Wall clock time and date at job start Mon Mar 30 2020 02:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47465 * 2 1 4 4 C 1.35738 * 117.00349 * 180.02562 * 3 2 1 5 5 C 1.39286 * 120.84370 * 0.02562 * 4 3 2 6 6 C 1.37950 * 119.09393 * 179.97438 * 5 4 3 7 7 N 1.31980 * 120.82306 * 359.75129 * 6 5 4 8 8 C 1.31951 * 121.85902 * 0.52122 * 7 6 5 9 9 C 1.50704 * 119.58440 * 179.75527 * 8 7 6 10 10 H 1.08992 * 109.47073 * 334.72099 * 9 8 7 11 11 C 1.53007 * 109.46669 * 214.72789 * 9 8 7 12 12 C 1.50699 * 109.47328 * 94.72836 * 9 8 7 13 13 H 1.07997 * 119.99854 * 29.44818 * 12 9 8 14 14 C 1.37872 * 119.99636 * 209.44687 * 12 9 8 15 15 N 1.31512 * 120.00560 * 353.39409 * 14 12 9 16 16 Si 1.86806 * 119.99539 * 173.39107 * 14 12 9 17 17 H 1.48507 * 109.46986 * 180.02562 * 16 14 12 18 18 H 1.48495 * 109.47597 * 300.00243 * 16 14 12 19 19 H 1.48505 * 109.46801 * 60.00548 * 16 14 12 20 20 C 1.37991 * 120.82614 * 359.47724 * 8 7 6 21 21 H 1.09001 * 109.46917 * 60.00042 * 1 2 3 22 22 H 1.08993 * 109.47559 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47152 * 300.00180 * 1 2 3 24 24 H 1.09002 * 109.47152 * 239.99820 * 2 1 3 25 25 H 1.09001 * 109.46917 * 119.99957 * 2 1 3 26 26 H 1.07997 * 120.45502 * 359.96218 * 5 4 3 27 27 H 1.07993 * 119.59170 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.46791 * 294.13033 * 11 9 8 29 29 H 1.08999 * 109.47483 * 54.13284 * 11 9 8 30 30 H 1.09000 * 109.46949 * 174.13327 * 11 9 8 31 31 H 0.96996 * 119.99571 * 354.70583 * 15 14 12 32 32 H 1.07992 * 120.45712 * 180.23351 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3521 1.5250 -0.0005 5 6 4.2167 0.4330 -0.0016 6 6 5.5782 0.6555 -0.0027 7 7 6.0628 1.8831 -0.0076 8 6 5.2762 2.9424 -0.0015 9 6 5.8849 4.3211 -0.0020 10 1 6.8839 4.2773 0.4316 11 6 5.0104 5.2648 0.8262 12 6 5.9733 4.8307 -1.4175 13 1 5.2540 4.5054 -2.1544 14 6 6.9725 5.7122 -1.7715 15 7 7.7681 6.2092 -0.8498 16 14 7.1964 6.2006 -3.5607 17 1 8.3309 7.1519 -3.6759 18 1 7.4815 4.9902 -4.3723 19 1 5.9549 6.8476 -4.0561 20 6 3.9033 2.8038 -0.0004 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8267 -0.5740 -0.0014 27 1 6.2559 -0.1853 -0.0039 28 1 4.0452 5.3901 0.3354 29 1 4.8607 4.8431 1.8200 30 1 5.5024 6.2336 0.9129 31 1 7.6048 6.0168 0.0868 32 1 3.2651 3.6749 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261210601.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:56 Heat of formation + Delta-G solvation = -42.342188 kcal Electronic energy + Delta-G solvation = -14676.168440 eV Core-core repulsion = 12214.697574 eV Total energy + Delta-G solvation = -2461.470866 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.60196 -39.48404 -36.61416 -33.51686 -33.25831 -31.44207 -30.34247 -27.01016 -25.48966 -24.20294 -23.68036 -21.80688 -19.42943 -18.48693 -17.76372 -17.14547 -16.65735 -15.79025 -15.74705 -15.58210 -14.97036 -14.61802 -14.43827 -13.65582 -13.56951 -13.40549 -13.16566 -12.97375 -12.61648 -12.46664 -11.98108 -11.95520 -11.87905 -11.75415 -10.84643 -10.52769 -10.30817 -9.85577 -9.78929 -8.62010 -6.33336 0.23080 0.44097 1.52760 1.60723 1.80435 2.07999 2.56311 2.92054 3.20958 3.52618 3.74055 3.97236 4.03101 4.15207 4.27777 4.34889 4.37970 4.50626 4.69970 4.80246 4.83665 4.91646 4.95217 5.02056 5.04162 5.22416 5.27962 5.55474 5.68021 5.99987 6.17975 6.29889 6.59827 7.27194 7.44215 8.76619 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036761 B = 0.006817 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.496075 B = 4106.512621 C = 4210.684279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 O -0.327 6.327 4 C 0.167 3.833 5 C -0.272 4.272 6 C 0.126 3.874 7 N -0.549 5.549 8 C 0.188 3.812 9 C 0.060 3.940 10 H 0.021 0.979 11 C -0.121 4.121 12 C -0.593 4.593 13 H 0.039 0.961 14 C -0.023 4.023 15 N -0.931 5.931 16 Si 1.112 2.888 17 H -0.280 1.280 18 H -0.278 1.278 19 H -0.268 1.268 20 C -0.225 4.225 21 H 0.060 0.940 22 H 0.107 0.893 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.173 0.827 27 H 0.186 0.814 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 -13.823 1.648 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.239 6.239 4 C 0.113 3.887 5 C -0.293 4.293 6 C -0.031 4.031 7 N -0.262 5.262 8 C 0.053 3.947 9 C 0.041 3.959 10 H 0.039 0.961 11 C -0.179 4.179 12 C -0.631 4.631 13 H 0.058 0.942 14 C -0.222 4.222 15 N -0.568 5.568 16 Si 0.933 3.067 17 H -0.205 1.205 18 H -0.204 1.204 19 H -0.193 1.193 20 C -0.246 4.246 21 H 0.079 0.921 22 H 0.125 0.875 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.191 0.809 27 H 0.203 0.797 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.044 -12.694 0.638 16.838 hybrid contribution -1.548 -0.930 1.184 2.159 sum -12.592 -13.624 1.822 18.641 Atomic orbital electron populations 1.21820 0.91067 1.04477 1.03152 1.23221 0.97206 0.80165 1.02836 1.86051 1.17710 1.32346 1.87830 1.19306 0.83447 0.93801 0.92130 1.22363 0.94706 0.99822 1.12368 1.23166 0.93941 0.94286 0.91688 1.67590 1.41690 0.99823 1.17090 1.21496 0.89426 0.95335 0.88429 1.17932 0.94529 0.86985 0.96498 0.96121 1.21807 0.99625 0.98881 0.97618 1.21954 1.16762 1.29335 0.95033 0.94236 1.27198 0.92118 0.93526 1.09380 1.70878 1.39424 1.44336 1.02140 0.83014 0.77072 0.76609 0.69967 1.20502 1.20390 1.19269 1.21287 0.95648 0.96597 1.11066 0.92078 0.87481 0.91851 0.90729 0.90372 0.80925 0.79738 0.92902 0.93941 0.94522 0.92940 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.04 0.74 5.49 71.98 0.39 1.13 16 3 O -0.33 -9.65 10.15 -90.62 -0.92 -10.57 16 4 C 0.17 5.75 6.74 22.76 0.15 5.90 16 5 C -0.27 -7.97 9.11 22.45 0.20 -7.76 16 6 C 0.13 4.29 11.17 84.60 0.95 5.24 16 7 N -0.55 -25.04 10.27 -184.12 -1.89 -26.93 16 8 C 0.19 9.02 5.77 42.48 0.25 9.27 16 9 C 0.06 3.23 2.26 -12.28 -0.03 3.20 16 10 H 0.02 1.23 6.92 -2.39 -0.02 1.22 16 11 C -0.12 -5.72 8.36 71.98 0.60 -5.12 16 12 C -0.59 -34.59 8.29 25.60 0.21 -34.38 16 13 H 0.04 2.32 7.82 -2.91 -0.02 2.30 16 14 C -0.02 -1.37 5.45 84.65 0.46 -0.91 16 15 N -0.93 -57.82 13.55 21.44 0.29 -57.53 16 16 Si 1.11 51.66 29.91 68.60 2.05 53.71 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 20 C -0.23 -9.47 9.14 22.45 0.21 -9.26 16 21 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 1.20 7.71 -2.39 -0.02 1.19 16 25 H 0.08 1.20 7.71 -2.39 -0.02 1.18 16 26 H 0.17 3.39 6.47 -2.91 -0.02 3.37 16 27 H 0.19 4.66 8.06 -2.91 -0.02 4.64 16 28 H 0.05 2.35 6.82 -2.39 -0.02 2.34 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.79 7.71 -2.39 -0.02 1.77 16 31 H 0.26 16.29 6.41 -92.71 -0.59 15.70 16 32 H 0.13 5.51 6.45 -2.91 -0.02 5.49 16 Total: -1.00 -71.26 271.90 4.94 -66.31 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.28 Total: 9.02 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 4.14 Total: -34.01 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -1.60 Total: -84.46 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.92 Total: -10.57 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.05 Total: 53.71 kcal Total: -71.26 4.94 -66.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210601.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.969 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds