Wall clock time and date at job start Mon Mar 30 2020 03:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30759 * 1 3 3 Si 1.86796 * 120.00172 * 2 1 4 4 H 1.48508 * 109.47179 * 269.99732 * 3 2 1 5 5 H 1.48505 * 109.46922 * 29.99532 * 3 2 1 6 6 H 1.48496 * 109.47434 * 149.99503 * 3 2 1 7 7 C 1.40173 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.40231 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.39810 * 126.65754 * 0.04070 * 9 7 2 11 11 C 1.38702 * 107.53031 * 179.97438 * 10 9 7 12 12 N 1.31233 * 109.08259 * 0.02562 * 11 10 9 13 13 N 1.37454 * 126.66073 * 180.02562 * 9 7 2 14 14 C 1.46504 * 126.20417 * 0.03691 * 13 9 7 15 15 H 1.08996 * 110.01383 * 0.72128 * 14 13 9 16 16 C 1.54266 * 110.03584 * 122.11547 * 14 13 9 17 17 C 1.54885 * 104.19441 * 142.89169 * 16 14 13 18 18 C 1.54882 * 102.75179 * 322.06012 * 17 16 14 19 19 C 1.53874 * 110.02931 * 239.33323 * 14 13 9 20 20 H 1.09006 * 110.03397 * 121.42872 * 19 14 13 21 21 N 1.46901 * 110.03574 * 359.97438 * 19 14 13 22 22 H 0.96994 * 119.99894 * 0.02562 * 1 2 3 23 23 H 1.07998 * 126.23407 * 359.97438 * 10 9 7 24 24 H 1.08004 * 125.45790 * 180.02562 * 11 10 9 25 25 H 1.08994 * 110.48651 * 261.57593 * 16 14 13 26 26 H 1.09006 * 110.48089 * 24.21531 * 16 14 13 27 27 H 1.09003 * 110.75519 * 80.37756 * 17 16 14 28 28 H 1.08998 * 110.75610 * 203.74052 * 17 16 14 29 29 H 1.09007 * 110.48919 * 156.62293 * 18 17 16 30 30 H 1.09000 * 110.48412 * 279.13117 * 18 17 16 31 31 H 1.00901 * 111.00141 * 180.02562 * 21 19 14 32 32 H 1.00899 * 110.99794 * 303.95304 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4892 2.0463 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4402 0.7001 7 6 2.0085 -1.2139 0.0005 8 1 3.0885 -1.2139 0.0010 9 6 1.3073 -2.4284 0.0005 10 6 -0.0814 -2.5905 -0.0008 11 6 -0.3430 -3.9526 -0.0008 12 7 0.7940 -4.6079 0.0009 13 7 1.8519 -3.6904 0.0015 14 6 3.2801 -4.0166 0.0035 15 1 3.8718 -3.1013 0.0171 16 6 3.6222 -4.8852 1.2317 17 6 4.6820 -5.8851 0.7064 18 6 4.1743 -6.2024 -0.7220 19 6 3.6314 -4.8531 -1.2393 20 1 4.3943 -4.3441 -1.8285 21 7 2.4290 -5.0736 -2.0539 22 1 -0.4850 0.8400 -0.0004 23 1 -0.8164 -1.7992 -0.0016 24 1 -1.3251 -4.4019 -0.0021 25 1 4.0396 -4.2707 2.0292 26 1 2.7369 -5.4164 1.5817 27 1 5.6675 -5.4207 0.6719 28 1 4.6998 -6.7864 1.3192 29 1 4.9949 -6.5491 -1.3503 30 1 3.3800 -6.9480 -0.6877 31 1 2.6430 -5.6217 -2.8736 32 1 1.6983 -5.5074 -1.5099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261171189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:48 Heat of formation + Delta-G solvation = 69.833405 kcal Electronic energy + Delta-G solvation = -15433.390444 eV Core-core repulsion = 13009.076628 eV Total energy + Delta-G solvation = -2424.313816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.27059 -37.31304 -33.54130 -31.99661 -30.87400 -28.65440 -26.50740 -25.63108 -24.91438 -20.63017 -20.31330 -19.53719 -18.21722 -16.83099 -15.89936 -15.43061 -14.64893 -14.17071 -13.95355 -13.23961 -12.73744 -12.45153 -12.24978 -11.88475 -11.72694 -11.52135 -11.27417 -10.93125 -10.80977 -10.67449 -10.44636 -10.40743 -10.26524 -9.66886 -9.35841 -8.57045 -7.89234 -7.60432 -6.60778 -6.53449 -4.34643 2.99169 3.10878 3.14103 3.72904 3.93195 4.23047 4.64051 4.91641 4.95852 5.16768 5.49133 5.50648 5.73059 5.77096 5.85618 5.89961 5.92418 6.11801 6.19414 6.44339 6.56130 6.59964 6.71505 7.14992 7.45649 7.61922 7.86079 8.02452 8.19677 8.35034 8.61957 8.85461 8.98202 9.36208 9.79418 10.35534 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032593 B = 0.009775 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.870418 B = 2863.669802 C = 3302.458865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.078 3.922 3 Si 0.920 3.080 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.450 4.450 8 H 0.070 0.930 9 C 0.260 3.740 10 C -0.356 4.356 11 C 0.037 3.963 12 N -0.394 5.394 13 N -0.401 5.401 14 C 0.183 3.817 15 H 0.092 0.908 16 C -0.134 4.134 17 C -0.119 4.119 18 C -0.156 4.156 19 C 0.083 3.917 20 H 0.076 0.924 21 N -0.834 5.834 22 H 0.276 0.724 23 H 0.155 0.845 24 H 0.140 0.860 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.319 0.681 32 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.687 -5.188 -0.088 8.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.141 4.141 3 Si 0.745 3.255 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.487 4.487 8 H 0.089 0.911 9 C 0.140 3.860 10 C -0.387 4.387 11 C -0.143 4.143 12 N -0.219 5.219 13 N -0.188 5.188 14 C 0.078 3.922 15 H 0.110 0.890 16 C -0.172 4.172 17 C -0.157 4.157 18 C -0.196 4.196 19 C -0.031 4.031 20 H 0.094 0.906 21 N -0.370 5.370 22 H 0.087 0.913 23 H 0.172 0.828 24 H 0.158 0.842 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.026 -5.462 -0.148 8.901 hybrid contribution 0.214 0.582 0.121 0.632 sum 7.240 -4.880 -0.027 8.731 Atomic orbital electron populations 1.69742 1.07307 1.28181 1.36328 1.25708 0.94841 1.00818 0.92752 0.86126 0.79970 0.80340 0.79056 1.19533 1.20214 1.18861 1.18560 0.93807 0.88905 1.47444 0.91139 1.18687 0.92123 0.83778 0.91419 1.22088 0.95154 0.94512 1.26991 1.23006 0.95368 0.94833 1.01089 1.76236 0.93865 1.16591 1.35182 1.48161 1.02431 1.03761 1.64482 1.21388 0.80167 0.97634 0.93056 0.89002 1.22770 0.99229 0.97613 0.97620 1.22365 0.98345 0.98917 0.96119 1.23270 1.00380 0.99091 0.96878 1.22340 0.92547 0.93873 0.94321 0.90623 1.58934 1.09360 1.57942 1.10780 0.91289 0.82767 0.84225 0.91712 0.90269 0.91626 0.91939 0.92292 0.91764 0.86980 0.81188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.81 10.30 55.56 0.57 -20.24 16 2 C 0.08 1.99 5.50 -17.28 -0.10 1.89 16 3 Si 0.92 19.04 29.56 -169.99 -5.03 14.02 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.45 -12.18 9.05 -38.11 -0.34 -12.52 16 8 H 0.07 1.80 6.77 -52.49 -0.36 1.45 16 9 C 0.26 7.21 6.75 -84.01 -0.57 6.65 16 10 C -0.36 -9.93 9.77 -38.82 -0.38 -10.31 16 11 C 0.04 0.92 11.93 -17.64 -0.21 0.71 16 12 N -0.39 -9.71 9.37 30.45 0.29 -9.43 16 13 N -0.40 -9.90 2.79 -51.07 -0.14 -10.04 16 14 C 0.18 3.73 3.72 -66.81 -0.25 3.48 16 15 H 0.09 1.89 6.76 -51.93 -0.35 1.54 16 16 C -0.13 -2.34 6.52 -25.07 -0.16 -2.50 16 17 C -0.12 -1.65 6.91 -24.74 -0.17 -1.82 16 18 C -0.16 -2.28 6.52 -25.02 -0.16 -2.44 16 19 C 0.08 1.48 4.04 -66.54 -0.27 1.21 16 20 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 21 N -0.83 -16.30 8.48 -3.67 -0.03 -16.34 16 22 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 23 H 0.16 4.45 5.73 -52.49 -0.30 4.15 16 24 H 0.14 3.04 8.06 -52.48 -0.42 2.61 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.08 1.55 7.72 -51.93 -0.40 1.15 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 30 H 0.06 0.99 8.02 -51.93 -0.42 0.57 16 31 H 0.32 5.27 9.07 -39.29 -0.36 4.91 16 32 H 0.36 7.69 6.02 -39.29 -0.24 7.45 16 LS Contribution 259.68 15.07 3.91 3.91 Total: -1.00 -29.25 259.68 -7.13 -36.38 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -4.09 Total: 17.39 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -2.61 Total: -15.66 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.68 Total: -56.04 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.25 -7.13 -36.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261171189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.213 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds