -0.18 -0.74 16 17 C 0.15 2.70 4.27 -67.12 -0.29 2.41 16 18 C -0.15 -2.72 7.34 -25.92 -0.19 -2.91 16 19 C -0.14 -2.17 8.08 -25.92 -0.21 -2.38 16 20 C -0.16 -2.54 7.61 -25.93 -0.20 -2.74 16 21 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 22 H 0.03 0.74 6.31 -51.93 -0.33 0.41 16 23 H 0.02 0.60 7.08 -51.93 -0.37 0.24 16 24 H 0.17 2.56 7.06 -52.49 -0.37 2.19 16 25 H 0.17 3.38 7.41 -52.49 -0.39 2.99 16 26 H 0.09 1.35 6.55 -51.93 -0.34 1.01 16 27 H 0.11 2.43 5.81 -51.93 -0.30 2.13 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.58 6.68 -51.93 -0.35 1.23 16 LS Contribution 265.42 15.07 4.00 4.00 Total: -1.00 -28.80 265.42 -7.66 -36.46 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.32 Total: 5.26 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.21 Total: -11.49 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.88 Total: -50.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.80 -7.66 -36.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161341.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.340 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds