Wall clock time and date at job start Mon Mar 30 2020 03:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86802 * 120.00039 * 2 1 4 4 H 1.48500 * 109.47310 * 89.99402 * 3 2 1 5 5 H 1.48497 * 109.46875 * 329.99489 * 3 2 1 6 6 H 1.48506 * 109.47013 * 209.99901 * 3 2 1 7 7 C 1.40074 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99496 * 16.10140 * 7 2 1 9 9 C 1.40062 * 120.00048 * 196.09454 * 7 2 1 10 10 C 1.39622 * 127.06224 * 19.55813 * 9 7 2 11 11 N 1.33018 * 107.46336 * 179.97438 * 10 9 7 12 12 C 1.31015 * 109.98219 * 0.02562 * 11 10 9 13 13 N 1.35074 * 109.64482 * 359.74409 * 12 11 10 14 14 C 1.46497 * 126.48881 * 180.25937 * 13 12 11 15 15 C 1.53112 * 109.52245 * 59.84869 * 14 13 12 16 16 C 1.53040 * 109.27861 * 182.44444 * 15 14 13 17 17 N 1.46848 * 109.52479 * 59.18389 * 16 15 14 18 18 C 1.46852 * 111.19433 * 298.25931 * 17 16 15 19 19 C 1.53038 * 109.52357 * 61.74246 * 18 17 16 20 20 H 0.97006 * 119.99618 * 175.06410 * 1 2 3 21 21 H 1.08004 * 126.26404 * 359.97438 * 10 9 7 22 22 H 1.07993 * 125.17424 * 180.02562 * 12 11 10 23 23 H 1.08997 * 109.52923 * 180.02562 * 14 13 12 24 24 H 1.08997 * 109.50996 * 302.39046 * 15 14 13 25 25 H 1.09000 * 109.50229 * 62.51049 * 15 14 13 26 26 H 1.09000 * 109.46548 * 299.16498 * 16 15 14 27 27 H 1.09008 * 109.46217 * 179.19817 * 16 15 14 28 28 H 1.00894 * 111.00078 * 174.16431 * 17 16 15 29 29 H 1.09001 * 109.46090 * 301.71940 * 18 17 16 30 30 H 1.09000 * 109.45769 * 181.75592 * 18 17 16 31 31 H 1.09003 * 109.50331 * 180.87819 * 19 18 17 32 32 H 1.08994 * 109.50304 * 60.76084 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4899 2.0465 1.4001 5 1 1.4400 2.6526 -0.7001 6 1 3.5401 1.4401 -0.7000 7 6 2.0089 -1.2131 0.0005 8 1 1.5006 -2.1301 -0.2585 9 6 3.3684 -1.2366 0.3368 10 6 4.0777 -0.2627 1.0423 11 7 5.3369 -0.6798 1.1420 12 6 5.4717 -1.8417 0.5520 13 7 4.2835 -2.2329 0.0425 14 6 4.0145 -3.4751 -0.6861 15 6 4.3424 -4.6740 0.2079 16 6 4.1177 -5.9674 -0.5787 17 7 4.9766 -5.9729 -1.7698 18 6 4.6479 -4.8573 -2.6666 19 6 4.8885 -3.5309 -1.9422 20 1 -0.4850 -0.8370 -0.0723 21 1 3.6773 0.6603 1.4351 22 1 6.3917 -2.4035 0.4871 23 1 2.9632 -3.5096 -0.9717 24 1 5.3836 -4.6174 0.5253 25 1 3.6934 -4.6633 1.0835 26 1 3.0732 -6.0301 -0.8839 27 1 4.3640 -6.8227 0.0506 28 1 4.9172 -6.8558 -2.2544 29 1 3.6009 -4.9253 -2.9620 30 1 5.2793 -4.9064 -3.5537 31 1 4.6296 -2.7033 -2.6027 32 1 5.9383 -3.4563 -1.6587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261162362.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:22 Heat of formation + Delta-G solvation = 20.747488 kcal Electronic energy + Delta-G solvation = -15310.524084 eV Core-core repulsion = 12884.081743 eV Total energy + Delta-G solvation = -2426.442341 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.29878 -39.37533 -35.70724 -34.81256 -31.90124 -31.63154 -30.50715 -26.24090 -24.86104 -24.04806 -22.73596 -21.47216 -20.15191 -19.72427 -18.13981 -17.24476 -16.03789 -15.88555 -15.67507 -15.54336 -15.13035 -14.85403 -14.28508 -14.19218 -13.99212 -13.87826 -13.28653 -12.75213 -12.50801 -12.30385 -11.96809 -11.77276 -11.66549 -11.48788 -11.14517 -10.50997 -10.15367 -9.49742 -9.47900 -9.14874 -6.50759 1.20006 1.41644 1.68541 1.79093 2.18954 2.26728 2.47778 3.09091 3.20142 3.58399 3.79006 3.94543 4.11525 4.12041 4.28108 4.32268 4.48531 4.53684 4.70337 4.78272 4.83615 4.94025 4.98694 5.05807 5.14124 5.31666 5.53408 5.71523 5.92965 6.23357 6.39850 6.49090 6.68723 6.98916 7.64221 8.03196 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035874 B = 0.009361 C = 0.008373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.311940 B = 2990.256189 C = 3343.081890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.026 3.974 3 Si 1.110 2.890 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.165 3.835 10 C -0.220 4.220 11 N -0.502 5.502 12 C 0.103 3.897 13 N -0.485 5.485 14 C 0.144 3.856 15 C -0.117 4.117 16 C 0.068 3.932 17 N -0.688 5.688 18 C 0.068 3.932 19 C -0.116 4.116 20 H 0.278 0.722 21 H 0.142 0.858 22 H 0.212 0.788 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.030 0.970 27 H 0.101 0.899 28 H 0.360 0.640 29 H 0.030 0.970 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.986 -11.433 -5.526 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.188 4.188 3 Si 0.934 3.066 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.070 0.930 9 C 0.051 3.949 10 C -0.365 4.365 11 N -0.220 5.220 12 C -0.174 4.174 13 N -0.175 5.175 14 C 0.041 3.959 15 C -0.156 4.156 16 C -0.061 4.061 17 N -0.322 5.322 18 C -0.062 4.062 19 C -0.155 4.155 20 H 0.088 0.912 21 H 0.159 0.841 22 H 0.228 0.772 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.119 0.881 28 H 0.180 0.820 29 H 0.048 0.952 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.863 -9.189 -4.811 13.016 hybrid contribution -1.902 -2.341 -0.582 3.072 sum 5.961 -11.530 -5.394 14.056 Atomic orbital electron populations 1.70652 1.07926 1.32273 1.36278 1.27829 0.95669 1.05876 0.89455 0.83100 0.73972 0.70959 0.78573 1.19405 1.20484 1.19798 1.19377 0.92683 0.96422 1.48372 0.93044 1.19180 0.90655 0.88812 0.96281 1.22176 0.91976 1.04459 1.17840 1.69336 1.20215 1.11509 1.20980 1.24454 0.90885 0.95743 1.06321 1.45535 1.08460 1.17740 1.45775 1.21316 0.99772 0.82036 0.92788 1.21899 1.02740 0.93399 0.97570 1.21830 0.94668 0.96994 0.92654 1.60242 1.56180 1.06980 1.08761 1.21841 0.99495 0.89392 0.95451 1.21883 1.00343 0.98266 0.94997 0.91168 0.84130 0.77178 0.91714 0.90159 0.92761 0.95208 0.88060 0.81951 0.95159 0.87963 0.92423 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.25 13.66 21.86 0.30 -46.95 16 2 C 0.03 1.45 5.51 85.28 0.47 1.92 16 3 Si 1.11 52.55 24.94 68.60 1.71 54.26 16 4 H -0.27 -12.18 6.61 99.48 0.66 -11.53 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -13.26 6.68 99.48 0.66 -12.59 16 7 C -0.53 -29.89 9.32 23.16 0.22 -29.67 16 8 H 0.05 2.97 7.30 -2.91 -0.02 2.94 16 9 C 0.17 8.84 6.28 38.88 0.24 9.09 16 10 C -0.22 -11.92 9.32 84.85 0.79 -11.13 16 11 N -0.50 -25.58 11.18 -196.91 -2.20 -27.78 16 12 C 0.10 4.50 11.43 180.10 2.06 6.56 16 13 N -0.49 -21.80 2.66 -496.90 -1.32 -23.13 16 14 C 0.14 5.14 2.90 45.07 0.13 5.27 16 15 C -0.12 -3.42 5.45 30.65 0.17 -3.25 16 16 C 0.07 1.47 6.55 86.33 0.57 2.04 16 17 N -0.69 -13.25 6.85 -513.97 -3.52 -16.77 16 18 C 0.07 1.46 6.55 86.32 0.57 2.03 16 19 C -0.12 -3.37 5.45 30.65 0.17 -3.21 16 20 H 0.28 15.21 8.73 -92.70 -0.81 14.40 16 21 H 0.14 7.54 4.32 -2.91 -0.01 7.52 16 22 H 0.21 7.26 8.06 -2.91 -0.02 7.24 16 23 H 0.06 2.61 6.97 -2.39 -0.02 2.59 16 24 H 0.08 2.27 7.89 -2.39 -0.02 2.25 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.10 1.74 8.14 -2.38 -0.02 1.73 16 28 H 0.36 4.95 8.90 -89.70 -0.80 4.15 16 29 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.26 7.88 -2.39 -0.02 2.25 16 Total: -1.00 -65.33 257.35 0.54 -64.80 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.19 Total: 15.93 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 5.38 Total: -20.36 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -6.74 Total: -114.63 kcal Atomic # 14 Polarization: 52.55 SS G_CDS: 1.71 Total: 54.26 kcal Total: -65.33 0.54 -64.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261162362.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.546 kcal (2) G-P(sol) polarization free energy of solvation -65.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds