Wall clock time and date at job start Mon Mar 30 2020 02:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47040 * 2 1 4 4 C 1.35681 * 116.99918 * 179.97438 * 3 2 1 5 5 N 1.32273 * 119.68254 * 359.97438 * 4 3 2 6 6 C 1.31934 * 121.64673 * 179.97438 * 5 4 3 7 7 C 1.38096 * 120.83446 * 0.02562 * 6 5 4 8 8 C 1.38780 * 119.28189 * 359.97438 * 7 6 5 9 9 C 1.38420 * 118.48942 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.44159 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47255 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47348 * 59.98067 * 10 9 8 13 13 C 1.50698 * 109.47379 * 299.97840 * 10 9 8 14 14 H 1.07992 * 119.99926 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00003 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99964 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00079 * 179.97438 * 15 13 10 18 18 H 1.48508 * 109.46748 * 90.00354 * 17 15 13 19 19 H 1.48494 * 109.47424 * 209.99855 * 17 15 13 20 20 H 1.48504 * 109.47150 * 330.00571 * 17 15 13 21 21 H 1.09005 * 109.46876 * 300.00100 * 1 2 3 22 22 H 1.08998 * 109.47122 * 60.00164 * 1 2 3 23 23 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47559 * 240.00159 * 2 1 3 25 25 H 1.08998 * 109.47122 * 119.99836 * 2 1 3 26 26 H 1.08007 * 119.58383 * 179.72291 * 6 5 4 27 27 H 1.07997 * 120.35454 * 179.97438 * 7 6 5 28 28 H 1.08008 * 120.75147 * 180.02562 * 8 7 6 29 29 H 1.08991 * 109.47563 * 179.97438 * 12 10 9 30 30 H 1.09001 * 109.46715 * 300.00059 * 12 10 9 31 31 H 1.09003 * 109.47201 * 59.99543 * 12 10 9 32 32 H 0.97006 * 119.99761 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 7 4.1514 0.4717 0.0015 6 6 5.4645 0.5996 0.0016 7 6 6.0540 1.8484 0.0011 8 6 5.2491 2.9790 0.0000 9 6 3.8751 2.8113 0.0000 10 6 2.9598 4.0084 -0.0017 11 1 1.9227 3.6729 -0.0019 12 6 3.2235 4.8503 -1.2518 13 6 3.2184 4.8403 1.2279 14 1 3.9706 4.5331 1.9393 15 6 2.4954 5.9942 1.4442 16 7 1.5797 6.3686 0.5777 17 14 2.8154 7.0251 2.9688 18 1 3.8645 8.0337 2.6730 19 1 1.5640 7.7160 3.3709 20 1 3.2724 6.1452 4.0744 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 6.0863 -0.2835 0.0070 27 1 7.1297 1.9441 0.0016 28 1 5.6850 3.9672 -0.0008 29 1 2.5612 5.7160 -1.2533 30 1 4.2606 5.1859 -1.2516 31 1 3.0365 4.2486 -2.1412 32 1 1.0707 7.1802 0.7300 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261238242.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:46 Heat of formation + Delta-G solvation = -35.943443 kcal Electronic energy + Delta-G solvation = -15020.382458 eV Core-core repulsion = 12559.189062 eV Total energy + Delta-G solvation = -2461.193396 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.50382 -38.84556 -36.63175 -33.78164 -32.90105 -31.66956 -29.78859 -27.21555 -25.39857 -24.26697 -23.13649 -21.62873 -19.31880 -18.38440 -17.59012 -17.12054 -16.81149 -16.00113 -15.24743 -14.92077 -14.76302 -14.48671 -14.13573 -13.51904 -13.33372 -13.23267 -13.11229 -12.80683 -12.79925 -12.42351 -12.34144 -12.12808 -11.66649 -11.61872 -11.08276 -10.46495 -10.41516 -10.34559 -9.10678 -8.08099 -6.22739 0.42314 0.48713 1.41306 1.42247 1.52470 2.27183 2.43245 3.00437 3.19477 3.52159 4.10366 4.12397 4.22052 4.29780 4.35451 4.46928 4.53520 4.78025 4.87559 4.90921 4.95316 5.14572 5.18886 5.23480 5.29600 5.44512 5.61345 5.76499 5.98312 6.05315 6.33343 6.51249 6.84545 7.02770 7.44469 8.96472 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024314 B = 0.009792 C = 0.008045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.314956 B = 2858.898634 C = 3479.712800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 O -0.325 6.325 4 C 0.285 3.715 5 N -0.552 5.552 6 C 0.108 3.892 7 C -0.199 4.199 8 C -0.053 4.053 9 C -0.133 4.133 10 C 0.083 3.917 11 H 0.006 0.994 12 C -0.119 4.119 13 C -0.520 4.520 14 H 0.050 0.950 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 0.956 3.044 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.272 1.272 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.109 0.891 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.194 0.806 27 H 0.170 0.830 28 H 0.138 0.862 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.017 0.983 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 -10.577 -1.439 11.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 O -0.234 6.234 4 C 0.107 3.893 5 N -0.276 5.276 6 C -0.047 4.047 7 C -0.218 4.218 8 C -0.078 4.078 9 C -0.135 4.135 10 C 0.064 3.936 11 H 0.024 0.976 12 C -0.176 4.176 13 C -0.558 4.558 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.781 3.219 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.197 1.197 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.127 0.873 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.211 0.789 27 H 0.188 0.812 28 H 0.156 0.844 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.505 -11.091 -1.471 12.061 hybrid contribution 0.142 1.414 0.703 1.585 sum 4.647 -9.677 -0.768 10.762 Atomic orbital electron populations 1.21826 0.91601 1.04175 1.02746 1.22731 0.96051 0.80610 1.01908 1.86334 1.17461 1.31489 1.88074 1.19813 0.84127 0.90078 0.95238 1.67283 1.07772 1.32530 1.20030 1.22942 0.88650 0.98682 0.94469 1.22299 1.02487 0.92287 1.04763 1.21501 0.91525 1.00545 0.94234 1.20594 0.96408 0.93629 1.02905 1.17496 0.92500 0.89028 0.94570 0.97605 1.21618 1.00157 1.00493 0.95375 1.21351 1.20405 1.07569 1.06514 0.93139 1.25732 0.94766 0.98672 0.99320 1.70029 1.24018 1.24627 1.36870 0.85592 0.77676 0.78800 0.79805 1.19524 1.20949 1.19707 0.92634 0.92224 0.87286 0.91707 0.92154 0.78904 0.81215 0.84408 0.92064 0.94351 0.96430 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 10.28 71.98 0.74 -3.13 16 2 C 0.06 2.03 6.03 71.98 0.43 2.46 16 3 O -0.33 -14.30 8.90 -89.99 -0.80 -15.11 16 4 C 0.28 12.43 7.47 84.78 0.63 13.07 16 5 N -0.55 -20.35 9.22 -308.93 -2.85 -23.20 16 6 C 0.11 3.15 11.18 84.64 0.95 4.09 16 7 C -0.20 -5.78 10.11 22.37 0.23 -5.56 16 8 C -0.05 -2.01 8.87 22.44 0.20 -1.81 16 9 C -0.13 -6.09 4.75 -19.67 -0.09 -6.19 16 10 C 0.08 4.45 2.45 -12.29 -0.03 4.42 16 11 H 0.01 0.35 7.02 -2.39 -0.02 0.33 16 12 C -0.12 -5.99 8.79 71.98 0.63 -5.35 16 13 C -0.52 -29.34 8.26 25.60 0.21 -29.13 16 14 H 0.05 2.81 7.61 -2.91 -0.02 2.79 16 15 C 0.01 0.77 5.30 84.65 0.45 1.22 16 16 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 17 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.06 1.97 8.10 -2.39 -0.02 1.96 16 25 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 26 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 27 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 28 H 0.14 5.12 7.66 -2.91 -0.02 5.10 16 29 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 30 H 0.04 1.78 7.46 -2.39 -0.02 1.76 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 Total: -1.00 -66.70 272.80 4.06 -62.64 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.09 Total: 8.98 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 4.35 Total: -25.91 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -2.60 Total: -76.72 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.80 Total: -15.11 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -66.70 4.06 -62.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261238242.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.695 kcal (2) G-P(sol) polarization free energy of solvation -66.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds