Wall clock time and date at job start Mon Mar 30 2020 03:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30761 * 1 3 3 Si 1.86794 * 120.00235 * 2 1 4 4 H 1.48497 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47238 * 299.99918 * 3 2 1 6 6 H 1.48500 * 109.47251 * 59.99631 * 3 2 1 7 7 C 1.40174 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99597 * 180.02562 * 7 2 1 9 9 C 1.40232 * 119.99882 * 0.02562 * 7 2 1 10 10 C 1.39797 * 126.66315 * 359.97438 * 9 7 2 11 11 C 1.38698 * 107.53901 * 180.02562 * 10 9 7 12 12 N 1.31236 * 109.07921 * 359.97438 * 11 10 9 13 13 N 1.37462 * 126.65835 * 179.97438 * 9 7 2 14 14 C 1.46506 * 126.20139 * 0.25543 * 13 9 7 15 15 H 1.08997 * 110.01590 * 358.32689 * 14 13 9 16 16 C 1.54266 * 110.03095 * 236.88296 * 14 13 9 17 17 C 1.54894 * 104.19373 * 217.10731 * 16 14 13 18 18 C 1.54891 * 102.74951 * 37.94184 * 17 16 14 19 19 C 1.53879 * 110.02715 * 119.71822 * 14 13 9 20 20 H 1.08996 * 110.03462 * 359.94822 * 19 14 13 21 21 N 1.46902 * 110.02940 * 238.56980 * 19 14 13 22 22 H 0.96993 * 120.00034 * 0.02562 * 1 2 3 23 23 H 1.08008 * 126.23549 * 0.03669 * 10 9 7 24 24 H 1.08001 * 125.46399 * 180.02562 * 11 10 9 25 25 H 1.08995 * 110.48916 * 335.78487 * 16 14 13 26 26 H 1.08998 * 110.48743 * 98.43342 * 16 14 13 27 27 H 1.08999 * 110.75809 * 279.63247 * 17 16 14 28 28 H 1.08998 * 110.91686 * 156.33223 * 17 16 14 29 29 H 1.08997 * 110.48770 * 203.37845 * 18 17 16 30 30 H 1.09005 * 110.59520 * 80.78812 * 18 17 16 31 31 H 1.00902 * 111.00025 * 180.02562 * 21 19 14 32 32 H 1.00895 * 110.99993 * 303.95444 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 3.7016 1.3463 0.0006 5 1 1.8830 2.3964 -1.2125 6 1 1.8829 2.3964 1.2124 7 6 2.0085 -1.2140 0.0005 8 1 3.0884 -1.2139 0.0010 9 6 1.3072 -2.4284 0.0005 10 6 -0.0813 -2.5905 0.0005 11 6 -0.3430 -3.9526 0.0011 12 7 0.7940 -4.6079 0.0009 13 7 1.8518 -3.6905 0.0005 14 6 3.2801 -4.0167 0.0058 15 1 3.8718 -3.1016 -0.0201 16 6 3.6240 -4.9041 -1.2083 17 6 4.6831 -5.8958 -0.6660 18 6 4.1732 -6.1910 0.7665 19 6 3.6292 -4.8349 1.2614 20 1 2.7362 -4.9885 1.8672 21 7 4.6559 -4.1374 2.0471 22 1 -0.4850 0.8400 -0.0004 23 1 -0.8165 -1.7993 0.0000 24 1 -1.3251 -4.4019 0.0009 25 1 2.7394 -5.4406 -1.5514 26 1 4.0428 -4.3020 -2.0145 27 1 5.6685 -5.4309 -0.6370 28 1 4.7049 -6.8071 -1.2637 29 1 4.9927 -6.5279 1.4013 30 1 3.3777 -6.9359 0.7445 31 1 4.8964 -4.6621 2.8748 32 1 5.4743 -3.9502 1.4876 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261171177.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:40 Heat of formation + Delta-G solvation = 36.552914 kcal Electronic energy + Delta-G solvation = -15276.949760 eV Core-core repulsion = 12851.192794 eV Total energy + Delta-G solvation = -2425.756967 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.05609 -39.10331 -35.55254 -33.52280 -32.60732 -30.64201 -28.32173 -27.15236 -26.93794 -22.40961 -21.66132 -21.44234 -20.00526 -19.00955 -17.60675 -16.65783 -16.41463 -15.86707 -15.60262 -14.97499 -14.52949 -14.32747 -14.04066 -13.80439 -13.44171 -12.95970 -12.90965 -12.69953 -12.36303 -12.11549 -12.05588 -11.81994 -11.68952 -11.62063 -11.28904 -10.62108 -9.75240 -9.54442 -8.72254 -8.50274 -6.45284 1.26749 1.41174 1.57655 1.79227 2.17358 2.40470 2.58079 3.34742 3.42658 3.63381 3.86768 4.01287 4.24088 4.32878 4.46375 4.59489 4.66602 4.71791 4.90931 5.00028 5.07044 5.14075 5.18242 5.33125 5.46924 5.59697 5.96648 6.11117 6.24282 6.53308 6.64992 6.77254 6.88435 7.29537 7.71395 8.41603 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029768 B = 0.009857 C = 0.008267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.368717 B = 2840.016721 C = 3386.309183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.031 3.969 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.473 4.473 8 H 0.078 0.922 9 C 0.226 3.774 10 C -0.397 4.397 11 C 0.029 3.971 12 N -0.397 5.397 13 N -0.421 5.421 14 C 0.174 3.826 15 H 0.087 0.913 16 C -0.131 4.131 17 C -0.106 4.106 18 C -0.143 4.143 19 C 0.090 3.910 20 H 0.049 0.951 21 N -0.845 5.845 22 H 0.286 0.714 23 H 0.142 0.858 24 H 0.173 0.827 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.352 0.648 32 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 -4.776 0.259 11.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.185 4.185 3 Si 0.820 3.180 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.509 4.509 8 H 0.096 0.904 9 C 0.106 3.894 10 C -0.428 4.428 11 C -0.152 4.152 12 N -0.220 5.220 13 N -0.210 5.210 14 C 0.070 3.930 15 H 0.105 0.895 16 C -0.169 4.169 17 C -0.144 4.144 18 C -0.183 4.183 19 C -0.023 4.023 20 H 0.067 0.933 21 N -0.377 5.377 22 H 0.097 0.903 23 H 0.159 0.841 24 H 0.190 0.810 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.167 0.833 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.069 -5.288 0.347 11.378 hybrid contribution -0.222 0.687 -0.142 0.736 sum 9.847 -4.601 0.204 10.871 Atomic orbital electron populations 1.69827 1.08978 1.29829 1.35765 1.26808 0.95762 1.04463 0.91443 0.84883 0.79025 0.75167 0.78892 1.17866 1.18814 1.19026 1.18955 0.94392 0.89424 1.48168 0.90404 1.19185 0.92752 0.85307 0.92181 1.22191 0.95527 0.95368 1.29723 1.23516 0.96937 0.94138 1.00635 1.76667 0.94077 1.16910 1.34299 1.48786 1.04369 1.03017 1.64809 1.21679 0.77256 0.98617 0.95460 0.89477 1.22707 0.99668 0.97861 0.96689 1.22409 0.97784 0.98883 0.95322 1.23056 1.00796 0.96623 0.97819 1.22142 0.94798 0.92053 0.93322 0.93289 1.58725 1.15108 1.52788 1.11048 0.90311 0.84055 0.81047 0.92697 0.91019 0.89238 0.89693 0.89065 0.92246 0.83341 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.99 10.30 21.87 0.23 -43.76 16 2 C 0.03 1.62 5.50 85.32 0.47 2.09 16 3 Si 1.00 38.74 29.56 68.60 2.03 40.77 16 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 6 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.47 -26.27 9.05 23.23 0.21 -26.06 16 8 H 0.08 4.10 6.77 -2.91 -0.02 4.08 16 9 C 0.23 13.10 6.75 39.12 0.26 13.36 16 10 C -0.40 -23.22 9.76 22.76 0.22 -23.00 16 11 C 0.03 1.52 11.93 84.89 1.01 2.53 16 12 N -0.40 -20.88 12.01 -57.58 -0.69 -21.58 16 13 N -0.42 -21.86 3.28 -315.48 -1.03 -22.89 16 14 C 0.17 7.12 3.46 45.72 0.16 7.28 16 15 H 0.09 3.70 6.53 -2.39 -0.02 3.68 16 16 C -0.13 -4.48 6.51 31.67 0.21 -4.27 16 17 C -0.11 -2.57 6.91 31.89 0.22 -2.35 16 18 C -0.14 -3.78 6.52 31.67 0.21 -3.57 16 19 C 0.09 3.12 3.79 45.64 0.17 3.30 16 20 H 0.05 2.12 7.86 -2.39 -0.02 2.10 16 21 N -0.84 -24.51 9.11 -165.67 -1.51 -26.02 16 22 H 0.29 13.76 8.29 -92.71 -0.77 13.00 16 23 H 0.14 8.57 5.73 -2.91 -0.02 8.56 16 24 H 0.17 7.66 8.06 -2.91 -0.02 7.63 16 25 H 0.05 2.17 7.70 -2.39 -0.02 2.15 16 26 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 1.84 8.03 -2.39 -0.02 1.82 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.35 8.27 9.06 -89.69 -0.81 7.46 16 32 H 0.35 8.40 8.97 -89.70 -0.80 7.60 16 Total: -1.00 -67.28 265.34 1.69 -65.59 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: -0.47 Total: 38.58 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 3.14 Total: -30.69 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -3.01 Total: -114.25 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -67.28 1.69 -65.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171177.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.145 kcal (2) G-P(sol) polarization free energy of solvation -67.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds