Wall clock time and date at job start Mon Mar 30 2020 02:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00367 * 2 1 4 4 H 1.48503 * 109.46858 * 239.99604 * 3 2 1 5 5 H 1.48491 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46994 * 120.00081 * 3 2 1 7 7 C 1.37887 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99645 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00045 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47173 * 59.99701 * 9 7 2 11 11 N 1.46908 * 109.47246 * 300.00226 * 9 7 2 12 12 C 1.50698 * 109.47237 * 180.02562 * 9 7 2 13 13 C 1.40060 * 125.87838 * 124.99787 * 12 9 7 14 14 C 1.34747 * 107.80280 * 179.97438 * 13 12 9 15 15 N 1.35295 * 107.90647 * 0.04281 * 14 13 12 16 16 N 1.31028 * 125.86861 * 305.29953 * 12 9 7 17 17 C 1.46596 * 124.53990 * 179.91439 * 15 14 13 18 18 C 1.53233 * 108.79742 * 342.72057 * 17 15 14 19 19 C 1.53150 * 109.55949 * 50.57466 * 18 17 15 20 20 C 1.50865 * 127.76649 * 180.08974 * 14 13 12 21 21 H 0.97006 * 119.99573 * 0.02562 * 1 2 3 22 22 H 1.00906 * 110.99652 * 300.00026 * 11 9 7 23 23 H 1.00901 * 111.00025 * 63.95427 * 11 9 7 24 24 H 1.08007 * 126.09456 * 0.02562 * 13 12 9 25 25 H 1.08999 * 109.58095 * 102.51488 * 17 15 14 26 26 H 1.09001 * 109.58247 * 222.78887 * 17 15 14 27 27 H 1.09002 * 109.45647 * 170.59706 * 18 17 15 28 28 H 1.08998 * 109.45761 * 290.54482 * 18 17 15 29 29 H 1.08996 * 109.51986 * 50.47589 * 19 18 17 30 30 H 1.09000 * 109.51773 * 170.65236 * 19 18 17 31 31 H 1.09002 * 109.72243 * 44.51202 * 20 14 13 32 32 H 1.08993 * 109.72067 * 283.85232 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6238 -2.5567 -0.8902 11 7 0.4067 -2.5772 1.1992 12 6 2.2300 -3.6447 -0.0005 13 6 2.2686 -4.6916 0.9291 14 6 3.2828 -5.5098 0.5863 15 7 3.8705 -5.0023 -0.5217 16 7 3.1953 -3.8296 -0.8671 17 6 5.0183 -5.6065 -1.2046 18 6 5.6891 -6.6042 -0.2545 19 6 4.6339 -7.5539 0.3200 20 6 3.7234 -6.7756 1.2790 21 1 -0.4850 0.8401 -0.0004 22 1 0.9651 -2.5260 2.0382 23 1 -0.3006 -1.8577 1.1911 24 1 1.6034 -4.8205 1.7702 25 1 4.6783 -6.1267 -2.1000 26 1 5.7295 -4.8283 -1.4820 27 1 6.4365 -7.1796 -0.8008 28 1 6.1716 -6.0626 0.5591 29 1 4.0372 -7.9694 -0.4920 30 1 5.1269 -8.3616 0.8610 31 1 2.8517 -7.3798 1.5303 32 1 4.2728 -6.5260 2.1866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261253065.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:18 Heat of formation + Delta-G solvation = 61.278418 kcal Electronic energy + Delta-G solvation = -14942.339945 eV Core-core repulsion = 12517.655156 eV Total energy + Delta-G solvation = -2424.684788 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73335 -36.43762 -34.30411 -32.08798 -31.13727 -29.39442 -27.34569 -25.94220 -23.96060 -22.52874 -21.50698 -18.92671 -18.19334 -16.42220 -16.00891 -15.29046 -14.76489 -14.24814 -14.04564 -14.00606 -13.46184 -12.97390 -12.65853 -12.42192 -12.05066 -11.58523 -11.13524 -11.07417 -10.95932 -10.92783 -10.79307 -10.66195 -9.97453 -9.80709 -9.44290 -8.62093 -8.10194 -7.66413 -7.12788 -5.99721 -4.12795 2.64092 3.17595 3.31837 3.35444 3.39684 3.83719 4.43662 4.56389 4.66597 4.75320 4.97520 5.22869 5.32979 5.43590 5.51159 5.61649 5.75178 5.79552 5.87263 6.01648 6.11608 6.51497 6.62699 6.70813 7.04848 7.54481 7.71487 7.79989 7.87269 8.19678 8.62535 8.90402 9.05126 9.21429 9.57047 10.99320 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046198 B = 0.007247 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.936458 B = 3862.673626 C = 4242.698962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.063 3.937 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.532 4.532 8 H 0.056 0.944 9 C 0.282 3.718 10 H 0.054 0.946 11 N -0.846 5.846 12 C 0.120 3.880 13 C -0.248 4.248 14 C 0.053 3.947 15 N -0.390 5.390 16 N -0.296 5.296 17 C 0.139 3.861 18 C -0.134 4.134 19 C -0.124 4.124 20 C -0.053 4.053 21 H 0.265 0.735 22 H 0.314 0.686 23 H 0.358 0.642 24 H 0.144 0.856 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.534 -13.133 1.948 15.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.138 4.138 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.074 0.926 9 C 0.170 3.830 10 H 0.072 0.928 11 N -0.377 5.377 12 C -0.047 4.047 13 C -0.277 4.277 14 C -0.073 4.073 15 N -0.174 5.174 16 N -0.117 5.117 17 C 0.017 3.983 18 C -0.172 4.172 19 C -0.161 4.161 20 C -0.091 4.091 21 H 0.075 0.925 22 H 0.123 0.877 23 H 0.175 0.825 24 H 0.161 0.839 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.859 -13.342 0.519 16.024 hybrid contribution 0.551 1.661 0.812 1.929 sum 9.411 -11.681 1.332 15.059 Atomic orbital electron populations 1.69732 1.05762 1.27177 1.51084 1.25002 0.94955 0.99244 0.94620 0.86545 0.79512 0.82618 0.78655 1.20231 1.21224 1.20373 1.21785 0.93706 0.90894 1.50874 0.92575 1.17296 0.87754 0.86187 0.91789 0.92846 1.59322 1.18405 1.56057 1.03868 1.23138 0.94143 0.96139 0.91317 1.20962 1.03003 0.98121 1.05645 1.20856 0.96948 0.97764 0.91736 1.48618 1.26428 1.19959 1.22385 1.77367 1.10242 0.99326 1.24768 1.21509 0.86043 0.95769 0.94995 1.21911 0.98328 0.97306 0.99701 1.21647 0.97198 0.97813 0.99480 1.20320 0.99724 0.91713 0.97391 0.92503 0.87723 0.82543 0.83859 0.90948 0.89798 0.89772 0.90892 0.91419 0.90883 0.89670 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 11.54 55.43 0.64 -24.84 16 2 C 0.06 1.78 5.38 -17.82 -0.10 1.69 16 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.53 -15.28 8.68 -34.44 -0.30 -15.58 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 9 C 0.28 7.58 3.26 -70.02 -0.23 7.35 16 10 H 0.05 1.59 8.14 -51.93 -0.42 1.16 16 11 N -0.85 -20.83 8.53 -6.65 -0.06 -20.89 16 12 C 0.12 2.95 6.37 -82.25 -0.52 2.43 16 13 C -0.25 -5.22 9.90 -40.14 -0.40 -5.62 16 14 C 0.05 0.95 6.59 -82.22 -0.54 0.41 16 15 N -0.39 -7.49 4.04 -56.95 -0.23 -7.72 16 16 N -0.30 -7.17 12.58 33.74 0.42 -6.74 16 17 C 0.14 1.92 7.28 -3.87 -0.03 1.89 16 18 C -0.13 -1.35 5.93 -26.53 -0.16 -1.51 16 19 C -0.12 -1.22 5.97 -26.42 -0.16 -1.38 16 20 C -0.05 -0.65 6.29 -27.57 -0.17 -0.82 16 21 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 22 H 0.31 7.40 8.78 -39.29 -0.34 7.06 16 23 H 0.36 9.30 7.08 -39.29 -0.28 9.02 16 24 H 0.14 2.83 7.85 -52.48 -0.41 2.41 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 29 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 266.17 15.07 4.01 4.01 Total: -1.00 -31.50 266.17 -7.21 -38.71 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -4.38 Total: 11.72 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.60 Total: -11.15 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 0.78 Total: -60.20 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.50 -7.21 -38.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253065.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.988 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds