Wall clock time and date at job start Mon Mar 30 2020 03:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86796 * 120.00238 * 2 1 4 4 H 1.48497 * 109.47172 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47241 * 120.00041 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99958 * 3 2 1 7 7 C 1.40072 * 119.99757 * 180.27318 * 2 1 3 8 8 H 1.08001 * 120.00244 * 179.97438 * 7 2 1 9 9 C 1.40061 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.39626 * 127.06141 * 359.67884 * 9 7 2 11 11 N 1.33014 * 107.46337 * 179.87543 * 10 9 7 12 12 C 1.31012 * 109.98031 * 0.40311 * 11 10 9 13 13 N 1.35076 * 109.64919 * 359.74529 * 12 11 10 14 14 C 1.46492 * 126.48784 * 180.02562 * 13 12 11 15 15 H 1.09006 * 109.50723 * 180.02562 * 14 13 12 16 16 C 1.53114 * 109.50460 * 59.97497 * 14 13 12 17 17 C 1.53120 * 109.16616 * 182.40596 * 16 14 13 18 18 C 1.53040 * 109.27609 * 57.65212 * 17 16 14 19 19 N 1.46849 * 109.52408 * 300.82428 * 18 17 16 20 20 C 1.46842 * 111.19769 * 61.74516 * 19 18 17 21 21 H 0.97005 * 119.99699 * 359.72432 * 1 2 3 22 22 H 1.08006 * 126.26275 * 0.02768 * 10 9 7 23 23 H 1.08005 * 125.17643 * 179.72027 * 12 11 10 24 24 H 1.09004 * 109.52435 * 302.30915 * 16 14 13 25 25 H 1.09001 * 109.52569 * 62.43876 * 16 14 13 26 26 H 1.08994 * 109.50942 * 177.60050 * 17 16 14 27 27 H 1.09009 * 109.50009 * 297.72071 * 17 16 14 28 28 H 1.08999 * 109.46338 * 60.84307 * 18 17 16 29 29 H 1.09002 * 109.46154 * 180.81096 * 18 17 16 30 30 H 1.00902 * 111.00050 * 297.64625 * 19 18 17 31 31 H 1.08995 * 109.46243 * 178.24417 * 20 19 18 32 32 H 1.08999 * 109.46319 * 58.26809 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 1.2777 2.7464 0.0006 5 1 3.0963 1.6963 1.2125 6 1 3.0964 1.6963 -1.2125 7 6 2.0089 -1.2131 -0.0058 8 1 3.0889 -1.2132 -0.0062 9 6 1.3085 -2.4260 -0.0121 10 6 -0.0771 -2.5976 -0.0073 11 7 -0.3174 -3.9059 -0.0191 12 6 0.8128 -4.5685 -0.0224 13 7 1.8481 -3.7009 -0.0183 14 6 3.2722 -4.0440 -0.0206 15 1 3.8668 -3.1304 -0.0156 16 6 3.5996 -4.8594 -1.2745 17 6 5.0757 -5.2648 -1.2393 18 6 5.3508 -6.0604 0.0388 19 7 5.0226 -5.2371 1.2096 20 6 3.5996 -4.8751 1.2222 21 1 -0.4850 0.8401 0.0040 22 1 -0.8182 -1.8119 0.0018 23 1 0.9030 -5.6448 -0.0273 24 1 2.9768 -5.7536 -1.3005 25 1 3.4078 -4.2560 -2.1618 26 1 5.3046 -5.8816 -2.1083 27 1 5.6991 -4.3707 -1.2525 28 1 4.7373 -6.9614 0.0449 29 1 6.4042 -6.3383 0.0740 30 1 5.6054 -4.4142 1.2478 31 1 3.3811 -4.2921 2.1168 32 1 2.9943 -5.7816 1.2227 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261161408.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:27 Heat of formation + Delta-G solvation = 23.176785 kcal Electronic energy + Delta-G solvation = -15265.285405 eV Core-core repulsion = 12838.948405 eV Total energy + Delta-G solvation = -2426.336999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.02996 -39.46980 -35.56444 -34.38084 -32.52550 -30.92194 -29.51191 -26.69741 -24.70518 -24.10098 -22.22472 -21.63428 -20.36411 -18.98443 -17.54035 -16.85233 -16.40578 -15.96883 -15.64463 -15.41990 -14.68445 -14.58597 -14.11952 -13.92908 -13.46158 -13.26180 -12.95153 -12.88387 -12.82598 -12.36082 -12.25706 -11.97142 -11.71476 -11.60756 -11.27910 -10.23953 -10.23140 -9.36264 -8.91105 -8.52723 -6.28749 1.29823 1.38716 1.52540 1.85692 2.17311 2.47265 2.77943 3.34798 3.36671 3.59125 3.89601 3.94232 4.06172 4.18867 4.34681 4.41249 4.54288 4.77696 4.83866 4.95629 4.97674 5.04075 5.11102 5.12670 5.26236 5.66793 5.81767 5.90184 6.02085 6.38449 6.51677 6.85646 6.97922 7.25784 7.97591 8.44825 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.009464 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.219755 B = 2957.873688 C = 3570.990564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.025 3.975 3 Si 1.001 2.999 4 H -0.269 1.269 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.472 4.472 8 H 0.076 0.924 9 C 0.155 3.845 10 C -0.182 4.182 11 N -0.523 5.523 12 C 0.074 3.926 13 N -0.487 5.487 14 C 0.115 3.885 15 H 0.076 0.924 16 C -0.121 4.121 17 C -0.143 4.143 18 C 0.055 3.945 19 N -0.677 5.677 20 C 0.067 3.933 21 H 0.285 0.715 22 H 0.160 0.840 23 H 0.200 0.800 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.348 0.652 31 H 0.061 0.939 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.053 -5.834 -0.934 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.182 1.182 6 H -0.184 1.184 7 C -0.507 4.507 8 H 0.095 0.905 9 C 0.043 3.957 10 C -0.328 4.328 11 N -0.242 5.242 12 C -0.202 4.202 13 N -0.179 5.179 14 C 0.009 3.991 15 H 0.094 0.906 16 C -0.160 4.160 17 C -0.183 4.183 18 C -0.074 4.074 19 N -0.306 5.306 20 C -0.064 4.064 21 H 0.096 0.904 22 H 0.177 0.823 23 H 0.217 0.783 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.166 0.834 31 H 0.079 0.921 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.084 -6.692 -0.500 13.822 hybrid contribution 0.384 1.850 -0.803 2.053 sum 12.468 -4.842 -1.303 13.439 Atomic orbital electron populations 1.69743 1.09023 1.29892 1.37662 1.26740 0.95685 1.04379 0.92025 0.84964 0.78202 0.74803 0.79901 1.19386 1.18245 1.18407 1.18635 0.94078 0.89169 1.48854 0.90539 1.19301 0.93072 0.84451 0.98893 1.23185 0.94804 0.91382 1.23439 1.69437 1.28670 1.07064 1.19072 1.24205 0.82272 0.96774 1.16908 1.45285 1.06194 1.05737 1.60688 1.22049 0.79500 0.99098 0.98444 0.90565 1.21889 0.98782 0.99461 0.95821 1.22239 0.93468 1.01425 1.01134 1.22187 1.02944 0.96053 0.86206 1.60763 1.02907 1.24796 1.42094 1.22146 0.90647 0.98582 0.95058 0.90418 0.82275 0.78330 0.91209 0.93538 0.89001 0.91458 0.90561 0.87947 0.83386 0.92068 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.92 10.35 21.86 0.23 -45.70 16 2 C 0.02 1.29 5.50 85.28 0.47 1.76 16 3 Si 1.00 38.69 29.56 68.60 2.03 40.72 16 4 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.47 -25.64 9.06 23.16 0.21 -25.43 16 8 H 0.08 3.84 6.84 -2.91 -0.02 3.82 16 9 C 0.16 8.79 6.74 38.88 0.26 9.05 16 10 C -0.18 -11.06 10.88 84.85 0.92 -10.13 16 11 N -0.52 -29.68 11.18 -196.90 -2.20 -31.88 16 12 C 0.07 3.53 11.46 180.10 2.06 5.59 16 13 N -0.49 -22.88 2.66 -497.02 -1.32 -24.20 16 14 C 0.11 4.06 2.98 45.05 0.13 4.19 16 15 H 0.08 2.87 6.83 -2.38 -0.02 2.85 16 16 C -0.12 -3.53 5.36 30.67 0.16 -3.37 16 17 C -0.14 -2.87 6.08 30.65 0.19 -2.69 16 18 C 0.06 1.01 6.55 86.33 0.57 1.58 16 19 N -0.68 -15.65 6.87 -514.00 -3.53 -19.18 16 20 C 0.07 2.01 5.90 86.33 0.51 2.52 16 21 H 0.29 14.20 8.30 -92.70 -0.77 13.44 16 22 H 0.16 10.27 5.78 -2.91 -0.02 10.25 16 23 H 0.20 7.70 8.06 -2.91 -0.02 7.68 16 24 H 0.07 1.99 7.89 -2.38 -0.02 1.97 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.35 7.37 8.86 -89.69 -0.79 6.57 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.08 2.33 7.92 -2.39 -0.02 2.31 16 Total: -1.00 -67.14 261.78 1.02 -66.12 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.33 Total: 31.05 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 5.49 Total: -16.94 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -6.83 Total: -120.96 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -67.14 1.02 -66.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161408.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.299 kcal (2) G-P(sol) polarization free energy of solvation -67.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds