Wall clock time and date at job start Mon Mar 30 2020 03:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86802 * 119.99864 * 2 1 4 4 H 1.48504 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47058 * 59.99726 * 3 2 1 6 6 H 1.48499 * 109.47078 * 299.99750 * 3 2 1 7 7 C 1.40164 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99947 * 152.17392 * 7 2 1 9 9 C 1.40240 * 120.00264 * 332.18231 * 7 2 1 10 10 C 1.39807 * 126.65398 * 343.52876 * 9 7 2 11 11 C 1.38710 * 107.53173 * 179.90116 * 10 9 7 12 12 N 1.31237 * 109.07745 * 0.37420 * 11 10 9 13 13 N 1.37456 * 126.66381 * 163.84503 * 9 7 2 14 14 C 1.46504 * 126.20258 * 359.97438 * 13 9 7 15 15 H 1.09001 * 110.01476 * 0.69762 * 14 13 9 16 16 C 1.54262 * 110.03283 * 122.09324 * 14 13 9 17 17 C 1.55011 * 104.13615 * 95.68462 * 16 14 13 18 18 C 1.54892 * 102.75573 * 37.95500 * 17 16 14 19 19 C 1.53873 * 110.03109 * 239.31133 * 14 13 9 20 20 H 1.08998 * 110.03348 * 0.04474 * 19 14 13 21 21 N 1.46901 * 110.03313 * 121.42896 * 19 14 13 22 22 H 0.97002 * 120.00012 * 174.31988 * 1 2 3 23 23 H 1.07994 * 126.23842 * 0.03391 * 10 9 7 24 24 H 1.07997 * 125.45749 * 180.13849 * 11 10 9 25 25 H 1.09004 * 110.48719 * 214.35382 * 16 14 13 26 26 H 1.09003 * 110.48396 * 336.99296 * 16 14 13 27 27 H 1.08996 * 110.76469 * 279.62867 * 17 16 14 28 28 H 1.09011 * 110.89727 * 156.33729 * 17 16 14 29 29 H 1.08995 * 110.48331 * 203.36866 * 18 17 16 30 30 H 1.09000 * 110.59830 * 80.77741 * 18 17 16 31 31 H 1.00898 * 110.99972 * 179.97438 * 21 19 14 32 32 H 1.00895 * 111.00401 * 303.95409 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7016 1.3464 0.0006 5 1 1.8827 2.3965 1.2124 6 1 1.8828 2.3964 -1.2125 7 6 2.0084 -1.2138 0.0005 8 1 2.9947 -1.2681 -0.4360 9 6 1.4288 -2.3580 0.5678 10 6 0.3348 -2.3957 1.4374 11 6 0.0952 -3.7256 1.7502 12 7 0.9764 -4.4769 1.1326 13 7 1.8299 -3.6595 0.3816 14 6 2.9479 -4.1097 -0.4513 15 1 3.4419 -3.2521 -0.9079 16 6 3.9552 -4.9073 0.4024 17 6 3.5491 -6.3871 0.1831 18 6 3.1551 -6.4153 -1.3146 19 6 2.4395 -5.0678 -1.5428 20 1 1.3609 -5.1972 -1.4533 21 7 2.7739 -4.5392 -2.8720 22 1 -0.4850 -0.8359 -0.0831 23 1 -0.2237 -1.5446 1.7980 24 1 -0.6882 -4.0849 2.4009 25 1 4.9729 -4.7347 0.0521 26 1 3.8618 -4.6371 1.4543 27 1 2.6986 -6.6516 0.8114 28 1 4.3905 -7.0535 0.3738 29 1 2.4780 -7.2456 -1.5153 30 1 4.0426 -6.4873 -1.9433 31 1 2.4472 -5.1572 -3.5996 32 1 2.4042 -3.6085 -2.9946 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261171181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:43 Heat of formation + Delta-G solvation = 47.813042 kcal Electronic energy + Delta-G solvation = -15358.021363 eV Core-core repulsion = 12932.752672 eV Total energy + Delta-G solvation = -2425.268691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40981 -37.45255 -33.85245 -32.37007 -30.96067 -28.47870 -26.94257 -25.56526 -24.89564 -20.85733 -20.19879 -19.78118 -18.44032 -17.52567 -15.71597 -14.92887 -14.84554 -14.39712 -13.96931 -13.87872 -13.21487 -12.67206 -12.55018 -12.34718 -11.50499 -11.21371 -11.12041 -10.93517 -10.72148 -10.65130 -10.45400 -10.41387 -10.30108 -9.80779 -9.30547 -8.71695 -8.44052 -7.89800 -7.26740 -7.00541 -4.51528 3.05606 3.17242 3.35757 3.59125 3.89750 4.09626 4.34310 4.80084 4.91728 5.01622 5.20041 5.43447 5.81231 5.81907 5.88110 5.95881 6.07202 6.18998 6.23655 6.38705 6.48001 6.53234 6.72562 7.11813 7.26588 7.41010 7.51055 7.65765 7.67648 8.02858 8.12091 8.44686 8.67602 9.09830 9.52201 10.09690 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031412 B = 0.009731 C = 0.008545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.160163 B = 2876.819537 C = 3276.152819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.053 3.947 3 Si 1.073 2.927 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.532 4.532 8 H 0.074 0.926 9 C 0.260 3.740 10 C -0.413 4.413 11 C 0.055 3.945 12 N -0.386 5.386 13 N -0.423 5.423 14 C 0.185 3.815 15 H 0.098 0.902 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.112 4.112 19 C 0.080 3.920 20 H 0.048 0.952 21 N -0.845 5.845 22 H 0.304 0.696 23 H 0.118 0.882 24 H 0.145 0.855 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.335 0.665 32 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 -5.110 -3.070 7.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.172 4.172 3 Si 0.897 3.103 4 H -0.202 1.202 5 H -0.199 1.199 6 H -0.205 1.205 7 C -0.567 4.567 8 H 0.092 0.908 9 C 0.141 3.859 10 C -0.444 4.444 11 C -0.127 4.127 12 N -0.208 5.208 13 N -0.211 5.211 14 C 0.081 3.919 15 H 0.116 0.884 16 C -0.163 4.163 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.032 4.032 20 H 0.066 0.934 21 N -0.375 5.375 22 H 0.118 0.882 23 H 0.136 0.864 24 H 0.162 0.838 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.960 -4.840 -3.006 8.245 hybrid contribution -1.291 -0.741 -0.013 1.488 sum 4.669 -5.581 -3.018 7.878 Atomic orbital electron populations 1.70302 1.08364 1.34800 1.28140 1.26855 0.95500 1.03651 0.91161 0.83540 0.75420 0.73333 0.78006 1.20188 1.19947 1.20474 1.19577 1.04501 0.93534 1.39127 0.90800 1.18773 0.91544 0.83734 0.91812 1.21138 1.10608 0.95834 1.16810 1.22916 0.97552 0.93421 0.98820 1.76821 1.07733 1.18670 1.17542 1.48604 1.27112 1.03754 1.41639 1.21245 0.84863 0.96984 0.88833 0.88385 1.22627 0.97850 0.95357 1.00492 1.22419 1.00891 0.96123 0.95985 1.22350 0.99981 0.95705 0.97018 1.22326 0.97979 0.94211 0.88657 0.93422 1.58913 1.67920 1.07287 1.03349 0.88235 0.86405 0.83779 0.91344 0.91233 0.90590 0.92252 0.92430 0.90953 0.85322 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.10 12.59 55.56 0.70 -20.40 16 2 C 0.05 1.35 5.22 -17.29 -0.09 1.26 16 3 Si 1.07 21.61 30.02 -169.99 -5.10 16.51 16 4 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.53 -14.01 8.83 -38.11 -0.34 -14.35 16 8 H 0.07 1.88 7.08 -52.49 -0.37 1.51 16 9 C 0.26 7.01 6.40 -84.01 -0.54 6.47 16 10 C -0.41 -11.08 8.92 -38.82 -0.35 -11.43 16 11 C 0.05 1.36 11.93 -17.63 -0.21 1.15 16 12 N -0.39 -9.60 12.32 30.45 0.38 -9.22 16 13 N -0.42 -10.36 3.23 -51.07 -0.17 -10.52 16 14 C 0.19 3.81 3.46 -66.81 -0.23 3.58 16 15 H 0.10 2.10 6.62 -51.93 -0.34 1.75 16 16 C -0.12 -2.25 6.48 -25.01 -0.16 -2.41 16 17 C -0.12 -1.87 6.91 -24.67 -0.17 -2.04 16 18 C -0.11 -1.72 6.53 -25.07 -0.16 -1.89 16 19 C 0.08 1.45 3.78 -66.59 -0.25 1.20 16 20 H 0.05 1.00 7.84 -51.93 -0.41 0.59 16 21 N -0.84 -13.21 9.11 -3.72 -0.03 -13.24 16 22 H 0.30 8.40 6.55 -40.82 -0.27 8.13 16 23 H 0.12 3.24 6.96 -52.49 -0.37 2.87 16 24 H 0.14 3.05 8.06 -52.49 -0.42 2.62 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 27 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 31 H 0.34 4.42 9.07 -39.29 -0.36 4.06 16 32 H 0.34 5.66 8.99 -39.29 -0.35 5.30 16 LS Contribution 266.86 15.07 4.02 4.02 Total: -1.00 -28.56 266.86 -6.91 -35.48 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -4.21 Total: 15.83 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -2.50 Total: -18.46 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.88 Total: -53.38 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.10 Total: 16.51 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.56 -6.91 -35.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.290 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds