Wall clock time and date at job start Mon Mar 30 2020 02:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.46976 * 2 1 4 4 C 1.46900 * 111.00076 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46988 * 34.99974 * 4 3 2 6 6 C 1.50699 * 109.47334 * 275.00475 * 4 3 2 7 7 H 1.08003 * 119.99742 * 294.97497 * 6 4 3 8 8 C 1.37871 * 120.00369 * 114.98215 * 6 4 3 9 9 N 1.31514 * 120.00250 * 184.82975 * 8 6 4 10 10 Si 1.86800 * 120.00104 * 4.82797 * 8 6 4 11 11 H 1.48494 * 109.47393 * 84.69570 * 10 8 6 12 12 H 1.48496 * 109.47328 * 204.69755 * 10 8 6 13 13 H 1.48501 * 109.47064 * 324.69639 * 10 8 6 14 14 C 1.50702 * 109.46937 * 154.99879 * 4 3 2 15 15 C 1.38257 * 119.94262 * 44.83297 * 14 4 3 16 16 C 1.38156 * 120.05316 * 179.72319 * 15 14 4 17 17 C 1.38724 * 119.94177 * 0.52354 * 16 15 14 18 18 O 1.35898 * 120.05825 * 179.72792 * 17 16 15 19 19 C 1.38736 * 119.89111 * 359.75075 * 17 16 15 20 20 C 1.38143 * 119.94369 * 359.97438 * 19 17 16 21 21 H 1.09001 * 109.47398 * 300.00022 * 1 2 3 22 22 H 1.09002 * 109.47278 * 60.00262 * 1 2 3 23 23 H 1.09000 * 109.47086 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46810 * 119.99992 * 2 1 3 25 25 H 1.09001 * 109.47398 * 239.99978 * 2 1 3 26 26 H 1.00896 * 111.00006 * 303.95374 * 3 2 1 27 27 H 0.96998 * 120.00372 * 179.97438 * 9 8 6 28 28 H 1.07999 * 119.97804 * 359.97354 * 15 14 4 29 29 H 1.08002 * 120.02465 * 180.29509 * 16 15 14 30 30 H 0.96708 * 114.00044 * 270.02258 * 18 17 16 31 31 H 1.07998 * 120.03151 * 179.97438 * 19 17 16 32 32 H 1.08002 * 119.97185 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8740 0.5923 -0.5886 6 6 3.9930 1.3140 1.4162 7 1 3.7794 2.0974 2.1283 8 6 4.7277 0.2131 1.8023 9 7 5.0873 0.0703 3.0593 10 14 5.2126 -1.0758 0.5401 11 1 6.4603 -0.6529 -0.1450 12 1 5.4383 -2.3757 1.2216 13 1 4.1246 -1.2233 -0.4597 14 6 3.9560 2.7248 -0.5999 15 6 3.3529 3.9125 -0.2295 16 6 3.7839 5.1067 -0.7742 17 6 4.8155 5.1123 -1.7018 18 8 5.2376 6.2851 -2.2433 19 6 5.4152 3.9186 -2.0761 20 6 4.9844 2.7277 -1.5242 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.6441 1.9012 -0.7813 27 1 5.6039 -0.7043 3.3310 28 1 2.5469 3.9072 0.4894 29 1 3.3156 6.0347 -0.4810 30 1 4.7722 6.5343 -3.0536 31 1 6.2182 3.9203 -2.7983 32 1 5.4507 1.7981 -1.8155 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261167678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:08 Heat of formation + Delta-G solvation = -20.879639 kcal Electronic energy + Delta-G solvation = -14863.198057 eV Core-core repulsion = 12402.657877 eV Total energy + Delta-G solvation = -2460.540180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.27802 -37.03665 -35.25888 -32.59825 -31.00348 -30.44067 -28.07212 -26.20036 -22.79005 -22.33831 -21.15032 -19.96434 -18.00224 -17.04175 -15.73513 -15.16444 -14.91604 -14.47371 -14.36563 -13.66025 -13.48785 -12.86724 -12.85547 -12.42776 -12.06206 -11.82325 -11.52145 -11.26252 -11.00843 -10.84550 -10.53827 -10.16244 -10.00234 -9.79548 -9.53032 -8.70271 -8.43574 -7.82861 -7.30306 -6.16438 -4.14139 1.81662 1.91441 3.18301 3.24440 3.28109 4.18993 4.30182 4.60232 4.97433 5.26052 5.43270 5.46057 5.67954 5.82825 5.90582 6.00828 6.07085 6.16435 6.30070 6.37258 6.41051 6.59982 6.70055 6.75112 6.91078 6.97093 7.31965 7.35571 7.52140 7.98248 7.99655 8.31115 8.61480 8.95934 9.45000 10.96288 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.010014 C = 0.008258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.522169 B = 2795.475534 C = 3389.904781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.060 3.940 3 N -0.678 5.678 4 C 0.209 3.791 5 H 0.022 0.978 6 C -0.479 4.479 7 H 0.080 0.920 8 C 0.073 3.927 9 N -0.890 5.890 10 Si 0.867 3.133 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.264 1.264 14 C -0.048 4.048 15 C -0.087 4.087 16 C -0.146 4.146 17 C 0.071 3.929 18 O -0.503 6.503 19 C -0.145 4.145 20 C -0.115 4.115 21 H 0.061 0.939 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.011 0.989 26 H 0.310 0.690 27 H 0.265 0.735 28 H 0.132 0.868 29 H 0.119 0.881 30 H 0.378 0.622 31 H 0.118 0.882 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 4.250 -10.889 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.070 4.070 3 N -0.309 5.309 4 C 0.102 3.898 5 H 0.040 0.960 6 C -0.517 4.517 7 H 0.098 0.902 8 C -0.130 4.130 9 N -0.527 5.527 10 Si 0.695 3.305 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.189 1.189 14 C -0.049 4.049 15 C -0.106 4.106 16 C -0.165 4.165 17 C 0.027 3.973 18 O -0.312 6.312 19 C -0.163 4.163 20 C -0.134 4.134 21 H 0.080 0.920 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.029 0.971 26 H 0.127 0.873 27 H 0.076 0.924 28 H 0.150 0.850 29 H 0.137 0.863 30 H 0.232 0.768 31 H 0.136 0.864 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.979 4.178 -9.570 11.174 hybrid contribution 0.408 -1.011 -1.816 2.118 sum -3.570 3.167 -11.386 12.346 Atomic orbital electron populations 1.21768 0.96321 1.00574 1.01645 1.21795 0.93981 0.91074 1.00107 1.61059 1.10185 1.12298 1.47341 1.18816 0.84894 0.89322 0.96768 0.96000 1.20812 1.31285 1.06490 0.93143 0.90170 1.25094 0.95560 0.97408 0.94956 1.69883 1.37784 1.29587 1.15456 0.87045 0.79468 0.81741 0.82245 1.20005 1.21257 1.18930 1.20555 0.94711 0.97303 0.92356 1.20937 1.00040 0.90785 0.98814 1.21361 0.97284 0.98563 0.99294 1.18349 0.96407 0.84639 0.97941 1.84849 1.63908 1.37930 1.44508 1.21221 1.01092 0.92005 1.02016 1.20898 0.97710 0.97225 0.97566 0.91959 0.93722 0.93218 0.90470 0.97087 0.87340 0.92450 0.85010 0.86320 0.76787 0.86446 0.86656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.17 37.16 0.38 -1.84 16 2 C 0.06 1.15 6.20 -3.83 -0.02 1.13 16 3 N -0.68 -13.82 5.81 -109.19 -0.63 -14.45 16 4 C 0.21 4.76 2.18 -70.02 -0.15 4.61 16 5 H 0.02 0.52 3.97 -51.93 -0.21 0.31 16 6 C -0.48 -13.10 8.87 -34.44 -0.31 -13.41 16 7 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 10 Si 0.87 20.84 27.25 -169.99 -4.63 16.21 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.26 -6.01 6.31 56.52 0.36 -5.65 16 14 C -0.05 -0.99 4.66 -104.60 -0.49 -1.48 16 15 C -0.09 -1.66 9.06 -39.60 -0.36 -2.02 16 16 C -0.15 -2.49 9.99 -39.43 -0.39 -2.88 16 17 C 0.07 1.18 6.70 -39.22 -0.26 0.91 16 18 O -0.50 -7.22 13.50 -19.42 -0.26 -7.49 16 19 C -0.14 -2.47 9.99 -39.43 -0.39 -2.86 16 20 C -0.12 -2.20 9.66 -39.60 -0.38 -2.58 16 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 1.69 8.00 -51.93 -0.42 1.27 16 25 H 0.01 0.21 7.98 -51.93 -0.41 -0.20 16 26 H 0.31 5.60 8.12 -39.29 -0.32 5.28 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.13 2.50 7.87 -52.49 -0.41 2.09 16 29 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.38 3.38 9.06 45.56 0.41 3.79 16 31 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.12 2.12 8.00 -52.49 -0.42 1.70 16 LS Contribution 273.88 15.07 4.13 4.13 Total: -1.00 -30.59 273.88 -6.60 -37.19 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.49 Total: 8.78 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.48 Total: -18.48 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.14 Total: -40.35 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.26 Total: -7.49 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.63 Total: 16.21 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.59 -6.60 -37.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.311 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds