Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35915 * 116.99609 * 179.97438 * 3 2 1 5 5 C 1.39140 * 120.46996 * 179.72208 * 4 3 2 6 6 C 1.38531 * 118.37478 * 179.75860 * 5 4 3 7 7 C 1.38257 * 119.21985 * 0.49566 * 6 5 4 8 8 C 1.50700 * 119.56066 * 179.74417 * 7 6 5 9 9 H 1.08996 * 109.47466 * 155.01632 * 8 7 6 10 10 C 1.53008 * 109.46777 * 35.02264 * 8 7 6 11 11 C 1.50692 * 109.47213 * 275.02872 * 8 7 6 12 12 H 1.08000 * 120.00534 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00250 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99797 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 120.00362 * 179.97438 * 13 11 8 16 16 H 1.48494 * 109.46652 * 60.00022 * 15 13 11 17 17 H 1.48496 * 109.46844 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47000 * 300.00223 * 15 13 11 19 19 N 1.31843 * 120.88754 * 359.76926 * 7 6 5 20 20 C 1.31842 * 121.77971 * 359.97438 * 19 7 6 21 21 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 22 22 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 23 23 H 1.09008 * 109.47419 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 25 25 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 26 26 H 1.07996 * 120.81203 * 0.02562 * 5 4 3 27 27 H 1.07996 * 120.39615 * 180.22134 * 6 5 4 28 28 H 1.09003 * 109.47050 * 179.97438 * 10 8 7 29 29 H 1.09001 * 109.47242 * 300.00213 * 10 8 7 30 30 H 1.09003 * 109.47207 * 60.00167 * 10 8 7 31 31 H 0.97002 * 120.00393 * 179.97438 * 14 13 11 32 32 H 1.08001 * 119.66234 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8962 2.8066 -0.0052 6 6 5.2752 2.9377 0.0007 7 6 6.0613 1.8004 0.0017 8 6 7.5624 1.9341 0.0023 9 1 8.0068 1.0388 0.4369 10 6 7.9651 3.1565 0.8297 11 6 8.0523 2.1020 -1.4129 12 1 7.3474 2.1106 -2.2310 13 6 9.4006 2.2447 -1.6633 14 7 10.2591 2.2348 -0.6671 15 14 10.0081 2.4521 -3.4176 16 1 9.4021 3.6714 -4.0102 17 1 11.4872 2.5840 -3.4169 18 1 9.6178 1.2652 -4.2201 19 7 5.5154 0.6003 0.0015 20 6 4.2077 0.4323 0.0010 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.2577 3.6776 -0.0098 27 1 5.7310 3.9168 0.0001 28 1 9.0509 3.2530 0.8305 29 1 7.5207 4.0519 0.3951 30 1 7.6107 3.0352 1.8533 31 1 11.2078 2.3348 -0.8432 32 1 3.7972 -0.5666 0.0006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261220978.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = -15.332573 kcal Electronic energy + Delta-G solvation = -14567.695388 eV Core-core repulsion = 12107.395747 eV Total energy + Delta-G solvation = -2460.299641 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.13738 -38.00499 -34.28283 -32.32680 -31.51806 -30.73784 -27.92530 -25.22616 -24.21945 -22.91733 -21.93076 -19.97938 -17.97673 -16.42678 -16.09278 -16.02624 -15.29020 -14.36854 -14.07125 -13.59190 -13.53355 -12.84691 -12.80207 -12.49557 -12.18286 -11.72430 -11.54279 -11.36461 -10.92407 -10.88186 -10.67273 -10.34030 -10.10252 -9.77415 -9.12802 -9.07703 -8.66295 -8.32395 -7.64790 -5.99934 -4.06581 1.76211 1.92190 3.32753 3.33487 3.37452 3.41022 4.37256 4.55818 4.84490 4.87973 4.98503 5.17290 5.22910 5.33093 5.41484 5.57349 5.62040 5.67039 5.89032 6.06220 6.23426 6.46976 6.71975 6.87247 6.91949 7.15207 7.30266 7.62739 7.69437 7.87659 8.07239 8.36232 8.81495 8.93850 9.57037 11.05841 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047702 B = 0.006201 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.831786 B = 4514.359221 C = 4726.436016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.319 6.319 4 C 0.040 3.960 5 C -0.111 4.111 6 C -0.134 4.134 7 C 0.147 3.853 8 C 0.085 3.915 9 H 0.047 0.953 10 C -0.136 4.136 11 C -0.503 4.503 12 H 0.053 0.947 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 N -0.455 5.455 20 C 0.016 3.984 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.131 0.869 27 H 0.142 0.858 28 H 0.090 0.910 29 H 0.031 0.969 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.321 -1.427 2.017 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.233 6.233 4 C -0.006 4.006 5 C -0.138 4.138 6 C -0.154 4.154 7 C 0.009 3.991 8 C 0.066 3.934 9 H 0.065 0.935 10 C -0.194 4.194 11 C -0.542 4.542 12 H 0.072 0.928 13 C -0.138 4.138 14 N -0.528 5.528 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 N -0.165 5.165 20 C -0.141 4.141 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.149 0.851 27 H 0.160 0.840 28 H 0.108 0.892 29 H 0.050 0.950 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.765 -2.015 2.056 14.062 hybrid contribution -0.213 0.571 -1.020 1.189 sum -13.977 -1.444 1.036 14.090 Atomic orbital electron populations 1.21756 0.93046 1.02593 1.03300 1.22711 0.95566 0.82560 1.01411 1.85994 1.19015 1.28646 1.89620 1.19902 0.82849 0.95513 1.02333 1.20856 0.95221 0.94807 1.02904 1.22005 0.92040 1.01428 0.99882 1.22185 0.99390 0.86531 0.90991 1.17793 0.82445 0.96338 0.96824 0.93470 1.21885 1.04692 0.97656 0.95203 1.20894 0.92004 1.50151 0.91118 0.92824 1.24911 0.96638 0.95082 0.97136 1.69868 1.02316 1.50102 1.30507 0.86594 0.77516 0.78710 0.84831 1.20248 1.21198 1.20278 1.67531 1.11019 1.27209 1.10717 1.22822 0.90060 0.97484 1.03774 0.91686 0.91668 0.90567 0.92139 0.92179 0.85083 0.84034 0.89177 0.94972 0.97033 0.92809 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.05 0.59 5.47 37.16 0.20 0.80 16 3 O -0.32 -4.82 10.15 -19.47 -0.20 -5.02 16 4 C 0.04 0.71 6.71 -39.07 -0.26 0.44 16 5 C -0.11 -1.96 10.13 -39.14 -0.40 -2.36 16 6 C -0.13 -2.66 9.17 -39.47 -0.36 -3.02 16 7 C 0.15 3.39 5.73 -82.58 -0.47 2.92 16 8 C 0.09 2.20 2.61 -92.92 -0.24 1.95 16 9 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 10 C -0.14 -3.23 8.39 37.16 0.31 -2.92 16 11 C -0.50 -14.00 8.55 -34.44 -0.29 -14.29 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 14 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 15 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 N -0.46 -10.24 10.27 -9.35 -0.10 -10.34 16 20 C 0.02 0.31 10.22 -17.38 -0.18 0.13 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 23 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 25 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 26 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 27 H 0.14 2.63 6.30 -52.49 -0.33 2.30 16 28 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 29 H 0.03 0.70 6.49 -51.93 -0.34 0.36 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 32 H 0.15 2.21 6.32 -52.49 -0.33 1.88 16 LS Contribution 270.51 15.07 4.08 4.08 Total: -1.00 -30.10 270.51 -6.21 -36.31 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.19 Total: -1.26 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -1.41 Total: -15.56 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.53 Total: -34.94 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.20 Total: -5.02 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.10 -6.21 -36.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220978.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.976 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds