Wall clock time and date at job start Mon Mar 30 2020 03:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86805 * 119.99556 * 2 1 4 4 H 1.48498 * 109.46731 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47270 * 300.00031 * 3 2 1 6 6 H 1.48506 * 109.47001 * 60.00069 * 3 2 1 7 7 C 1.40061 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.40061 * 120.00193 * 359.97438 * 7 2 1 10 10 C 1.39617 * 127.06171 * 359.96022 * 9 7 2 11 11 N 1.33020 * 107.46666 * 180.02562 * 10 9 7 12 12 C 1.31016 * 109.97578 * 359.76423 * 11 10 9 13 13 N 1.35074 * 109.64805 * 0.38845 * 12 11 10 14 14 C 1.46493 * 126.48562 * 179.88407 * 13 12 11 15 15 H 1.08993 * 109.53865 * 179.78580 * 14 13 12 16 16 C 1.53124 * 109.50274 * 299.88317 * 14 13 12 17 17 C 1.53123 * 109.16220 * 177.59211 * 16 14 13 18 18 C 1.53032 * 109.28121 * 302.35028 * 17 16 14 19 19 N 1.46846 * 109.52443 * 59.17535 * 18 17 16 20 20 C 1.46846 * 111.19780 * 298.25976 * 19 18 17 21 21 H 0.97000 * 120.00047 * 0.02562 * 1 2 3 22 22 H 1.08008 * 126.26619 * 0.03537 * 10 9 7 23 23 H 1.08000 * 125.17193 * 180.27221 * 12 11 10 24 24 H 1.09001 * 109.52183 * 57.69093 * 16 14 13 25 25 H 1.09002 * 109.57311 * 297.53229 * 16 14 13 26 26 H 1.09001 * 109.50279 * 182.40035 * 17 16 14 27 27 H 1.09005 * 109.53033 * 62.30918 * 17 16 14 28 28 H 1.09009 * 109.45791 * 299.16259 * 18 17 16 29 29 H 1.08995 * 109.46430 * 179.19745 * 18 17 16 30 30 H 1.00895 * 111.00149 * 62.35813 * 19 18 17 31 31 H 1.09008 * 109.46456 * 181.75946 * 20 19 18 32 32 H 1.09003 * 109.46474 * 301.72450 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 3.7024 1.3465 0.0006 5 1 1.8837 2.3965 -1.2124 6 1 1.8836 2.3965 1.2126 7 6 2.0089 -1.2130 0.0005 8 1 3.0889 -1.2129 0.0010 9 6 1.3086 -2.4259 0.0016 10 6 -0.0769 -2.5977 0.0031 11 7 -0.3171 -3.9060 0.0043 12 6 0.8132 -4.5686 -0.0013 13 7 1.8483 -3.7008 0.0021 14 6 3.2725 -4.0438 0.0003 15 1 3.8674 -3.1306 0.0002 16 6 3.6014 -4.8680 1.2482 17 6 5.0776 -5.2731 1.2083 18 6 5.3512 -6.0596 -0.0757 19 7 5.0217 -5.2280 -1.2402 20 6 3.5985 -4.8660 -1.2486 21 1 -0.4850 0.8400 -0.0004 22 1 -0.8181 -1.8120 0.0030 23 1 0.9034 -5.6448 -0.0060 24 1 2.9787 -5.7624 1.2685 25 1 3.4114 -4.2714 2.1404 26 1 5.3075 -5.8960 2.0727 27 1 5.7014 -4.3794 1.2275 28 1 4.7376 -6.9605 -0.0874 29 1 6.4045 -6.3372 -0.1140 30 1 5.6043 -4.4049 -1.2733 31 1 3.3788 -4.2767 -2.1389 32 1 2.9932 -5.7725 -1.2548 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261161409.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:30 Heat of formation + Delta-G solvation = 23.115239 kcal Electronic energy + Delta-G solvation = -15265.718391 eV Core-core repulsion = 12839.378723 eV Total energy + Delta-G solvation = -2426.339668 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.03148 -39.47008 -35.56615 -34.38098 -32.52560 -30.92337 -29.51334 -26.70093 -24.70505 -24.10154 -22.22514 -21.63558 -20.36562 -18.98809 -17.54744 -16.85228 -16.40142 -15.96608 -15.64442 -15.41935 -14.68197 -14.60217 -14.11836 -13.93136 -13.46603 -13.26177 -12.97604 -12.90060 -12.79643 -12.36120 -12.26641 -11.92322 -11.71294 -11.60292 -11.30785 -10.23804 -10.23442 -9.36196 -8.91108 -8.53140 -6.28933 1.27376 1.38736 1.54681 1.85207 2.17117 2.47075 2.77739 3.34780 3.36510 3.59087 3.89635 3.94273 4.06158 4.18886 4.34649 4.41257 4.54254 4.77703 4.83795 4.95612 4.97674 5.03993 5.11123 5.13151 5.26227 5.66873 5.81660 5.90166 6.01983 6.38393 6.51971 6.85663 6.97803 7.25625 7.97414 8.44856 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.009464 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.245131 B = 2957.844973 C = 3571.007146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.025 3.975 3 Si 1.002 2.998 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.471 4.471 8 H 0.076 0.924 9 C 0.155 3.845 10 C -0.181 4.181 11 N -0.523 5.523 12 C 0.074 3.926 13 N -0.486 5.486 14 C 0.115 3.885 15 H 0.076 0.924 16 C -0.121 4.121 17 C -0.143 4.143 18 C 0.055 3.945 19 N -0.677 5.677 20 C 0.067 3.933 21 H 0.285 0.715 22 H 0.160 0.840 23 H 0.200 0.800 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.348 0.652 31 H 0.061 0.939 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.057 -5.883 0.879 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.189 4.189 3 Si 0.822 3.178 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.506 4.506 8 H 0.094 0.906 9 C 0.042 3.958 10 C -0.328 4.328 11 N -0.243 5.243 12 C -0.201 4.201 13 N -0.179 5.179 14 C 0.009 3.991 15 H 0.094 0.906 16 C -0.159 4.159 17 C -0.183 4.183 18 C -0.074 4.074 19 N -0.306 5.306 20 C -0.065 4.065 21 H 0.096 0.904 22 H 0.177 0.823 23 H 0.217 0.783 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.166 0.834 31 H 0.079 0.921 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.096 -6.741 0.441 13.855 hybrid contribution 0.367 1.857 0.810 2.059 sum 12.463 -4.884 1.251 13.444 Atomic orbital electron populations 1.69752 1.09019 1.29758 1.37825 1.26737 0.95684 1.04384 0.92049 0.84864 0.78866 0.75350 0.78745 1.17803 1.19132 1.19239 1.18682 0.94062 0.89148 1.48700 0.90569 1.19307 0.93070 0.84465 0.98925 1.23185 0.94811 0.91381 1.23385 1.69444 1.28662 1.07059 1.19089 1.24210 0.82270 0.96780 1.16859 1.45287 1.06196 1.05741 1.60665 1.22041 0.79490 0.99075 0.98458 0.90607 1.21888 0.98768 0.99415 0.95869 1.22238 0.93475 1.01458 1.01105 1.22186 1.02940 0.96017 0.86249 1.60761 1.02891 1.24414 1.42488 1.22152 0.90654 0.98659 0.94994 0.90441 0.82274 0.78315 0.91195 0.93520 0.88997 0.91478 0.90550 0.87953 0.83397 0.92060 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.92 10.35 21.85 0.23 -45.69 16 2 C 0.02 1.27 5.50 85.28 0.47 1.73 16 3 Si 1.00 38.76 29.56 68.60 2.03 40.79 16 4 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 6 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.47 -25.57 9.06 23.15 0.21 -25.36 16 8 H 0.08 3.85 6.84 -2.91 -0.02 3.83 16 9 C 0.15 8.75 6.74 38.87 0.26 9.01 16 10 C -0.18 -11.02 10.88 84.85 0.92 -10.10 16 11 N -0.52 -29.66 11.18 -196.91 -2.20 -31.87 16 12 C 0.07 3.54 11.46 180.10 2.06 5.61 16 13 N -0.49 -22.86 2.66 -497.05 -1.32 -24.18 16 14 C 0.11 4.07 2.98 45.05 0.13 4.20 16 15 H 0.08 2.86 6.83 -2.39 -0.02 2.84 16 16 C -0.12 -3.53 5.36 30.68 0.16 -3.36 16 17 C -0.14 -2.88 6.08 30.65 0.19 -2.69 16 18 C 0.06 1.01 6.55 86.32 0.57 1.58 16 19 N -0.68 -15.66 6.87 -514.00 -3.53 -19.19 16 20 C 0.07 2.00 5.89 86.33 0.51 2.51 16 21 H 0.28 14.11 8.30 -92.71 -0.77 13.34 16 22 H 0.16 10.27 5.78 -2.91 -0.02 10.25 16 23 H 0.20 7.69 8.06 -2.91 -0.02 7.67 16 24 H 0.07 1.99 7.89 -2.39 -0.02 1.98 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.35 7.38 8.86 -89.70 -0.79 6.59 16 31 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.08 2.33 7.92 -2.39 -0.02 2.31 16 Total: -1.00 -67.17 261.78 1.01 -66.15 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.33 Total: 30.84 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 5.49 Total: -16.86 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -6.83 Total: -120.92 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -67.17 1.01 -66.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161409.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.270 kcal (2) G-P(sol) polarization free energy of solvation -67.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds