Wall clock time and date at job start Mon Mar 30 2020 02:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47040 * 2 1 4 4 C 1.35681 * 116.99918 * 179.97438 * 3 2 1 5 5 N 1.32273 * 119.68254 * 359.97438 * 4 3 2 6 6 C 1.31934 * 121.64673 * 179.97438 * 5 4 3 7 7 C 1.38096 * 120.83446 * 0.02562 * 6 5 4 8 8 C 1.38780 * 119.28189 * 359.97438 * 7 6 5 9 9 C 1.38420 * 118.48942 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.44159 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47255 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47348 * 59.98067 * 10 9 8 13 13 C 1.50698 * 109.47379 * 299.97840 * 10 9 8 14 14 H 1.07992 * 119.99926 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00003 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99964 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00079 * 179.97438 * 15 13 10 18 18 H 1.48508 * 109.46748 * 90.00354 * 17 15 13 19 19 H 1.48494 * 109.47424 * 209.99855 * 17 15 13 20 20 H 1.48504 * 109.47150 * 330.00571 * 17 15 13 21 21 H 1.09005 * 109.46876 * 300.00100 * 1 2 3 22 22 H 1.08998 * 109.47122 * 60.00164 * 1 2 3 23 23 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47559 * 240.00159 * 2 1 3 25 25 H 1.08998 * 109.47122 * 119.99836 * 2 1 3 26 26 H 1.08007 * 119.58383 * 179.72291 * 6 5 4 27 27 H 1.07997 * 120.35454 * 179.97438 * 7 6 5 28 28 H 1.08008 * 120.75147 * 180.02562 * 8 7 6 29 29 H 1.08991 * 109.47563 * 179.97438 * 12 10 9 30 30 H 1.09001 * 109.46715 * 300.00059 * 12 10 9 31 31 H 1.09003 * 109.47201 * 59.99543 * 12 10 9 32 32 H 0.97006 * 119.99761 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 7 4.1514 0.4717 0.0015 6 6 5.4645 0.5996 0.0016 7 6 6.0540 1.8484 0.0011 8 6 5.2491 2.9790 0.0000 9 6 3.8751 2.8113 0.0000 10 6 2.9598 4.0084 -0.0017 11 1 1.9227 3.6729 -0.0019 12 6 3.2235 4.8503 -1.2518 13 6 3.2184 4.8403 1.2279 14 1 3.9706 4.5331 1.9393 15 6 2.4954 5.9942 1.4442 16 7 1.5797 6.3686 0.5777 17 14 2.8154 7.0251 2.9688 18 1 3.8645 8.0337 2.6730 19 1 1.5640 7.7160 3.3709 20 1 3.2724 6.1452 4.0744 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 6.0863 -0.2835 0.0070 27 1 7.1297 1.9441 0.0016 28 1 5.6850 3.9672 -0.0008 29 1 2.5612 5.7160 -1.2533 30 1 4.2606 5.1859 -1.2516 31 1 3.0365 4.2486 -2.1412 32 1 1.0707 7.1802 0.7300 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261238242.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:47 Heat of formation + Delta-G solvation = -16.840146 kcal Electronic energy + Delta-G solvation = -15019.554077 eV Core-core repulsion = 12559.189062 eV Total energy + Delta-G solvation = -2460.365015 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.01661 -37.38570 -34.75593 -31.90666 -31.62223 -30.11787 -28.14341 -25.11358 -23.94784 -22.72560 -21.76446 -19.81837 -17.86581 -16.49495 -15.95577 -15.68307 -14.99107 -14.47136 -13.65771 -13.47248 -13.31698 -12.68206 -12.58186 -12.19179 -11.92777 -11.61519 -11.42473 -11.12772 -10.90787 -10.83690 -10.47914 -10.34032 -10.12595 -9.82307 -9.14467 -8.86283 -8.73666 -8.34336 -7.57045 -5.98451 -4.05169 1.87471 1.98142 3.30399 3.37328 3.41168 3.65258 4.39474 4.52019 4.87100 5.31276 5.32118 5.38579 5.49582 5.62262 5.67226 5.80973 5.89490 6.09198 6.12616 6.30959 6.45386 6.63737 6.82658 6.98935 7.04862 7.18915 7.34902 7.73085 7.91891 8.02785 8.11127 8.39707 8.47695 8.96946 9.58598 11.07152 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024314 B = 0.009792 C = 0.008045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.314956 B = 2858.898634 C = 3479.712800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 O -0.294 6.294 4 C 0.304 3.696 5 N -0.548 5.548 6 C 0.100 3.900 7 C -0.213 4.213 8 C -0.047 4.047 9 C -0.092 4.092 10 C 0.079 3.921 11 H 0.048 0.952 12 C -0.130 4.130 13 C -0.507 4.507 14 H 0.055 0.945 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.146 0.854 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.026 0.974 31 H 0.007 0.993 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.318 -9.304 -1.913 10.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 O -0.201 6.201 4 C 0.126 3.874 5 N -0.272 5.272 6 C -0.055 4.055 7 C -0.234 4.234 8 C -0.072 4.072 9 C -0.095 4.095 10 C 0.060 3.940 11 H 0.066 0.934 12 C -0.188 4.188 13 C -0.545 4.545 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.163 0.837 27 H 0.143 0.857 28 H 0.156 0.844 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.026 0.974 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.569 -9.811 -1.940 10.326 hybrid contribution 0.681 1.135 0.878 1.588 sum 3.250 -8.675 -1.063 9.325 Atomic orbital electron populations 1.21792 0.93572 1.02030 1.03562 1.22447 0.94468 0.82384 1.01550 1.86364 1.17062 1.28756 1.87938 1.19734 0.83646 0.89784 0.94264 1.67166 1.06548 1.33604 1.19864 1.22035 0.89290 0.96749 0.97392 1.21885 1.00595 0.93713 1.07183 1.21350 0.92389 0.99059 0.94437 1.20787 0.95469 0.94284 0.98976 1.17758 0.93845 0.87647 0.94755 0.93403 1.21793 1.00303 1.01554 0.95171 1.21091 1.20501 1.07077 1.05815 0.92684 1.24940 0.94979 0.97484 0.96462 1.69891 1.23266 1.24215 1.35263 0.86595 0.77629 0.80370 0.83432 1.20670 1.21196 1.19960 0.91559 0.91701 0.91001 0.92445 0.92354 0.83684 0.85704 0.84418 0.89466 0.95443 0.97384 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 37.16 0.38 -1.66 16 2 C 0.07 1.10 6.03 37.16 0.22 1.33 16 3 O -0.29 -6.25 8.90 -18.75 -0.17 -6.42 16 4 C 0.30 6.60 7.47 -17.13 -0.13 6.47 16 5 N -0.55 -10.59 9.22 -13.33 -0.12 -10.71 16 6 C 0.10 1.66 11.18 -17.56 -0.20 1.46 16 7 C -0.21 -3.51 10.11 -39.43 -0.40 -3.91 16 8 C -0.05 -0.93 8.87 -39.31 -0.35 -1.28 16 9 C -0.09 -2.10 4.75 -104.32 -0.50 -2.59 16 10 C 0.08 2.03 2.45 -92.92 -0.23 1.80 16 11 H 0.05 1.36 7.02 -51.93 -0.36 0.99 16 12 C -0.13 -3.19 8.79 37.16 0.33 -2.86 16 13 C -0.51 -13.94 8.26 -34.44 -0.28 -14.22 16 14 H 0.05 1.51 7.61 -52.49 -0.40 1.11 16 15 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -25.31 11.32 55.43 0.63 -24.69 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 25 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 26 H 0.15 1.84 8.06 -52.48 -0.42 1.42 16 27 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 28 H 0.14 2.63 7.66 -52.48 -0.40 2.23 16 29 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 30 H 0.03 0.62 7.46 -51.93 -0.39 0.23 16 31 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 272.80 15.07 4.11 4.11 Total: -1.00 -29.88 272.80 -6.19 -36.07 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.38 Total: -0.82 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -1.24 Total: -13.83 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.50 Total: -35.40 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.17 Total: -6.42 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.88 -6.19 -36.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261238242.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.234 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds