Wall clock time and date at job start Mon Mar 30 2020 02:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47415 * 2 1 4 4 C 1.35912 * 117.00252 * 179.97438 * 3 2 1 5 5 C 1.38751 * 120.47376 * 0.02562 * 4 3 2 6 6 N 1.31814 * 120.68197 * 179.97438 * 5 4 3 7 7 C 1.31875 * 121.78127 * 0.02562 * 6 5 4 8 8 C 1.38206 * 120.88822 * 0.02562 * 7 6 5 9 9 C 1.38578 * 119.22509 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.81577 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47283 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47269 * 59.99783 * 10 9 8 13 13 C 1.50702 * 109.47028 * 300.00070 * 10 9 8 14 14 H 1.08002 * 119.99822 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00430 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99455 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 120.00316 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.46900 * 60.00440 * 17 15 13 19 19 H 1.48497 * 109.47060 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47464 * 300.00073 * 17 15 13 21 21 H 1.09003 * 109.47186 * 299.99871 * 1 2 3 22 22 H 1.09005 * 109.46977 * 59.99545 * 1 2 3 23 23 H 1.08997 * 109.47220 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47186 * 240.00129 * 2 1 3 25 25 H 1.08997 * 109.47131 * 120.00729 * 2 1 3 26 26 H 1.08003 * 119.65923 * 0.25057 * 5 4 3 27 27 H 1.07996 * 119.55453 * 179.97438 * 7 6 5 28 28 H 1.08001 * 120.38851 * 179.97438 * 8 7 6 29 29 H 1.08998 * 109.47355 * 180.02562 * 12 10 9 30 30 H 1.09004 * 109.46826 * 300.00225 * 12 10 9 31 31 H 1.09000 * 109.46952 * 59.99691 * 12 10 9 32 32 H 0.96997 * 120.00154 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3538 1.5253 0.0005 5 6 4.2080 0.4319 0.0005 6 7 5.5154 0.5999 0.0005 7 6 6.0615 1.8003 0.0011 8 6 5.2757 2.9372 0.0022 9 6 3.8961 2.8062 0.0022 10 6 3.0052 4.0216 0.0039 11 1 1.9616 3.7072 0.0041 12 6 3.2853 4.8611 -1.2442 13 6 3.2814 4.8451 1.2355 14 1 4.0272 4.5205 1.9460 15 6 2.5821 6.0129 1.4552 16 7 1.6743 6.4084 0.5896 17 14 2.9239 7.0332 2.9820 18 1 4.3460 7.4611 2.9832 19 1 2.0470 8.2316 2.9831 20 1 2.6510 6.2184 4.1932 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.7976 -0.5670 -0.0040 27 1 7.1372 1.8961 0.0015 28 1 5.7315 3.9163 0.0030 29 1 2.6412 5.7404 -1.2427 30 1 4.3290 5.1756 -1.2439 31 1 3.0856 4.2655 -2.1350 32 1 1.1825 7.2301 0.7439 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261230835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:12 Heat of formation + Delta-G solvation = -17.865659 kcal Electronic energy + Delta-G solvation = -15003.633438 eV Core-core repulsion = 12543.223954 eV Total energy + Delta-G solvation = -2460.409484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.09378 -37.64687 -34.87236 -32.11835 -31.35750 -29.58680 -28.65161 -25.15357 -24.23074 -22.76825 -21.81458 -19.93139 -17.59634 -16.56319 -15.97215 -15.77776 -15.37842 -14.46465 -13.88698 -13.48449 -13.29465 -12.72109 -12.63095 -12.34510 -12.21594 -11.65236 -11.42605 -11.21067 -10.95671 -10.90540 -10.63800 -10.43176 -10.08744 -9.88080 -9.11569 -8.77013 -8.49781 -8.36677 -7.74393 -6.01755 -4.08720 1.76269 2.03171 3.30758 3.35242 3.38314 3.60187 4.37214 4.49084 4.93853 5.08384 5.12751 5.26626 5.33846 5.39128 5.53570 5.67693 5.78779 5.94572 6.16565 6.21534 6.24325 6.57718 6.78723 6.95292 7.07436 7.14348 7.31851 7.69512 7.81943 7.98189 8.07308 8.35756 8.50011 8.92888 9.55208 11.04040 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024201 B = 0.009716 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.717554 B = 2881.013782 C = 3505.193756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.298 6.298 4 C 0.067 3.933 5 C 0.002 3.998 6 N -0.476 5.476 7 C 0.049 3.951 8 C -0.130 4.130 9 C -0.020 4.020 10 C 0.075 3.925 11 H 0.048 0.952 12 C -0.131 4.131 13 C -0.508 4.508 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.139 0.861 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.008 0.992 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 -9.337 -1.917 9.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.210 6.210 4 C 0.019 3.981 5 C -0.155 4.155 6 N -0.186 5.186 7 C -0.109 4.109 8 C -0.149 4.149 9 C -0.029 4.029 10 C 0.057 3.943 11 H 0.066 0.934 12 C -0.188 4.188 13 C -0.547 4.547 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.203 1.203 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.163 0.837 27 H 0.165 0.835 28 H 0.157 0.843 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.027 0.973 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.275 -9.783 -1.951 10.056 hybrid contribution -0.288 1.067 0.885 1.416 sum 0.987 -8.716 -1.066 8.836 Atomic orbital electron populations 1.21741 0.92973 1.02183 1.03860 1.22713 0.95945 0.82957 1.00745 1.86206 1.18497 1.27719 1.88591 1.19997 0.83356 0.94965 0.99733 1.22629 0.89710 0.97560 1.05623 1.67386 1.12222 1.26611 1.12381 1.22480 0.99928 0.87758 1.00704 1.21945 0.93207 1.00169 0.99623 1.20648 0.94785 0.94013 0.93419 1.17809 0.94129 0.87365 0.94992 0.93396 1.21786 1.00356 1.01698 0.94996 1.21027 1.21534 1.06409 1.05687 0.92625 1.24935 0.94916 0.97440 0.96518 1.69876 1.24137 1.23354 1.35258 0.86631 0.78213 0.79573 0.83451 1.20209 1.21233 1.20290 0.91349 0.91497 0.90869 0.92567 0.92468 0.83733 0.83541 0.84322 0.89377 0.95267 0.97332 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 37.16 0.38 -1.40 16 2 C 0.05 0.73 5.47 37.16 0.20 0.93 16 3 O -0.30 -5.84 9.04 -19.46 -0.18 -6.02 16 4 C 0.07 1.37 6.69 -39.07 -0.26 1.10 16 5 C 0.00 0.03 10.22 -17.37 -0.18 -0.14 16 6 N -0.48 -8.90 10.36 -13.13 -0.14 -9.04 16 7 C 0.05 0.87 11.18 -17.54 -0.20 0.68 16 8 C -0.13 -2.58 8.87 -39.47 -0.35 -2.93 16 9 C -0.02 -0.45 4.76 -104.18 -0.50 -0.95 16 10 C 0.08 1.92 2.47 -92.92 -0.23 1.69 16 11 H 0.05 1.34 7.11 -51.93 -0.37 0.98 16 12 C -0.13 -3.16 8.79 37.16 0.33 -2.84 16 13 C -0.51 -13.89 8.27 -34.44 -0.28 -14.17 16 14 H 0.06 1.51 7.62 -52.49 -0.40 1.11 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 17 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 25 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 26 H 0.15 2.16 6.32 -52.48 -0.33 1.83 16 27 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 28 H 0.14 2.65 7.67 -52.49 -0.40 2.25 16 29 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 30 H 0.03 0.66 7.48 -51.93 -0.39 0.27 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 270.42 15.07 4.08 4.08 Total: -1.00 -29.90 270.42 -6.06 -35.97 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.25 Total: -0.27 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -1.18 Total: -16.39 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.49 Total: -33.55 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.18 Total: -6.02 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.90 -6.06 -35.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.100 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds