Wall clock time and date at job start Mon Mar 30 2020 03:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86802 * 120.00039 * 2 1 4 4 H 1.48500 * 109.47310 * 89.99402 * 3 2 1 5 5 H 1.48497 * 109.46875 * 329.99489 * 3 2 1 6 6 H 1.48506 * 109.47013 * 209.99901 * 3 2 1 7 7 C 1.40074 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99496 * 16.10140 * 7 2 1 9 9 C 1.40062 * 120.00048 * 196.09454 * 7 2 1 10 10 C 1.39622 * 127.06224 * 19.55813 * 9 7 2 11 11 N 1.33018 * 107.46336 * 179.97438 * 10 9 7 12 12 C 1.31015 * 109.98219 * 0.02562 * 11 10 9 13 13 N 1.35074 * 109.64482 * 359.74409 * 12 11 10 14 14 C 1.46497 * 126.48881 * 180.25937 * 13 12 11 15 15 C 1.53112 * 109.52245 * 59.84869 * 14 13 12 16 16 C 1.53040 * 109.27861 * 182.44444 * 15 14 13 17 17 N 1.46848 * 109.52479 * 59.18389 * 16 15 14 18 18 C 1.46852 * 111.19433 * 298.25931 * 17 16 15 19 19 C 1.53038 * 109.52357 * 61.74246 * 18 17 16 20 20 H 0.97006 * 119.99618 * 175.06410 * 1 2 3 21 21 H 1.08004 * 126.26404 * 359.97438 * 10 9 7 22 22 H 1.07993 * 125.17424 * 180.02562 * 12 11 10 23 23 H 1.08997 * 109.52923 * 180.02562 * 14 13 12 24 24 H 1.08997 * 109.50996 * 302.39046 * 15 14 13 25 25 H 1.09000 * 109.50229 * 62.51049 * 15 14 13 26 26 H 1.09000 * 109.46548 * 299.16498 * 16 15 14 27 27 H 1.09008 * 109.46217 * 179.19817 * 16 15 14 28 28 H 1.00894 * 111.00078 * 174.16431 * 17 16 15 29 29 H 1.09001 * 109.46090 * 301.71940 * 18 17 16 30 30 H 1.09000 * 109.45769 * 181.75592 * 18 17 16 31 31 H 1.09003 * 109.50331 * 180.87819 * 19 18 17 32 32 H 1.08994 * 109.50304 * 60.76084 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4899 2.0465 1.4001 5 1 1.4400 2.6526 -0.7001 6 1 3.5401 1.4401 -0.7000 7 6 2.0089 -1.2131 0.0005 8 1 1.5006 -2.1301 -0.2585 9 6 3.3684 -1.2366 0.3368 10 6 4.0777 -0.2627 1.0423 11 7 5.3369 -0.6798 1.1420 12 6 5.4717 -1.8417 0.5520 13 7 4.2835 -2.2329 0.0425 14 6 4.0145 -3.4751 -0.6861 15 6 4.3424 -4.6740 0.2079 16 6 4.1177 -5.9674 -0.5787 17 7 4.9766 -5.9729 -1.7698 18 6 4.6479 -4.8573 -2.6666 19 6 4.8885 -3.5309 -1.9422 20 1 -0.4850 -0.8370 -0.0723 21 1 3.6773 0.6603 1.4351 22 1 6.3917 -2.4035 0.4871 23 1 2.9632 -3.5096 -0.9717 24 1 5.3836 -4.6174 0.5253 25 1 3.6934 -4.6633 1.0835 26 1 3.0732 -6.0301 -0.8839 27 1 4.3640 -6.8227 0.0506 28 1 4.9172 -6.8558 -2.2544 29 1 3.6009 -4.9253 -2.9620 30 1 5.2793 -4.9064 -3.5537 31 1 4.6296 -2.7033 -2.6027 32 1 5.9383 -3.4563 -1.6587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261162362.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:22 Heat of formation + Delta-G solvation = 41.718088 kcal Electronic energy + Delta-G solvation = -15309.614731 eV Core-core repulsion = 12884.081743 eV Total energy + Delta-G solvation = -2425.532988 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43616 -38.13091 -33.64997 -33.33128 -30.78404 -29.79370 -28.76865 -24.22655 -23.47532 -22.92224 -20.89872 -19.85953 -18.49427 -17.81916 -16.75472 -15.77419 -14.63668 -14.22218 -14.12875 -13.83554 -13.72533 -13.30613 -12.68275 -12.56410 -12.22758 -12.11616 -12.08567 -11.17384 -11.08578 -10.79460 -10.48183 -10.39014 -9.90977 -9.60143 -9.14061 -8.56064 -8.50710 -8.28398 -7.41430 -7.09507 -4.41143 3.14871 3.35797 3.59660 3.69199 3.96161 4.13690 4.14447 4.45732 4.86570 4.98640 5.17997 5.20559 5.23138 5.43495 5.55597 5.63516 5.72163 5.80427 5.99852 6.00860 6.12690 6.33516 6.38526 6.56811 6.93070 7.00679 7.26385 7.37624 7.61243 7.66201 8.33120 8.41836 8.73025 8.87565 9.62287 10.12386 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035874 B = 0.009361 C = 0.008373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.311940 B = 2990.256189 C = 3343.081890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.056 3.944 3 Si 1.077 2.923 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.262 1.262 7 C -0.517 4.517 8 H 0.069 0.931 9 C 0.190 3.810 10 C -0.203 4.203 11 N -0.470 5.470 12 C 0.073 3.927 13 N -0.488 5.488 14 C 0.154 3.846 15 C -0.124 4.124 16 C 0.062 3.938 17 N -0.690 5.690 18 C 0.062 3.938 19 C -0.122 4.122 20 H 0.282 0.718 21 H 0.145 0.855 22 H 0.170 0.830 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.341 0.659 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.198 -9.936 -4.871 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.163 4.163 3 Si 0.905 3.095 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.187 1.187 7 C -0.552 4.552 8 H 0.087 0.913 9 C 0.078 3.922 10 C -0.349 4.349 11 N -0.187 5.187 12 C -0.202 4.202 13 N -0.180 5.180 14 C 0.049 3.951 15 C -0.163 4.163 16 C -0.068 4.068 17 N -0.322 5.322 18 C -0.068 4.068 19 C -0.161 4.161 20 H 0.093 0.907 21 H 0.162 0.838 22 H 0.187 0.813 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.095 0.905 28 H 0.158 0.842 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.106 -7.652 -4.138 10.628 hybrid contribution -1.481 -2.670 -0.779 3.151 sum 4.625 -10.322 -4.917 12.334 Atomic orbital electron populations 1.70610 1.07604 1.32495 1.34410 1.26976 0.95462 1.03876 0.89970 0.83552 0.75146 0.72714 0.78123 1.20320 1.22216 1.18679 1.19415 0.91964 0.96816 1.47025 0.91301 1.19172 0.90396 0.87363 0.95315 1.22035 0.91222 1.04118 1.17533 1.69318 1.20635 1.09810 1.18957 1.23621 0.89893 0.96826 1.09862 1.45215 1.09112 1.17112 1.46545 1.20947 1.00169 0.82838 0.91191 1.21957 1.03060 0.93078 0.98224 1.21886 0.94442 0.98218 0.92233 1.60297 1.56728 1.06174 1.08983 1.21895 0.98891 0.90961 0.95062 1.21927 1.01073 0.96543 0.96577 0.90704 0.83819 0.81298 0.89457 0.90612 0.91166 0.95067 0.90548 0.84193 0.95020 0.90491 0.90913 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.62 13.66 55.56 0.76 -21.86 16 2 C 0.06 1.52 5.51 -17.28 -0.10 1.42 16 3 Si 1.08 25.69 24.94 -169.99 -4.24 21.45 16 4 H -0.28 -6.40 6.61 56.52 0.37 -6.02 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.39 6.68 56.52 0.38 -6.01 16 7 C -0.52 -14.08 9.32 -38.21 -0.36 -14.43 16 8 H 0.07 1.90 7.30 -52.49 -0.38 1.51 16 9 C 0.19 5.04 6.28 -83.68 -0.53 4.52 16 10 C -0.20 -5.50 9.32 -16.52 -0.15 -5.66 16 11 N -0.47 -12.23 11.18 -13.59 -0.15 -12.38 16 12 C 0.07 1.66 11.43 -89.92 -1.03 0.64 16 13 N -0.49 -11.14 2.66 -108.41 -0.29 -11.43 16 14 C 0.15 2.81 2.90 -67.81 -0.20 2.61 16 15 C -0.12 -1.94 5.45 -26.65 -0.15 -2.08 16 16 C 0.06 0.76 6.55 -3.83 -0.03 0.74 16 17 N -0.69 -7.98 6.85 -113.81 -0.78 -8.76 16 18 C 0.06 0.76 6.55 -3.83 -0.03 0.73 16 19 C -0.12 -1.91 5.45 -26.65 -0.15 -2.05 16 20 H 0.28 7.47 8.73 -40.82 -0.36 7.11 16 21 H 0.14 3.83 4.32 -52.48 -0.23 3.60 16 22 H 0.17 3.27 8.06 -52.49 -0.42 2.84 16 23 H 0.09 1.73 6.97 -51.93 -0.36 1.37 16 24 H 0.08 1.19 7.89 -51.93 -0.41 0.78 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.34 3.08 8.90 -39.29 -0.35 2.73 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.19 7.88 -51.93 -0.41 0.78 16 LS Contribution 257.35 15.07 3.88 3.88 Total: -1.00 -30.26 257.35 -7.82 -38.08 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.30 Total: 4.59 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.70 Total: -13.56 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.46 Total: -54.43 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -4.24 Total: 21.45 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.26 -7.82 -38.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261162362.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.797 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds