Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.47039 * 2 1 4 4 C 1.35671 * 116.99499 * 180.02562 * 3 2 1 5 5 C 1.38928 * 119.67956 * 180.02562 * 4 3 2 6 6 C 1.38380 * 119.10996 * 179.97438 * 5 4 3 7 7 C 1.50694 * 120.75671 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46949 * 359.97438 * 7 6 5 9 9 C 1.53002 * 109.47068 * 240.00036 * 7 6 5 10 10 C 1.50704 * 109.46891 * 119.99987 * 7 6 5 11 11 H 1.07993 * 120.00061 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99629 * 180.02562 * 10 7 6 13 13 N 1.31509 * 120.00281 * 359.97438 * 12 10 7 14 14 Si 1.86806 * 119.99711 * 180.02562 * 12 10 7 15 15 H 1.48495 * 109.46938 * 59.99826 * 14 12 10 16 16 H 1.48494 * 109.46912 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46868 * 300.00081 * 14 12 10 18 18 C 1.38830 * 118.48696 * 359.97438 * 6 5 4 19 19 C 1.38052 * 119.28669 * 359.97438 * 18 6 5 20 20 N 1.31964 * 120.83627 * 359.97438 * 19 18 6 21 21 H 1.09002 * 109.47587 * 300.00730 * 1 2 3 22 22 H 1.09001 * 109.47047 * 60.00103 * 1 2 3 23 23 H 1.09002 * 109.47238 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47114 * 239.99700 * 2 1 3 25 25 H 1.09001 * 109.46425 * 119.99191 * 2 1 3 26 26 H 1.07995 * 120.44492 * 359.95163 * 5 4 3 27 27 H 1.09003 * 109.46603 * 180.02562 * 9 7 6 28 28 H 1.08999 * 109.47119 * 299.99753 * 9 7 6 29 29 H 1.08989 * 109.47302 * 60.00473 * 9 7 6 30 30 H 0.97004 * 120.00112 * 179.97438 * 13 12 10 31 31 H 1.07998 * 120.35753 * 179.97438 * 18 6 5 32 32 H 1.08007 * 119.57949 * 180.28077 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5250 -0.0005 5 6 3.8753 2.8117 0.0000 6 6 5.2489 2.9793 0.0000 7 6 5.8570 4.3580 -0.0001 8 1 5.0634 5.1052 -0.0005 9 6 6.7228 4.5335 -1.2494 10 6 6.7098 4.5309 1.2304 11 1 6.8024 3.7230 1.9411 12 6 7.3717 5.7206 1.4488 13 7 7.2593 6.7042 0.5832 14 14 8.4293 5.9347 2.9737 15 1 9.5109 4.9172 2.9728 16 1 9.0275 7.2938 2.9744 17 1 7.5896 5.7633 4.1865 18 6 6.0539 1.8482 0.0000 19 6 5.4646 0.5998 0.0005 20 7 4.1512 0.4718 0.0016 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5137 0.8901 26 1 3.2193 3.6696 0.0000 27 1 7.1630 5.5307 -1.2491 28 1 7.5164 3.7864 -1.2493 29 1 6.1061 4.4086 -2.1393 30 1 7.7247 7.5413 0.7370 31 1 7.1297 1.9439 -0.0005 32 1 6.0864 -0.2833 0.0052 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261224882.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = -37.728396 kcal Electronic energy + Delta-G solvation = -14597.900819 eV Core-core repulsion = 12136.630021 eV Total energy + Delta-G solvation = -2461.270797 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.50953 -39.13108 -36.58105 -33.86319 -32.94437 -30.98152 -30.57734 -27.23962 -25.28256 -24.27109 -23.54290 -21.66423 -18.93492 -18.39896 -17.35877 -17.19851 -16.82433 -16.47600 -15.56690 -14.95313 -14.83452 -14.55383 -14.11685 -13.58993 -13.41494 -13.23475 -12.93098 -12.79961 -12.76655 -12.47664 -12.29733 -12.09590 -11.75268 -11.65005 -11.16874 -10.52516 -10.45785 -10.22781 -9.37224 -8.12027 -6.26468 0.31807 0.47604 1.44408 1.45018 1.52925 2.11428 2.43242 2.94632 3.16992 3.46269 4.09492 4.11669 4.18031 4.26487 4.29568 4.46077 4.51198 4.81622 4.82931 4.91155 4.97220 5.02433 5.15357 5.17867 5.25339 5.41970 5.60339 5.65700 5.94007 6.02370 6.27626 6.37281 6.80485 6.93738 7.41630 8.92933 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043358 B = 0.006292 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.636483 B = 4448.997631 C = 4467.969303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 O -0.323 6.323 4 C 0.309 3.691 5 C -0.218 4.218 6 C 0.022 3.978 7 C 0.070 3.930 8 H 0.008 0.992 9 C -0.121 4.121 10 C -0.524 4.524 11 H 0.054 0.946 12 C 0.018 3.982 13 N -0.915 5.915 14 Si 0.957 3.043 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.276 1.276 18 C -0.205 4.205 19 C 0.135 3.865 20 N -0.560 5.560 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.103 0.897 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.128 0.872 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.024 0.976 30 H 0.263 0.737 31 H 0.140 0.860 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 -11.944 -1.463 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 O -0.232 6.232 4 C 0.131 3.869 5 C -0.239 4.239 6 C 0.015 3.985 7 C 0.051 3.949 8 H 0.026 0.974 9 C -0.179 4.179 10 C -0.562 4.562 11 H 0.072 0.928 12 C -0.181 4.181 13 N -0.554 5.554 14 Si 0.782 3.218 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.201 1.201 18 C -0.225 4.225 19 C -0.019 4.019 20 N -0.285 5.285 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.122 0.878 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.146 0.854 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -7.282 -12.406 -1.498 14.463 hybrid contribution 0.949 1.264 0.716 1.735 sum -6.333 -11.143 -0.782 12.840 Atomic orbital electron populations 1.21835 0.90921 1.04317 1.03210 1.22791 0.96296 0.80176 1.02161 1.86207 1.16667 1.32176 1.88106 1.19766 0.84234 0.89902 0.93046 1.21050 0.95634 0.95803 1.11368 1.20744 0.91997 0.97930 0.87825 1.17814 0.94395 0.87305 0.95359 0.97356 1.21616 0.98704 1.02479 0.95067 1.21249 1.28975 0.99654 1.06358 0.92764 1.25695 0.97692 0.95473 0.99289 1.69994 1.43843 1.04758 1.36779 0.85631 0.79082 0.77349 0.79734 1.19187 1.20855 1.20138 1.21995 1.01907 0.92527 1.06078 1.22843 0.88955 0.97755 0.92388 1.67326 1.07056 1.32543 1.21543 0.91843 0.91670 0.87827 0.91837 0.92086 0.85429 0.91785 0.94131 0.95694 0.92740 0.84250 0.79033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 10.28 71.98 0.74 -1.88 16 2 C 0.06 1.53 6.03 71.98 0.43 1.97 16 3 O -0.32 -10.97 10.12 -89.88 -0.91 -11.88 16 4 C 0.31 11.67 7.49 84.80 0.63 12.30 16 5 C -0.22 -9.05 9.69 22.47 0.22 -8.83 16 6 C 0.02 0.98 4.74 -19.69 -0.09 0.89 16 7 C 0.07 3.51 2.50 -12.29 -0.03 3.48 16 8 H 0.01 0.46 7.94 -2.39 -0.02 0.44 16 9 C -0.12 -5.74 8.79 71.98 0.63 -5.11 16 10 C -0.52 -28.24 8.27 25.60 0.21 -28.02 16 11 H 0.05 2.89 7.62 -2.91 -0.02 2.87 16 12 C 0.02 0.96 5.30 84.66 0.45 1.41 16 13 N -0.91 -51.59 11.32 21.45 0.24 -51.35 16 14 Si 0.96 42.67 29.54 68.60 2.03 44.69 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 18 C -0.20 -7.73 8.86 22.37 0.20 -7.53 16 19 C 0.13 4.34 11.18 84.63 0.95 5.28 16 20 N -0.56 -19.57 9.22 -308.95 -2.85 -22.41 16 21 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 25 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 26 H 0.13 5.24 8.00 -2.91 -0.02 5.22 16 27 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 28 H 0.04 1.79 7.48 -2.39 -0.02 1.78 16 29 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.14 5.08 7.67 -2.91 -0.02 5.06 16 32 H 0.19 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -60.71 274.57 3.94 -56.77 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.09 Total: 10.23 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 4.34 Total: -26.05 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -2.60 Total: -73.76 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.91 Total: -11.88 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -60.71 3.94 -56.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261224882.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.039 kcal (2) G-P(sol) polarization free energy of solvation -60.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds