Wall clock time and date at job start Mon Mar 30 2020 03:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.45912 * 2 1 4 4 C 1.53115 * 109.46220 * 240.04291 * 2 1 3 5 5 C 1.53328 * 109.65068 * 169.98093 * 4 2 1 6 6 C 1.50591 * 108.38296 * 49.62505 * 5 4 2 7 7 N 1.32911 * 129.16734 * 163.50400 * 6 5 4 8 8 N 1.29024 * 108.63881 * 180.38546 * 7 6 5 9 9 N 1.29105 * 110.25651 * 359.96683 * 8 7 6 10 10 H 0.97005 * 126.00620 * 179.91716 * 9 8 7 11 11 C 1.34400 * 107.98747 * 359.93769 * 9 8 7 12 12 C 1.50533 * 129.25314 * 180.23997 * 11 9 8 13 13 H 1.08999 * 109.69655 * 283.24145 * 12 11 9 14 14 C 1.50696 * 109.69208 * 43.78240 * 12 11 9 15 15 H 1.07999 * 120.00098 * 54.85948 * 14 12 11 16 16 C 1.37882 * 120.00313 * 234.85465 * 14 12 11 17 17 N 1.31514 * 119.99451 * 5.09288 * 16 14 12 18 18 Si 1.86793 * 120.00229 * 185.08557 * 16 14 12 19 19 H 1.48501 * 109.47268 * 60.00355 * 18 16 14 20 20 H 1.48498 * 109.47294 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47220 * 300.00160 * 18 16 14 22 22 H 1.08994 * 109.47618 * 300.03246 * 1 2 3 23 23 H 1.09006 * 109.47104 * 60.03807 * 1 2 3 24 24 H 1.09003 * 109.47447 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47322 * 179.97438 * 3 2 1 26 26 H 1.09007 * 109.47118 * 299.96663 * 3 2 1 27 27 H 1.09000 * 109.47221 * 59.96207 * 3 2 1 28 28 H 1.08997 * 109.45441 * 289.92762 * 4 2 1 29 29 H 1.09001 * 109.45025 * 49.88558 * 4 2 1 30 30 H 1.09006 * 109.62589 * 289.92419 * 5 4 2 31 31 H 1.09000 * 109.71682 * 169.38054 * 5 4 2 32 32 H 0.97002 * 119.99838 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0396 1.4426 0.0000 4 6 2.0401 -0.7209 -1.2508 5 6 3.5526 -0.5094 -1.3870 6 6 4.1983 -0.8329 -0.0655 7 7 5.4759 -1.0777 0.2070 8 7 5.5897 -1.3169 1.4697 9 7 4.4366 -1.2394 2.0451 10 1 4.2595 -1.3787 2.9886 11 6 3.5245 -0.9322 1.1070 12 6 2.0410 -0.7226 1.2534 13 1 1.5417 -1.6866 1.3509 14 6 1.7648 0.1179 2.4733 15 1 2.2415 1.0806 2.5850 16 6 0.9035 -0.3419 3.4468 17 7 0.4011 -1.5543 3.3608 18 14 0.4503 0.7570 4.8877 19 1 -0.2047 1.9904 4.3828 20 1 -0.4832 0.0332 5.7878 21 1 1.6788 1.1207 5.6385 22 1 -0.3634 0.5143 0.8896 23 1 -0.3634 0.5133 -0.8904 24 1 -0.3634 -1.0277 0.0005 25 1 3.1296 1.4428 0.0005 26 1 1.6767 1.9562 -0.8903 27 1 1.6756 1.9565 0.8896 28 1 1.8308 -1.7872 -1.1660 29 1 1.5366 -0.3210 -2.1310 30 1 3.7549 0.5289 -1.6502 31 1 3.9480 -1.1684 -2.1600 32 1 -0.2046 -1.8780 4.0459 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261208631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:26 Heat of formation + Delta-G solvation = 50.321752 kcal Electronic energy + Delta-G solvation = -15845.305317 eV Core-core repulsion = 13420.145412 eV Total energy + Delta-G solvation = -2425.159905 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.15623 -39.41083 -35.31842 -34.04288 -32.63528 -31.12422 -28.10528 -27.89874 -26.19943 -24.11005 -23.19572 -21.95613 -19.18263 -18.70613 -18.10926 -16.92606 -16.53735 -15.78155 -15.08483 -14.93338 -14.67622 -14.30588 -13.78942 -13.38375 -12.95595 -12.82707 -12.74661 -12.59491 -12.29914 -12.17861 -12.02796 -11.83242 -11.62363 -11.33893 -11.31658 -10.83990 -10.60576 -10.56596 -9.52208 -8.16854 -6.26435 0.91432 1.40575 1.45303 1.49774 1.72821 2.16350 2.40486 3.11739 3.59886 4.06324 4.23002 4.32308 4.45314 4.56378 4.69407 4.75142 4.79691 5.09353 5.11861 5.18965 5.19956 5.27202 5.29352 5.41840 5.51769 5.58778 5.68016 5.74288 5.84201 5.89780 6.22316 6.29427 6.87909 7.41070 7.67559 8.89109 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.012933 C = 0.010146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.779872 B = 2164.495845 C = 2759.042423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.051 4.051 3 C -0.124 4.124 4 C -0.106 4.106 5 C -0.021 4.021 6 C -0.062 4.062 7 N -0.291 5.291 8 N -0.145 5.145 9 N -0.375 5.375 10 H 0.452 0.548 11 C 0.040 3.960 12 C 0.103 3.897 13 H 0.059 0.941 14 C -0.513 4.513 15 H 0.051 0.949 16 C 0.037 3.963 17 N -0.912 5.912 18 Si 0.939 3.061 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.276 1.276 22 H 0.037 0.963 23 H 0.065 0.935 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.475 2.825 -6.177 6.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.052 4.052 3 C -0.181 4.181 4 C -0.144 4.144 5 C -0.060 4.060 6 C -0.203 4.203 7 N -0.157 5.157 8 N -0.123 5.123 9 N -0.093 5.093 10 H 0.298 0.702 11 C -0.098 4.098 12 C 0.082 3.918 13 H 0.077 0.923 14 C -0.552 4.552 15 H 0.069 0.931 16 C -0.164 4.164 17 N -0.550 5.550 18 Si 0.765 3.235 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.201 1.201 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.006 2.426 -5.985 6.536 hybrid contribution -1.377 0.364 1.906 2.380 sum -0.371 2.791 -4.079 4.956 Atomic orbital electron populations 1.21515 0.94394 1.00397 1.00658 1.20616 0.95520 0.95498 0.93576 1.21758 0.99492 0.95776 1.01074 1.21727 0.93910 1.00283 0.98433 1.19966 0.94193 1.02451 0.89398 1.22170 0.89751 1.10077 0.98272 1.74547 1.19247 1.16198 1.05732 1.78301 1.06456 1.24915 1.02592 1.44600 1.05640 1.46211 1.12836 0.70228 1.23240 0.97893 1.00609 0.88045 1.17826 0.81821 0.97689 0.94444 0.92273 1.21011 1.26881 1.03411 1.03861 0.93077 1.25483 0.95763 0.95527 0.99630 1.69957 1.32324 1.16998 1.35743 0.85910 0.78162 0.79552 0.79855 1.19687 1.21404 1.20145 0.94335 0.91608 0.94534 0.94478 0.91755 0.93696 0.92883 0.88628 0.89398 0.89455 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.95 8.31 71.98 0.60 -3.35 16 2 C -0.05 -1.83 0.55 -52.00 -0.03 -1.86 16 3 C -0.12 -4.22 7.23 71.98 0.52 -3.70 16 4 C -0.11 -3.17 4.84 30.74 0.15 -3.02 16 5 C -0.02 -0.65 5.65 29.92 0.17 -0.48 16 6 C -0.06 -2.47 6.34 41.75 0.26 -2.20 16 7 N -0.29 -12.47 12.40 -48.99 -0.61 -13.08 16 8 N -0.14 -6.19 13.40 37.02 0.50 -5.70 16 9 N -0.38 -15.60 6.92 -48.27 -0.33 -15.94 16 10 H 0.45 17.29 8.96 -219.68 -1.97 15.32 16 11 C 0.04 1.70 5.98 41.50 0.25 1.94 16 12 C 0.10 4.47 2.03 -12.19 -0.02 4.45 16 13 H 0.06 2.96 6.92 -2.39 -0.02 2.95 16 14 C -0.51 -24.13 6.40 25.60 0.16 -23.97 16 15 H 0.05 2.47 6.85 -2.91 -0.02 2.45 16 16 C 0.04 1.79 5.45 84.66 0.46 2.25 16 17 N -0.91 -46.84 12.62 21.45 0.27 -46.57 16 18 Si 0.94 39.51 29.54 68.60 2.03 41.54 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 20 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 22 H 0.04 1.53 7.60 -2.39 -0.02 1.51 16 23 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 1.31 5.64 -2.39 -0.01 1.30 16 26 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.04 1.69 6.52 -2.39 -0.02 1.67 16 28 H 0.05 1.67 8.12 -2.39 -0.02 1.65 16 29 H 0.10 2.25 8.11 -2.39 -0.02 2.23 16 30 H 0.09 2.47 7.00 -2.38 -0.02 2.45 16 31 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 Total: -1.00 -54.87 255.60 3.54 -51.33 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.84 Total: 18.36 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 2.52 Total: -29.94 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -0.17 Total: -81.28 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -54.87 3.54 -51.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261208631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.650 kcal (2) G-P(sol) polarization free energy of solvation -54.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds