Wall clock time and date at job start Mon Mar 30 2020 02:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47465 * 2 1 4 4 C 1.35738 * 117.00349 * 180.02562 * 3 2 1 5 5 C 1.39286 * 120.84370 * 0.02562 * 4 3 2 6 6 C 1.37950 * 119.09393 * 179.97438 * 5 4 3 7 7 N 1.31980 * 120.82306 * 359.75129 * 6 5 4 8 8 C 1.31951 * 121.85902 * 0.52122 * 7 6 5 9 9 C 1.50704 * 119.58440 * 179.75527 * 8 7 6 10 10 H 1.08992 * 109.47073 * 334.72099 * 9 8 7 11 11 C 1.53007 * 109.46669 * 214.72789 * 9 8 7 12 12 C 1.50699 * 109.47328 * 94.72836 * 9 8 7 13 13 H 1.07997 * 119.99854 * 29.44818 * 12 9 8 14 14 C 1.37872 * 119.99636 * 209.44687 * 12 9 8 15 15 N 1.31512 * 120.00560 * 353.39409 * 14 12 9 16 16 Si 1.86806 * 119.99539 * 173.39107 * 14 12 9 17 17 H 1.48507 * 109.46986 * 180.02562 * 16 14 12 18 18 H 1.48495 * 109.47597 * 300.00243 * 16 14 12 19 19 H 1.48505 * 109.46801 * 60.00548 * 16 14 12 20 20 C 1.37991 * 120.82614 * 359.47724 * 8 7 6 21 21 H 1.09001 * 109.46917 * 60.00042 * 1 2 3 22 22 H 1.08993 * 109.47559 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47152 * 300.00180 * 1 2 3 24 24 H 1.09002 * 109.47152 * 239.99820 * 2 1 3 25 25 H 1.09001 * 109.46917 * 119.99957 * 2 1 3 26 26 H 1.07997 * 120.45502 * 359.96218 * 5 4 3 27 27 H 1.07993 * 119.59170 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.46791 * 294.13033 * 11 9 8 29 29 H 1.08999 * 109.47483 * 54.13284 * 11 9 8 30 30 H 1.09000 * 109.46949 * 174.13327 * 11 9 8 31 31 H 0.96996 * 119.99571 * 354.70583 * 15 14 12 32 32 H 1.07992 * 120.45712 * 180.23351 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3521 1.5250 -0.0005 5 6 4.2167 0.4330 -0.0016 6 6 5.5782 0.6555 -0.0027 7 7 6.0628 1.8831 -0.0076 8 6 5.2762 2.9424 -0.0015 9 6 5.8849 4.3211 -0.0020 10 1 6.8839 4.2773 0.4316 11 6 5.0104 5.2648 0.8262 12 6 5.9733 4.8307 -1.4175 13 1 5.2540 4.5054 -2.1544 14 6 6.9725 5.7122 -1.7715 15 7 7.7681 6.2092 -0.8498 16 14 7.1964 6.2006 -3.5607 17 1 8.3309 7.1519 -3.6759 18 1 7.4815 4.9902 -4.3723 19 1 5.9549 6.8476 -4.0561 20 6 3.9033 2.8038 -0.0004 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8267 -0.5740 -0.0014 27 1 6.2559 -0.1853 -0.0039 28 1 4.0452 5.3901 0.3354 29 1 4.8607 4.8431 1.8200 30 1 5.5024 6.2336 0.9129 31 1 7.6048 6.0168 0.0868 32 1 3.2651 3.6749 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261210601.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:56 Heat of formation + Delta-G solvation = -22.030040 kcal Electronic energy + Delta-G solvation = -14675.287639 eV Core-core repulsion = 12214.697574 eV Total energy + Delta-G solvation = -2460.590065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.17633 -38.12536 -34.67940 -32.26916 -31.52254 -30.17472 -28.67191 -24.97395 -24.07064 -22.82858 -22.23343 -20.17388 -17.89364 -16.59417 -16.27906 -16.11359 -15.20215 -14.38238 -13.94101 -13.70781 -13.47901 -13.29230 -12.91924 -12.70740 -12.31300 -12.02776 -11.32987 -11.28408 -10.96350 -10.94218 -10.68850 -10.42293 -10.08895 -9.84982 -8.91996 -8.71852 -8.40701 -8.37122 -8.10604 -6.36323 -4.07265 1.74313 1.92184 3.22957 3.45932 3.48914 3.66897 4.42177 4.59603 4.78955 4.82887 4.97709 5.09463 5.20142 5.28251 5.39083 5.43861 5.62569 5.77462 5.84553 6.05849 6.21674 6.39052 6.50068 6.55594 6.66501 6.82697 7.19740 7.31856 7.47941 7.58984 8.13328 8.42302 8.81828 8.85455 9.62598 11.02205 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036761 B = 0.006817 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.496075 B = 4106.512621 C = 4210.684279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.315 6.315 4 C 0.161 3.839 5 C -0.293 4.293 6 C 0.132 3.868 7 N -0.507 5.507 8 C 0.216 3.784 9 C 0.064 3.936 10 H 0.057 0.943 11 C -0.135 4.135 12 C -0.583 4.583 13 H 0.049 0.951 14 C 0.026 3.974 15 N -0.906 5.906 16 Si 1.067 2.933 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.287 1.287 20 C -0.209 4.209 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.126 0.874 27 H 0.147 0.853 28 H 0.044 0.956 29 H 0.021 0.979 30 H 0.052 0.948 31 H 0.272 0.728 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.958 -11.389 2.215 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.227 6.227 4 C 0.109 3.891 5 C -0.315 4.315 6 C -0.026 4.026 7 N -0.219 5.219 8 C 0.081 3.919 9 C 0.044 3.956 10 H 0.075 0.925 11 C -0.193 4.193 12 C -0.622 4.622 13 H 0.068 0.932 14 C -0.179 4.179 15 N -0.541 5.541 16 Si 0.895 3.105 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.214 1.214 20 C -0.229 4.229 21 H 0.085 0.915 22 H 0.095 0.905 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.144 0.856 27 H 0.165 0.835 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.285 -10.240 1.190 13.874 hybrid contribution -1.950 -1.485 0.946 2.627 sum -11.234 -11.725 2.136 16.378 Atomic orbital electron populations 1.21769 0.92893 1.02615 1.03558 1.22744 0.95682 0.82343 1.01350 1.86038 1.19248 1.28990 1.88433 1.19316 0.81989 0.94418 0.93419 1.21948 0.95792 0.98232 1.15479 1.22508 0.92167 0.94994 0.92958 1.67695 1.40473 0.98319 1.15437 1.21957 0.88341 0.96190 0.85413 1.18062 0.95588 0.84331 0.97593 0.92468 1.22009 1.00162 1.00339 0.96824 1.21695 1.17057 1.29542 0.93863 0.93234 1.25810 0.92331 0.93627 1.06089 1.70772 1.38215 1.42730 1.02361 0.83587 0.76295 0.76410 0.74241 1.20664 1.21440 1.21393 1.21406 0.96652 0.95021 1.09869 0.91491 0.90529 0.91557 0.92108 0.92168 0.85573 0.83523 0.93676 0.95971 0.92886 0.91700 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.61 5.49 37.16 0.20 0.81 16 3 O -0.31 -5.06 10.15 -18.92 -0.19 -5.26 16 4 C 0.16 2.95 6.74 -38.82 -0.26 2.69 16 5 C -0.29 -4.83 9.11 -39.30 -0.36 -5.19 16 6 C 0.13 2.40 11.17 -17.59 -0.20 2.21 16 7 N -0.51 -11.57 10.27 -9.55 -0.10 -11.66 16 8 C 0.22 5.10 5.77 -82.63 -0.48 4.62 16 9 C 0.06 1.64 2.26 -92.92 -0.21 1.43 16 10 H 0.06 1.61 6.92 -51.93 -0.36 1.25 16 11 C -0.14 -3.08 8.36 37.16 0.31 -2.77 16 12 C -0.58 -16.51 8.29 -34.44 -0.29 -16.80 16 13 H 0.05 1.42 7.82 -52.49 -0.41 1.01 16 14 C 0.03 0.76 5.45 -17.82 -0.10 0.66 16 15 N -0.91 -27.17 13.55 55.43 0.75 -26.42 16 16 Si 1.07 25.42 29.91 -169.99 -5.08 20.34 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 C -0.21 -4.40 9.14 -39.30 -0.36 -4.76 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.64 7.71 -51.93 -0.40 0.24 16 25 H 0.06 0.61 7.71 -51.93 -0.40 0.21 16 26 H 0.13 1.61 6.47 -52.49 -0.34 1.27 16 27 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 28 H 0.04 0.98 6.82 -51.93 -0.35 0.62 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 1.25 7.71 -51.93 -0.40 0.85 16 31 H 0.27 8.07 6.41 -40.82 -0.26 7.81 16 32 H 0.14 2.83 6.45 -52.49 -0.34 2.49 16 LS Contribution 271.90 15.07 4.10 4.10 Total: -1.00 -31.70 271.90 -6.05 -37.75 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.17 Total: -0.81 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.35 Total: -18.04 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.65 Total: -38.08 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.19 Total: -5.26 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.70 -6.05 -37.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210601.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.717 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds