Wall clock time and date at job start Mon Mar 30 2020 02:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42900 * 109.47341 * 2 1 4 4 C 1.35912 * 117.00184 * 179.97438 * 3 2 1 5 5 C 1.39129 * 120.47423 * 179.97438 * 4 3 2 6 6 C 1.38543 * 118.37623 * 180.02562 * 5 4 3 7 7 C 1.38255 * 119.21769 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.55176 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46456 * 204.99866 * 8 7 6 10 10 C 1.53005 * 109.47195 * 324.99624 * 8 7 6 11 11 C 1.50690 * 109.47193 * 85.00380 * 8 7 6 12 12 H 1.07999 * 120.00112 * 359.97438 * 11 8 7 13 13 C 1.37883 * 120.00062 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99502 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99948 * 179.97438 * 13 11 8 16 16 H 1.48491 * 109.47172 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46935 * 119.99977 * 15 13 11 18 18 H 1.48499 * 109.46950 * 239.99382 * 15 13 11 19 19 N 1.31843 * 120.88718 * 0.02562 * 7 6 5 20 20 C 1.31835 * 121.78261 * 359.97438 * 19 7 6 21 21 H 1.08996 * 109.47609 * 300.00077 * 1 2 3 22 22 H 1.08998 * 109.47119 * 60.00144 * 1 2 3 23 23 H 1.09004 * 109.47443 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47153 * 239.99645 * 2 1 3 25 25 H 1.09004 * 109.47336 * 120.00251 * 2 1 3 26 26 H 1.08002 * 120.81497 * 0.04742 * 5 4 3 27 27 H 1.07996 * 120.39076 * 180.29448 * 6 5 4 28 28 H 1.08997 * 109.47187 * 300.00380 * 10 8 7 29 29 H 1.08993 * 109.46766 * 60.00504 * 10 8 7 30 30 H 1.09001 * 109.46621 * 180.02562 * 10 8 7 31 31 H 0.97005 * 119.99351 * 180.02562 * 14 13 11 32 32 H 1.08008 * 119.65901 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8961 2.8065 0.0000 6 6 5.2753 2.9376 0.0001 7 6 6.0614 1.8003 0.0001 8 6 7.5624 1.9341 -0.0005 9 1 8.0068 1.0385 -0.4347 10 6 7.9652 3.1562 -0.8284 11 6 8.0523 2.1023 1.4146 12 1 7.3471 2.1118 2.2326 13 6 9.4006 2.2452 1.6651 14 7 10.2591 2.2342 0.6689 15 14 10.0077 2.4544 3.4193 16 1 8.8504 2.4335 4.3494 17 1 10.9354 1.3453 3.7575 18 1 10.7201 3.7513 3.5451 19 7 5.5153 0.6002 -0.0005 20 6 4.2077 0.4323 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8932 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.2577 3.6776 0.0000 27 1 5.7311 3.9167 0.0045 28 1 7.6109 3.0345 -1.8519 29 1 7.5208 4.0517 -0.3941 30 1 9.0509 3.2527 -0.8291 31 1 11.2078 2.3343 0.8452 32 1 3.7972 -0.5667 -0.0006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261220980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:24 Heat of formation + Delta-G solvation = -34.044879 kcal Electronic energy + Delta-G solvation = -14568.646641 eV Core-core repulsion = 12107.535574 eV Total energy + Delta-G solvation = -2461.111068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.55563 -39.34018 -36.19170 -33.57786 -33.31461 -31.99584 -29.52997 -27.28156 -25.41393 -24.58088 -23.11533 -21.73058 -19.21657 -18.42477 -17.57462 -17.09471 -17.08094 -16.09505 -15.56246 -15.07154 -14.79545 -14.46652 -13.91518 -13.78318 -13.49695 -13.36330 -13.10733 -12.85389 -12.62043 -12.45936 -12.24335 -12.04750 -11.79936 -11.65412 -11.05693 -10.58466 -10.52236 -10.15548 -9.15190 -8.09989 -6.24892 0.28148 0.43459 1.41240 1.42852 1.54610 2.19877 2.42679 2.95341 3.16391 3.58260 3.76623 4.00071 4.06984 4.12843 4.28493 4.38961 4.50691 4.74602 4.82666 4.93154 4.96256 4.96661 5.09731 5.18685 5.25784 5.32536 5.56539 5.71538 5.85343 6.05512 6.28802 6.34738 6.80942 7.24395 7.42563 8.94594 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047712 B = 0.006200 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.718611 B = 4514.943195 C = 4726.945719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.039 3.961 3 O -0.320 6.320 4 C 0.056 3.944 5 C -0.108 4.108 6 C -0.135 4.135 7 C 0.112 3.888 8 C 0.085 3.915 9 H 0.004 0.996 10 C -0.124 4.124 11 C -0.519 4.519 12 H 0.043 0.957 13 C 0.018 3.982 14 N -0.914 5.914 15 Si 0.959 3.041 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.273 1.273 19 N -0.490 5.490 20 C 0.010 3.990 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.101 0.899 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.165 0.835 27 H 0.150 0.850 28 H 0.027 0.973 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.264 0.736 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.478 -1.150 -1.454 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 O -0.234 6.234 4 C 0.009 3.991 5 C -0.134 4.134 6 C -0.155 4.155 7 C -0.025 4.025 8 C 0.066 3.934 9 H 0.022 0.978 10 C -0.182 4.182 11 C -0.557 4.557 12 H 0.061 0.939 13 C -0.181 4.181 14 N -0.553 5.553 15 Si 0.784 3.216 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.198 1.198 19 N -0.200 5.200 20 C -0.148 4.148 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.119 0.881 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.183 0.817 27 H 0.168 0.832 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.943 -1.738 -1.496 16.107 hybrid contribution 0.297 0.386 0.794 0.932 sum -15.646 -1.352 -0.702 15.720 Atomic orbital electron populations 1.21783 0.90736 1.04293 1.03353 1.23126 0.97411 0.80798 1.02241 1.86024 1.17198 1.31262 1.88899 1.19951 0.83955 0.95157 1.00076 1.21166 0.94518 0.96225 1.01497 1.22005 0.93032 1.00622 0.99831 1.21782 0.98142 0.88066 0.94529 1.17612 0.84879 0.95079 0.95852 0.97819 1.21693 1.02940 0.97513 0.96024 1.21178 0.92298 1.50280 0.91993 0.93899 1.25681 0.96749 0.94719 1.01002 1.70014 1.02493 1.50608 1.32206 0.85501 0.78111 0.77965 0.80033 1.19753 1.20613 1.19796 1.67389 1.13224 1.27513 1.11869 1.23236 0.88914 0.99393 1.03296 0.91715 0.91543 0.88057 0.91171 0.91489 0.81732 0.83193 0.95415 0.93483 0.91750 0.92693 0.80950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.04 0.75 5.47 71.98 0.39 1.14 16 3 O -0.32 -8.68 10.15 -92.56 -0.94 -9.62 16 4 C 0.06 1.82 6.71 22.60 0.15 1.97 16 5 C -0.11 -3.53 10.13 22.56 0.23 -3.30 16 6 C -0.14 -5.26 9.17 22.35 0.20 -5.05 16 7 C 0.11 5.25 5.73 42.56 0.24 5.49 16 8 C 0.08 4.54 2.61 -12.29 -0.03 4.51 16 9 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 10 C -0.12 -5.99 8.39 71.98 0.60 -5.38 16 11 C -0.52 -29.64 8.55 25.60 0.22 -29.42 16 12 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 13 C 0.02 0.98 5.30 84.66 0.45 1.43 16 14 N -0.91 -53.01 11.32 21.45 0.24 -52.76 16 15 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 N -0.49 -22.24 10.27 -183.48 -1.88 -24.12 16 20 C 0.01 0.34 10.22 84.81 0.87 1.21 16 21 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 1.24 7.68 -2.39 -0.02 1.22 16 25 H 0.07 1.23 7.68 -2.38 -0.02 1.21 16 26 H 0.17 4.22 8.06 -2.91 -0.02 4.20 16 27 H 0.15 5.42 6.31 -2.91 -0.02 5.40 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 2.07 6.49 -2.39 -0.02 2.06 16 30 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 31 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 32 H 0.17 4.93 6.32 -2.91 -0.02 4.91 16 Total: -1.00 -66.05 270.51 4.62 -61.44 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 1.10 Total: 7.39 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 4.07 Total: -28.61 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -1.64 Total: -76.89 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.94 Total: -9.62 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -66.05 4.62 -61.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.390 kcal (2) G-P(sol) polarization free energy of solvation -66.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds