Wall clock time and date at job start Mon Mar 30 2020 02:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00186 * 2 1 4 4 C 1.52998 * 109.46963 * 269.99893 * 3 2 1 5 5 O 1.42900 * 109.46928 * 65.00132 * 4 3 2 6 6 C 1.38861 * 120.00085 * 179.97438 * 2 1 3 7 7 C 1.39560 * 119.84306 * 179.72553 * 6 2 1 8 8 C 1.36351 * 120.15797 * 179.72140 * 7 6 2 9 9 C 1.40884 * 119.83328 * 0.55363 * 8 7 6 10 10 C 1.41138 * 120.15183 * 179.70034 * 9 8 7 11 11 H 1.07996 * 119.99976 * 204.62556 * 10 9 8 12 12 C 1.39874 * 120.00202 * 24.62890 * 10 9 8 13 13 N 1.30905 * 119.99410 * 17.95055 * 12 10 9 14 14 Si 1.86793 * 120.00035 * 197.95704 * 12 10 9 15 15 H 1.48497 * 109.47098 * 90.00100 * 14 12 10 16 16 H 1.48500 * 109.46778 * 209.99570 * 14 12 10 17 17 H 1.48497 * 109.47382 * 329.99723 * 14 12 10 18 18 C 1.40882 * 119.69079 * 359.71650 * 9 8 7 19 19 C 1.36335 * 119.83670 * 0.02562 * 18 9 8 20 20 H 1.08995 * 109.47532 * 90.00041 * 1 2 3 21 21 H 1.08999 * 109.47419 * 210.00340 * 1 2 3 22 22 H 1.09006 * 109.47141 * 329.99473 * 1 2 3 23 23 H 1.09001 * 109.47007 * 150.00275 * 3 2 1 24 24 H 1.08998 * 109.46834 * 30.00382 * 3 2 1 25 25 H 1.09001 * 109.46961 * 184.99434 * 4 3 2 26 26 H 1.08990 * 109.47461 * 305.00082 * 4 3 2 27 27 H 0.96705 * 114.00261 * 179.97438 * 5 4 3 28 28 H 1.07994 * 119.92230 * 359.97438 * 7 6 2 29 29 H 1.07999 * 120.07660 * 180.27663 * 8 7 6 30 30 H 0.97005 * 119.99758 * 179.97438 * 13 12 10 31 31 H 1.07997 * 120.07834 * 179.97438 * 18 9 8 32 32 H 1.08003 * 119.91518 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 8 1.2060 1.9935 -2.0813 6 6 2.1593 -1.2026 0.0005 7 6 3.5548 -1.1987 -0.0053 8 6 4.2431 -2.3758 0.0010 9 6 3.5419 -3.5977 0.0015 10 6 4.2476 -4.8200 0.0015 11 1 3.7811 -5.7128 -0.3879 12 6 5.5510 -4.8751 0.5059 13 7 5.9925 -3.9195 1.2841 14 14 6.6617 -6.3120 0.0689 15 1 7.4193 -5.9936 -1.1680 16 1 7.6128 -6.5588 1.1823 17 1 5.8359 -7.5257 -0.1550 18 6 2.1331 -3.5938 0.0016 19 6 1.4581 -2.4093 0.0007 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5139 23 1 3.1499 1.1383 0.5138 24 1 1.6084 2.0283 0.5139 25 1 3.0732 2.6063 -1.4438 26 1 2.9641 0.9131 -1.9815 27 1 1.2915 2.2804 -3.0009 28 1 4.0910 -0.2613 -0.0106 29 1 5.3231 -2.3712 0.0010 30 1 6.8964 -3.9578 1.6342 31 1 1.5892 -4.5269 0.0016 32 1 0.3780 -2.4048 0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261162458.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:25 Heat of formation + Delta-G solvation = -39.603472 kcal Electronic energy + Delta-G solvation = -14771.501160 eV Core-core repulsion = 12310.149053 eV Total energy + Delta-G solvation = -2461.352107 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09086 -38.09629 -36.61152 -34.85292 -31.86446 -31.19775 -29.95272 -27.58407 -25.59055 -23.45788 -22.46822 -21.13728 -19.18508 -18.53864 -17.47459 -16.96560 -16.50757 -15.72466 -15.64887 -14.92727 -14.74842 -14.27470 -14.02652 -13.91212 -13.64677 -13.08557 -12.89056 -12.82832 -12.60560 -12.47017 -12.28072 -12.10065 -11.55005 -11.11815 -11.01822 -10.86159 -10.10141 -9.39842 -8.54095 -8.06259 -5.99523 1.09952 1.18830 1.40547 1.53143 1.58911 2.27869 2.62397 2.83885 3.48210 3.84811 4.21936 4.28355 4.35981 4.41316 4.55336 4.59217 4.78157 4.84939 4.96189 5.01802 5.06282 5.20121 5.29643 5.44177 5.72908 5.78281 5.90966 6.18720 6.41015 6.70066 6.83119 6.90873 6.96165 7.08653 7.26209 8.48628 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049401 B = 0.006677 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.655922 B = 4192.416613 C = 4470.211086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.638 5.638 3 C 0.126 3.874 4 C 0.061 3.939 5 O -0.583 6.583 6 C 0.110 3.890 7 C -0.173 4.173 8 C -0.141 4.141 9 C 0.034 3.966 10 C -0.506 4.506 11 H 0.066 0.934 12 C 0.032 3.968 13 N -0.841 5.841 14 Si 0.977 3.023 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.262 1.262 18 C -0.197 4.197 19 C -0.169 4.169 20 H 0.035 0.965 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.028 0.972 27 H 0.390 0.610 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.282 0.718 31 H 0.095 0.905 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 9.449 -3.624 10.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.353 5.353 3 C 0.002 3.998 4 C -0.018 4.018 5 O -0.390 6.390 6 C 0.012 3.988 7 C -0.195 4.195 8 C -0.161 4.161 9 C 0.031 3.969 10 C -0.537 4.537 11 H 0.085 0.915 12 C -0.180 4.180 13 N -0.469 5.469 14 Si 0.799 3.201 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.186 1.186 18 C -0.217 4.217 19 C -0.191 4.191 20 H 0.054 0.946 21 H 0.073 0.927 22 H 0.090 0.910 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.239 0.761 28 H 0.129 0.871 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.376 9.475 -2.885 10.828 hybrid contribution 0.863 -0.636 -0.609 1.232 sum -3.513 8.840 -3.494 10.134 Atomic orbital electron populations 1.21393 0.79703 1.01611 1.00225 1.45786 1.04646 1.01931 1.82985 1.21457 0.97875 0.85370 0.95127 1.22707 0.85831 0.98779 0.94519 1.86443 1.31030 1.90297 1.31225 1.17537 0.90739 0.85986 1.04576 1.20304 0.92349 0.97458 1.09397 1.20876 0.99018 0.92000 1.04251 1.17841 0.91869 0.93854 0.93320 1.19586 0.99489 0.95856 1.38787 0.91544 1.26607 0.99301 0.99945 0.92098 1.69919 1.18130 1.34498 1.24373 0.85280 0.77755 0.78286 0.78773 1.18919 1.19481 1.18576 1.20750 0.94047 0.96514 1.10406 1.20201 0.98403 0.91387 1.09137 0.94642 0.92707 0.91038 0.90060 0.89597 0.90886 0.95364 0.76137 0.87074 0.88072 0.90720 0.88689 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.42 9.81 127.77 1.25 4.68 16 2 N -0.64 -22.60 2.95 -721.72 -2.13 -24.72 16 3 C 0.13 3.61 5.58 86.38 0.48 4.09 16 4 C 0.06 1.54 7.39 71.98 0.53 2.07 16 5 O -0.58 -14.25 13.22 -148.98 -1.97 -16.22 16 6 C 0.11 4.83 6.57 38.67 0.25 5.09 16 7 C -0.17 -8.15 9.13 22.15 0.20 -7.95 16 8 C -0.14 -7.69 8.64 22.48 0.19 -7.49 16 9 C 0.03 1.93 5.57 -21.27 -0.12 1.81 16 10 C -0.51 -28.83 9.03 23.38 0.21 -28.61 16 11 H 0.07 3.69 7.91 -2.91 -0.02 3.67 16 12 C 0.03 1.72 5.13 85.23 0.44 2.16 16 13 N -0.84 -46.09 10.96 21.82 0.24 -45.85 16 14 Si 0.98 40.37 29.60 68.60 2.03 42.40 16 15 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 16 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 18 C -0.20 -10.17 9.74 22.47 0.22 -9.96 16 19 C -0.17 -7.78 9.13 22.15 0.20 -7.58 16 20 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 21 H 0.05 1.65 6.16 -2.39 -0.01 1.64 16 22 H 0.07 1.80 7.89 -2.38 -0.02 1.78 16 23 H 0.08 2.38 6.17 -2.39 -0.01 2.36 16 24 H 0.09 2.12 7.89 -2.39 -0.02 2.10 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.39 6.03 9.12 -74.05 -0.68 5.35 16 28 H 0.11 4.59 6.11 -2.91 -0.02 4.57 16 29 H 0.10 5.75 6.16 -2.91 -0.02 5.73 16 30 H 0.28 14.04 8.30 -92.70 -0.77 13.28 16 31 H 0.09 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.12 4.63 6.10 -2.91 -0.02 4.61 16 Total: -1.00 -65.17 268.06 2.49 -62.68 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.45 Total: 23.40 kcal Atomic # 6 Polarization: -45.56 SS G_CDS: 3.87 Total: -41.69 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -1.89 Total: -70.57 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -1.97 Total: -16.22 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -65.17 2.49 -62.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261162458.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.077 kcal (2) G-P(sol) polarization free energy of solvation -65.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds