Wall clock time and date at job start Mon Mar 30 2020 03:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32331 * 120.45038 * 2 1 4 4 C 1.31791 * 120.82154 * 180.28173 * 3 2 1 5 5 N 1.31795 * 121.75411 * 359.71602 * 4 3 2 6 6 C 1.32338 * 120.81811 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.44876 * 180.02562 * 6 5 4 8 8 C 1.38596 * 120.44530 * 179.71793 * 2 1 3 9 9 C 1.50699 * 120.80488 * 359.97438 * 8 2 1 10 10 N 1.46498 * 109.47059 * 275.87095 * 9 8 2 11 11 C 1.46504 * 120.00215 * 96.48703 * 10 9 8 12 12 C 1.36937 * 119.99906 * 276.49031 * 10 9 8 13 13 H 1.08001 * 120.00319 * 24.94549 * 12 10 9 14 14 C 1.38815 * 119.99782 * 204.94088 * 12 10 9 15 15 N 1.31616 * 120.00072 * 12.08341 * 14 12 10 16 16 Si 1.86799 * 119.99862 * 192.07648 * 14 12 10 17 17 H 1.48498 * 109.46912 * 90.00656 * 16 14 12 18 18 H 1.48502 * 109.47170 * 210.00300 * 16 14 12 19 19 H 1.48501 * 109.47480 * 330.00263 * 16 14 12 20 20 H 1.08994 * 109.47705 * 270.27895 * 1 2 3 21 21 H 1.09004 * 109.47136 * 30.28584 * 1 2 3 22 22 H 1.09009 * 109.47012 * 150.28190 * 1 2 3 23 23 H 1.08003 * 119.12546 * 179.68589 * 4 3 2 24 24 H 1.08999 * 109.47140 * 274.97902 * 7 6 5 25 25 H 1.09004 * 109.47336 * 34.97598 * 7 6 5 26 26 H 1.08996 * 109.47060 * 154.97677 * 7 6 5 27 27 H 1.09001 * 109.47532 * 155.87062 * 9 8 2 28 28 H 1.09002 * 109.46805 * 35.86719 * 9 8 2 29 29 H 1.09000 * 109.46752 * 95.25254 * 11 10 9 30 30 H 1.08993 * 109.47402 * 215.25470 * 11 10 9 31 31 H 1.08998 * 109.47050 * 335.26262 * 11 10 9 32 32 H 0.97004 * 119.99895 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1776 1.1408 0.0000 4 6 3.4955 1.1493 -0.0056 5 7 4.1963 0.0332 -0.0058 6 6 3.5944 -1.1454 0.0002 7 6 4.4040 -2.4164 0.0005 8 6 2.2092 -1.1948 0.0059 9 6 1.4844 -2.5160 0.0130 10 7 1.1262 -2.8691 1.3889 11 6 -0.2131 -2.5643 1.8984 12 6 2.0433 -3.4841 2.1988 13 1 3.0995 -3.3581 2.0117 14 6 1.6154 -4.2693 3.2605 15 7 0.3499 -4.6190 3.3523 16 14 2.8358 -4.8299 4.5589 17 1 2.8944 -3.8243 5.6500 18 1 2.4027 -6.1375 5.1137 19 1 4.1804 -4.9735 3.9453 20 1 -0.3634 0.0050 1.0276 21 1 -0.3633 0.8874 -0.5183 22 1 -0.3633 -0.8926 -0.5095 23 1 4.0150 2.0962 -0.0106 24 1 4.6701 -2.6779 -1.0237 25 1 5.3119 -2.2688 0.5854 26 1 3.8156 -3.2218 0.4400 27 1 2.1317 -3.2879 -0.4034 28 1 0.5793 -2.4371 -0.5892 29 1 -0.8521 -3.4403 1.7874 30 1 -0.1480 -2.2932 2.9521 31 1 -0.6357 -1.7326 1.3346 32 1 0.0509 -5.1681 4.0940 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261170410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:16 Heat of formation + Delta-G solvation = 49.022061 kcal Electronic energy + Delta-G solvation = -15380.691745 eV Core-core repulsion = 12955.475481 eV Total energy + Delta-G solvation = -2425.216264 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.04543 -37.80205 -35.71033 -34.71199 -32.57963 -30.46682 -29.32575 -27.71113 -27.21315 -24.48240 -22.53375 -22.28038 -19.05665 -18.29882 -17.29076 -16.99678 -16.15121 -15.78667 -15.32684 -14.96475 -14.37934 -14.21841 -14.16378 -13.77813 -13.57345 -13.40516 -13.22170 -13.00682 -12.79078 -12.44207 -12.12480 -11.91917 -11.72386 -11.56467 -11.07805 -10.65069 -10.10273 -10.05328 -8.74838 -7.80474 -5.32210 0.08432 0.15958 1.44234 1.46930 1.53759 2.49644 2.83682 3.21703 3.25624 3.32787 3.62827 3.85378 3.99997 4.09002 4.49832 4.54700 4.60869 4.69593 4.74457 4.78787 4.83388 4.99041 5.10620 5.16774 5.24217 5.36934 5.63910 5.73061 5.77238 6.15847 6.34590 7.16710 7.21931 7.86648 8.30641 9.20803 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030356 B = 0.010378 C = 0.008682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.152530 B = 2697.399852 C = 3224.304824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.167 3.833 3 N -0.544 5.544 4 C 0.275 3.725 5 N -0.545 5.545 6 C 0.170 3.830 7 C -0.112 4.112 8 C -0.198 4.198 9 C 0.190 3.810 10 N -0.604 5.604 11 C 0.164 3.836 12 C -0.260 4.260 13 H 0.079 0.921 14 C -0.048 4.048 15 N -0.933 5.933 16 Si 0.955 3.045 17 H -0.295 1.295 18 H -0.294 1.294 19 H -0.264 1.264 20 H 0.081 0.919 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.221 0.779 24 H 0.101 0.899 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.010 0.990 30 H 0.003 0.997 31 H 0.050 0.950 32 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 7.028 -8.125 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.022 3.978 3 N -0.259 5.259 4 C -0.013 4.013 5 N -0.261 5.261 6 C 0.024 3.976 7 C -0.169 4.169 8 C -0.205 4.205 9 C 0.063 3.937 10 N -0.326 5.326 11 C 0.019 3.981 12 C -0.390 4.390 13 H 0.096 0.904 14 C -0.243 4.243 15 N -0.580 5.580 16 Si 0.784 3.216 17 H -0.223 1.223 18 H -0.221 1.221 19 H -0.188 1.188 20 H 0.100 0.900 21 H 0.111 0.889 22 H 0.110 0.890 23 H 0.237 0.763 24 H 0.119 0.881 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.028 0.972 30 H 0.022 0.978 31 H 0.068 0.932 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.171 7.755 -8.005 11.587 hybrid contribution 0.103 -1.075 1.217 1.627 sum 3.273 6.680 -6.788 10.070 Atomic orbital electron populations 1.20951 0.86775 1.04553 1.03621 1.21917 0.98589 0.87662 0.89663 1.68233 1.10826 1.30545 1.16328 1.25378 0.86970 0.97508 0.91437 1.68235 1.42387 0.99162 1.16331 1.21896 0.91692 0.94564 0.89437 1.20980 0.99569 0.92090 1.04218 1.22523 0.95845 1.00063 1.02044 1.19764 0.97708 0.89861 0.86362 1.44039 1.11798 1.67809 1.08925 1.20850 0.85453 0.96253 0.95526 1.19612 0.89490 1.21706 1.08192 0.90364 1.25716 0.97566 0.98699 1.02332 1.70200 1.15701 1.40135 1.31942 0.85449 0.79619 0.76795 0.79768 1.22281 1.22097 1.18826 0.90021 0.88938 0.88995 0.76257 0.88096 0.90355 0.89589 0.91768 0.90524 0.97188 0.97804 0.93226 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.83 8.44 71.23 0.60 -2.23 16 2 C 0.17 5.69 6.82 42.57 0.29 5.98 16 3 N -0.54 -18.20 10.38 -188.08 -1.95 -20.15 16 4 C 0.28 8.58 12.29 180.88 2.22 10.81 16 5 N -0.55 -18.77 10.38 -188.07 -1.95 -20.72 16 6 C 0.17 6.02 6.82 42.57 0.29 6.31 16 7 C -0.11 -3.48 9.38 71.23 0.67 -2.81 16 8 C -0.20 -7.14 5.45 -19.69 -0.11 -7.25 16 9 C 0.19 7.12 4.94 85.63 0.42 7.54 16 10 N -0.60 -28.30 2.92 -731.31 -2.13 -30.43 16 11 C 0.16 7.61 8.93 127.77 1.14 8.75 16 12 C -0.26 -13.51 9.30 84.03 0.78 -12.73 16 13 H 0.08 3.91 5.52 -2.91 -0.02 3.90 16 14 C -0.05 -2.60 5.12 84.86 0.43 -2.16 16 15 N -0.93 -53.84 10.78 21.65 0.23 -53.61 16 16 Si 0.95 44.44 29.57 68.60 2.03 46.47 16 17 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 18 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 20 H 0.08 2.40 6.79 -2.39 -0.02 2.39 16 21 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 22 H 0.09 2.34 5.73 -2.38 -0.01 2.33 16 23 H 0.22 4.96 8.06 -2.91 -0.02 4.93 16 24 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 26 H 0.09 3.02 3.95 -2.39 -0.01 3.01 16 27 H 0.06 2.35 6.34 -2.39 -0.02 2.33 16 28 H 0.08 2.52 6.22 -2.39 -0.01 2.51 16 29 H 0.01 0.50 7.29 -2.39 -0.02 0.49 16 30 H 0.00 0.16 7.45 -2.39 -0.02 0.15 16 31 H 0.05 1.86 4.24 -2.39 -0.01 1.85 16 32 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -63.44 257.14 4.11 -59.33 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.14 Total: 6.92 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 6.75 Total: 12.20 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -5.80 Total: -124.92 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -63.44 4.11 -59.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.353 kcal (2) G-P(sol) polarization free energy of solvation -63.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds