Wall clock time and date at job start Mon Mar 30 2020 02:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47415 * 2 1 4 4 C 1.35912 * 117.00252 * 179.97438 * 3 2 1 5 5 C 1.38751 * 120.47376 * 0.02562 * 4 3 2 6 6 N 1.31814 * 120.68197 * 179.97438 * 5 4 3 7 7 C 1.31875 * 121.78127 * 0.02562 * 6 5 4 8 8 C 1.38206 * 120.88822 * 0.02562 * 7 6 5 9 9 C 1.38578 * 119.22509 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.81577 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47283 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47269 * 59.99783 * 10 9 8 13 13 C 1.50702 * 109.47028 * 300.00070 * 10 9 8 14 14 H 1.08002 * 119.99822 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00430 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99455 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 120.00316 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.46900 * 60.00440 * 17 15 13 19 19 H 1.48497 * 109.47060 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47464 * 300.00073 * 17 15 13 21 21 H 1.09003 * 109.47186 * 299.99871 * 1 2 3 22 22 H 1.09005 * 109.46977 * 59.99545 * 1 2 3 23 23 H 1.08997 * 109.47220 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47186 * 240.00129 * 2 1 3 25 25 H 1.08997 * 109.47131 * 120.00729 * 2 1 3 26 26 H 1.08003 * 119.65923 * 0.25057 * 5 4 3 27 27 H 1.07996 * 119.55453 * 179.97438 * 7 6 5 28 28 H 1.08001 * 120.38851 * 179.97438 * 8 7 6 29 29 H 1.08998 * 109.47355 * 180.02562 * 12 10 9 30 30 H 1.09004 * 109.46826 * 300.00225 * 12 10 9 31 31 H 1.09000 * 109.46952 * 59.99691 * 12 10 9 32 32 H 0.96997 * 120.00154 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3538 1.5253 0.0005 5 6 4.2080 0.4319 0.0005 6 7 5.5154 0.5999 0.0005 7 6 6.0615 1.8003 0.0011 8 6 5.2757 2.9372 0.0022 9 6 3.8961 2.8062 0.0022 10 6 3.0052 4.0216 0.0039 11 1 1.9616 3.7072 0.0041 12 6 3.2853 4.8611 -1.2442 13 6 3.2814 4.8451 1.2355 14 1 4.0272 4.5205 1.9460 15 6 2.5821 6.0129 1.4552 16 7 1.6743 6.4084 0.5896 17 14 2.9239 7.0332 2.9820 18 1 4.3460 7.4611 2.9832 19 1 2.0470 8.2316 2.9831 20 1 2.6510 6.2184 4.1932 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.7976 -0.5670 -0.0040 27 1 7.1372 1.8961 0.0015 28 1 5.7315 3.9163 0.0030 29 1 2.6412 5.7404 -1.2427 30 1 4.3290 5.1756 -1.2439 31 1 3.0856 4.2655 -2.1350 32 1 1.1825 7.2301 0.7439 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261230835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:12 Heat of formation + Delta-G solvation = -35.917693 kcal Electronic energy + Delta-G solvation = -15004.416233 eV Core-core repulsion = 12543.223954 eV Total energy + Delta-G solvation = -2461.192279 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.55892 -39.03720 -36.73311 -33.90514 -32.61527 -31.14053 -30.29134 -27.23846 -25.62536 -24.31465 -23.12797 -21.68867 -18.99717 -18.46613 -17.53875 -17.08824 -17.02772 -16.30080 -15.30004 -14.92329 -14.68116 -14.48628 -14.32884 -13.54543 -13.46164 -13.42707 -13.01915 -12.83028 -12.82317 -12.37565 -12.32995 -12.08943 -11.77815 -11.72274 -11.09658 -10.48945 -10.27710 -10.11347 -9.22926 -8.10472 -6.24971 0.29475 0.47688 1.41820 1.42837 1.50710 2.33500 2.42229 2.96610 3.17627 3.62404 3.81083 4.02945 4.07263 4.19695 4.28765 4.36977 4.58033 4.70291 4.86243 4.88174 4.92625 4.94763 5.19070 5.20957 5.28002 5.35805 5.59059 5.76272 5.94988 6.02192 6.30313 6.48778 6.82822 7.04559 7.42330 8.94306 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024201 B = 0.009716 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.717554 B = 2881.013782 C = 3505.193756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 O -0.329 6.329 4 C 0.056 3.944 5 C 0.011 3.989 6 N -0.479 5.479 7 C 0.057 3.943 8 C -0.135 4.135 9 C -0.056 4.056 10 C 0.079 3.921 11 H 0.009 0.991 12 C -0.120 4.120 13 C -0.523 4.523 14 H 0.051 0.949 15 C 0.016 3.984 16 N -0.915 5.915 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.276 1.276 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.110 0.890 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.179 0.821 27 H 0.185 0.815 28 H 0.140 0.860 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.019 0.981 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -10.739 -1.466 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.035 4.035 3 O -0.243 6.243 4 C 0.008 3.992 5 C -0.146 4.146 6 N -0.189 5.189 7 C -0.101 4.101 8 C -0.154 4.154 9 C -0.065 4.065 10 C 0.061 3.939 11 H 0.027 0.973 12 C -0.178 4.178 13 C -0.561 4.561 14 H 0.069 0.931 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.781 3.219 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.201 1.201 21 H 0.072 0.928 22 H 0.076 0.924 23 H 0.129 0.871 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.196 0.804 27 H 0.202 0.798 28 H 0.158 0.842 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.419 -11.196 -1.503 11.552 hybrid contribution -0.679 1.407 0.717 1.719 sum 1.740 -9.789 -0.786 9.974 Atomic orbital electron populations 1.21796 0.91730 1.04246 1.02688 1.23132 0.97029 0.80856 1.02439 1.86187 1.18278 1.31239 1.88579 1.20117 0.84175 0.94934 0.99927 1.23077 0.89292 0.98307 1.03928 1.67517 1.12349 1.26791 1.12224 1.22981 1.01478 0.86677 0.98914 1.22025 0.92398 1.01216 0.99795 1.20526 0.95592 0.93796 0.96551 1.17557 0.92781 0.88807 0.94760 0.97308 1.21620 1.00197 1.00659 0.95277 1.21295 1.21448 1.06934 1.06425 0.93067 1.25714 0.94723 0.98572 0.99331 1.70010 1.24875 1.23714 1.36827 0.85650 0.78484 0.77993 0.79784 1.19166 1.20765 1.20132 0.92805 0.92398 0.87103 0.90452 0.90920 0.80378 0.79772 0.84186 0.91931 0.94314 0.96233 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 10.28 71.98 0.74 -2.59 16 2 C 0.04 1.05 5.47 71.98 0.39 1.44 16 3 O -0.33 -13.00 9.04 -92.56 -0.84 -13.84 16 4 C 0.06 2.26 6.69 22.60 0.15 2.41 16 5 C 0.01 0.37 10.22 84.82 0.87 1.24 16 6 N -0.48 -16.52 10.36 -195.44 -2.02 -18.54 16 7 C 0.06 1.88 11.18 84.68 0.95 2.82 16 8 C -0.13 -5.23 8.87 22.34 0.20 -5.04 16 9 C -0.06 -2.53 4.76 -19.58 -0.09 -2.62 16 10 C 0.08 4.17 2.47 -12.28 -0.03 4.14 16 11 H 0.01 0.52 7.11 -2.39 -0.02 0.50 16 12 C -0.12 -5.95 8.79 71.98 0.63 -5.32 16 13 C -0.52 -29.15 8.27 25.60 0.21 -28.94 16 14 H 0.05 2.82 7.62 -2.91 -0.02 2.80 16 15 C 0.02 0.86 5.30 84.66 0.45 1.31 16 16 N -0.92 -53.10 11.32 21.45 0.24 -52.86 16 17 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.08 1.69 7.68 -2.39 -0.02 1.68 16 25 H 0.07 1.67 7.68 -2.39 -0.02 1.65 16 26 H 0.18 4.69 6.32 -2.91 -0.02 4.67 16 27 H 0.19 4.60 8.06 -2.91 -0.02 4.57 16 28 H 0.14 5.27 7.67 -2.91 -0.02 5.25 16 29 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 30 H 0.04 1.78 7.48 -2.39 -0.02 1.77 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -65.14 270.42 4.98 -60.16 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.10 Total: 10.48 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 4.47 Total: -31.14 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -1.78 Total: -71.40 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.84 Total: -13.84 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -65.14 4.98 -60.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261230835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.242 kcal (2) G-P(sol) polarization free energy of solvation -65.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds