Wall clock time and date at job start Mon Mar 30 2020 03:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86796 * 120.00238 * 2 1 4 4 H 1.48497 * 109.47172 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47241 * 120.00041 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99958 * 3 2 1 7 7 C 1.40072 * 119.99757 * 180.27318 * 2 1 3 8 8 H 1.08001 * 120.00244 * 179.97438 * 7 2 1 9 9 C 1.40061 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.39626 * 127.06141 * 359.67884 * 9 7 2 11 11 N 1.33014 * 107.46337 * 179.87543 * 10 9 7 12 12 C 1.31012 * 109.98031 * 0.40311 * 11 10 9 13 13 N 1.35076 * 109.64919 * 359.74529 * 12 11 10 14 14 C 1.46492 * 126.48784 * 180.02562 * 13 12 11 15 15 H 1.09006 * 109.50723 * 180.02562 * 14 13 12 16 16 C 1.53114 * 109.50460 * 59.97497 * 14 13 12 17 17 C 1.53120 * 109.16616 * 182.40596 * 16 14 13 18 18 C 1.53040 * 109.27609 * 57.65212 * 17 16 14 19 19 N 1.46849 * 109.52408 * 300.82428 * 18 17 16 20 20 C 1.46842 * 111.19769 * 61.74516 * 19 18 17 21 21 H 0.97005 * 119.99699 * 359.72432 * 1 2 3 22 22 H 1.08006 * 126.26275 * 0.02768 * 10 9 7 23 23 H 1.08005 * 125.17643 * 179.72027 * 12 11 10 24 24 H 1.09004 * 109.52435 * 302.30915 * 16 14 13 25 25 H 1.09001 * 109.52569 * 62.43876 * 16 14 13 26 26 H 1.08994 * 109.50942 * 177.60050 * 17 16 14 27 27 H 1.09009 * 109.50009 * 297.72071 * 17 16 14 28 28 H 1.08999 * 109.46338 * 60.84307 * 18 17 16 29 29 H 1.09002 * 109.46154 * 180.81096 * 18 17 16 30 30 H 1.00902 * 111.00050 * 297.64625 * 19 18 17 31 31 H 1.08995 * 109.46243 * 178.24417 * 20 19 18 32 32 H 1.08999 * 109.46319 * 58.26809 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 1.2777 2.7464 0.0006 5 1 3.0963 1.6963 1.2125 6 1 3.0964 1.6963 -1.2125 7 6 2.0089 -1.2131 -0.0058 8 1 3.0889 -1.2132 -0.0062 9 6 1.3085 -2.4260 -0.0121 10 6 -0.0771 -2.5976 -0.0073 11 7 -0.3174 -3.9059 -0.0191 12 6 0.8128 -4.5685 -0.0224 13 7 1.8481 -3.7009 -0.0183 14 6 3.2722 -4.0440 -0.0206 15 1 3.8668 -3.1304 -0.0156 16 6 3.5996 -4.8594 -1.2745 17 6 5.0757 -5.2648 -1.2393 18 6 5.3508 -6.0604 0.0388 19 7 5.0226 -5.2371 1.2096 20 6 3.5996 -4.8751 1.2222 21 1 -0.4850 0.8401 0.0040 22 1 -0.8182 -1.8119 0.0018 23 1 0.9030 -5.6448 -0.0273 24 1 2.9768 -5.7536 -1.3005 25 1 3.4078 -4.2560 -2.1618 26 1 5.3046 -5.8816 -2.1083 27 1 5.6991 -4.3707 -1.2525 28 1 4.7373 -6.9614 0.0449 29 1 6.4042 -6.3383 0.0740 30 1 5.6054 -4.4142 1.2478 31 1 3.3811 -4.2921 2.1168 32 1 2.9943 -5.7816 1.2227 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261161408.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:27 Heat of formation + Delta-G solvation = 42.839864 kcal Electronic energy + Delta-G solvation = -15264.432749 eV Core-core repulsion = 12838.948405 eV Total energy + Delta-G solvation = -2425.484344 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18624 -38.16082 -33.60019 -32.80249 -31.38235 -29.09297 -27.80544 -24.67094 -23.53964 -22.75301 -20.80577 -19.73547 -18.63845 -17.14612 -15.92015 -15.44808 -14.78085 -14.58957 -14.52471 -13.83537 -13.11502 -12.82804 -12.41049 -12.39657 -12.10226 -11.80008 -11.46998 -11.25159 -11.15867 -10.97428 -10.85797 -10.47516 -10.37520 -10.07433 -9.39606 -8.62729 -8.16608 -7.89724 -6.88828 -6.60552 -4.22538 2.97137 3.07634 3.09482 3.70778 3.88992 4.10254 4.48518 4.77647 4.87641 5.00699 5.13491 5.24278 5.43751 5.50245 5.57402 5.60408 5.88320 5.92567 6.00259 6.12881 6.20693 6.35820 6.40382 6.91622 7.05053 7.13029 7.38025 7.65846 7.86018 8.01495 8.52052 8.90663 9.06947 9.15452 10.02677 10.35033 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.009464 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.219755 B = 2957.873688 C = 3570.990564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.072 3.928 3 Si 0.923 3.077 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.445 4.445 8 H 0.066 0.934 9 C 0.176 3.824 10 C -0.136 4.136 11 N -0.487 5.487 12 C 0.051 3.949 13 N -0.488 5.488 14 C 0.121 3.879 15 H 0.087 0.913 16 C -0.127 4.127 17 C -0.154 4.154 18 C 0.054 3.946 19 N -0.682 5.682 20 C 0.052 3.948 21 H 0.278 0.722 22 H 0.183 0.817 23 H 0.161 0.839 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.340 0.660 31 H 0.080 0.920 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.327 -5.167 -0.762 11.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.144 4.144 3 Si 0.748 3.252 4 H -0.202 1.202 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.481 4.481 8 H 0.085 0.915 9 C 0.065 3.935 10 C -0.284 4.284 11 N -0.205 5.205 12 C -0.222 4.222 13 N -0.182 5.182 14 C 0.014 3.986 15 H 0.106 0.894 16 C -0.165 4.165 17 C -0.194 4.194 18 C -0.075 4.075 19 N -0.310 5.310 20 C -0.078 4.078 21 H 0.090 0.910 22 H 0.200 0.800 23 H 0.178 0.822 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.158 0.842 31 H 0.099 0.901 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.331 -6.012 -0.327 11.105 hybrid contribution 1.220 1.763 -0.849 2.306 sum 10.551 -4.249 -1.176 11.435 Atomic orbital electron populations 1.69615 1.07233 1.28532 1.37571 1.25625 0.94853 1.00636 0.93294 0.86140 0.79593 0.80055 0.79459 1.20219 1.19252 1.19331 1.18266 0.93459 0.88633 1.47708 0.91535 1.19052 0.93195 0.82586 0.98638 1.23371 0.93998 0.90963 1.20110 1.69513 1.26690 1.07401 1.16933 1.23485 0.82827 0.95259 1.20643 1.45038 1.04073 1.07174 1.61895 1.21656 0.82728 0.98622 0.95625 0.89445 1.21927 0.95755 1.00390 0.98443 1.22280 0.96637 1.00759 0.99677 1.22063 1.01143 0.96654 0.87677 1.60749 1.04844 1.24442 1.40928 1.22380 0.88581 0.99517 0.97326 0.91033 0.80004 0.82208 0.91480 0.91424 0.91306 0.91865 0.90895 0.90794 0.84215 0.90125 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.30 10.35 55.56 0.57 -20.73 16 2 C 0.07 1.84 5.50 -17.28 -0.10 1.75 16 3 Si 0.92 18.97 29.56 -169.99 -5.03 13.95 16 4 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.45 -11.84 9.06 -38.21 -0.35 -12.19 16 8 H 0.07 1.66 6.84 -52.49 -0.36 1.30 16 9 C 0.18 4.84 6.74 -83.68 -0.56 4.28 16 10 C -0.14 -3.95 10.88 -16.52 -0.18 -4.13 16 11 N -0.49 -13.47 11.18 -13.59 -0.15 -13.62 16 12 C 0.05 1.22 11.46 -89.92 -1.03 0.19 16 13 N -0.49 -11.42 2.66 -108.45 -0.29 -11.71 16 14 C 0.12 2.20 2.98 -67.85 -0.20 2.00 16 15 H 0.09 1.66 6.83 -51.93 -0.35 1.31 16 16 C -0.13 -1.97 5.36 -26.61 -0.14 -2.11 16 17 C -0.15 -1.82 6.08 -26.65 -0.16 -1.98 16 18 C 0.05 0.61 6.55 -3.83 -0.03 0.59 16 19 N -0.68 -8.88 6.87 -113.81 -0.78 -9.66 16 20 C 0.05 0.83 5.90 -3.83 -0.02 0.81 16 21 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 22 H 0.18 5.50 5.78 -52.48 -0.30 5.19 16 23 H 0.16 3.28 8.06 -52.48 -0.42 2.85 16 24 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.34 4.09 8.86 -39.29 -0.35 3.74 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.08 1.23 7.92 -51.93 -0.41 0.82 16 LS Contribution 261.78 15.07 3.94 3.94 Total: -1.00 -29.82 261.78 -8.78 -38.60 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -4.28 Total: 10.04 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.77 Total: -10.81 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.65 Total: -55.72 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.82 -8.78 -38.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161408.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.439 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds