Wall clock time and date at job start Mon Mar 30 2020 02:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00367 * 2 1 4 4 H 1.48503 * 109.46858 * 239.99604 * 3 2 1 5 5 H 1.48491 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46994 * 120.00081 * 3 2 1 7 7 C 1.37887 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99645 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00045 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47173 * 59.99701 * 9 7 2 11 11 N 1.46908 * 109.47246 * 300.00226 * 9 7 2 12 12 C 1.50698 * 109.47237 * 180.02562 * 9 7 2 13 13 C 1.40060 * 125.87838 * 124.99787 * 12 9 7 14 14 C 1.34747 * 107.80280 * 179.97438 * 13 12 9 15 15 N 1.35295 * 107.90647 * 0.04281 * 14 13 12 16 16 N 1.31028 * 125.86861 * 305.29953 * 12 9 7 17 17 C 1.46596 * 124.53990 * 179.91439 * 15 14 13 18 18 C 1.53233 * 108.79742 * 342.72057 * 17 15 14 19 19 C 1.53150 * 109.55949 * 50.57466 * 18 17 15 20 20 C 1.50865 * 127.76649 * 180.08974 * 14 13 12 21 21 H 0.97006 * 119.99573 * 0.02562 * 1 2 3 22 22 H 1.00906 * 110.99652 * 300.00026 * 11 9 7 23 23 H 1.00901 * 111.00025 * 63.95427 * 11 9 7 24 24 H 1.08007 * 126.09456 * 0.02562 * 13 12 9 25 25 H 1.08999 * 109.58095 * 102.51488 * 17 15 14 26 26 H 1.09001 * 109.58247 * 222.78887 * 17 15 14 27 27 H 1.09002 * 109.45647 * 170.59706 * 18 17 15 28 28 H 1.08998 * 109.45761 * 290.54482 * 18 17 15 29 29 H 1.08996 * 109.51986 * 50.47589 * 19 18 17 30 30 H 1.09000 * 109.51773 * 170.65236 * 19 18 17 31 31 H 1.09002 * 109.72243 * 44.51202 * 20 14 13 32 32 H 1.08993 * 109.72067 * 283.85232 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6238 -2.5567 -0.8902 11 7 0.4067 -2.5772 1.1992 12 6 2.2300 -3.6447 -0.0005 13 6 2.2686 -4.6916 0.9291 14 6 3.2828 -5.5098 0.5863 15 7 3.8705 -5.0023 -0.5217 16 7 3.1953 -3.8296 -0.8671 17 6 5.0183 -5.6065 -1.2046 18 6 5.6891 -6.6042 -0.2545 19 6 4.6339 -7.5539 0.3200 20 6 3.7234 -6.7756 1.2790 21 1 -0.4850 0.8401 -0.0004 22 1 0.9651 -2.5260 2.0382 23 1 -0.3006 -1.8577 1.1911 24 1 1.6034 -4.8205 1.7702 25 1 4.6783 -6.1267 -2.1000 26 1 5.7295 -4.8283 -1.4820 27 1 6.4365 -7.1796 -0.8008 28 1 6.1716 -6.0626 0.5591 29 1 4.0372 -7.9694 -0.4920 30 1 5.1269 -8.3616 0.8610 31 1 2.8517 -7.3798 1.5303 32 1 4.2728 -6.5260 2.1866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261253065.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:18 Heat of formation + Delta-G solvation = 38.489983 kcal Electronic energy + Delta-G solvation = -14943.328125 eV Core-core repulsion = 12517.655156 eV Total energy + Delta-G solvation = -2425.672969 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.24551 -37.74349 -36.16757 -33.55732 -32.95584 -30.92050 -28.71641 -28.01711 -25.30051 -24.22531 -22.69908 -20.54952 -19.58461 -18.57961 -17.40804 -16.80559 -16.43381 -16.07943 -15.20175 -14.96695 -14.81408 -14.57910 -14.27910 -14.09580 -13.65770 -13.32262 -12.88715 -12.77938 -12.52553 -12.02716 -11.96025 -11.89448 -11.82751 -11.65653 -11.15065 -10.75985 -9.77360 -9.25553 -9.20497 -8.14272 -6.37829 1.11875 1.35280 1.36951 1.45782 1.81797 2.07564 2.38811 3.03382 3.58852 3.75374 3.87268 3.92252 4.16079 4.36947 4.49256 4.60893 4.68635 4.87798 4.88904 4.92272 5.03204 5.06703 5.15731 5.27400 5.33482 5.59476 5.64207 5.87280 6.07082 6.41038 6.59293 6.84963 7.10895 7.16007 7.37767 8.81879 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046198 B = 0.007247 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.936458 B = 3862.673626 C = 4242.698962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.022 3.978 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.554 4.554 8 H 0.037 0.963 9 C 0.286 3.714 10 H 0.010 0.990 11 N -0.830 5.830 12 C 0.090 3.910 13 C -0.279 4.279 14 C 0.075 3.925 15 N -0.385 5.385 16 N -0.346 5.346 17 C 0.121 3.879 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.053 4.053 21 H 0.270 0.730 22 H 0.321 0.679 23 H 0.349 0.651 24 H 0.149 0.851 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.122 0.878 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.447 -14.855 2.778 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.788 3.212 4 H -0.205 1.205 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.594 4.594 8 H 0.055 0.945 9 C 0.174 3.826 10 H 0.028 0.972 11 N -0.359 5.359 12 C -0.076 4.076 13 C -0.309 4.309 14 C -0.053 4.053 15 N -0.169 5.169 16 N -0.168 5.168 17 C 0.001 3.999 18 C -0.163 4.163 19 C -0.157 4.157 20 C -0.092 4.092 21 H 0.079 0.921 22 H 0.130 0.870 23 H 0.165 0.835 24 H 0.167 0.833 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.140 0.860 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.777 -15.074 1.347 18.579 hybrid contribution 0.008 2.106 0.501 2.165 sum 10.785 -12.968 1.848 16.968 Atomic orbital electron populations 1.69822 1.06742 1.28216 1.50651 1.25735 0.95889 1.02274 0.93895 0.85552 0.78418 0.78757 0.78489 1.20534 1.19769 1.19737 1.21877 0.92883 0.92445 1.52222 0.94469 1.16983 0.87740 0.87189 0.90711 0.97185 1.59247 1.17825 1.55302 1.03528 1.22843 0.94647 0.96797 0.93317 1.21086 1.05205 0.98443 1.06117 1.21674 0.94741 0.98490 0.90369 1.49015 1.26781 1.18410 1.22662 1.77188 1.11266 1.02400 1.25957 1.22087 0.84613 0.96654 0.96576 1.21961 0.98748 0.96502 0.99119 1.21691 0.96665 0.98156 0.99175 1.20616 1.01325 0.89160 0.98091 0.92054 0.86986 0.83542 0.83284 0.89641 0.89969 0.85957 0.91079 0.91560 0.87105 0.87934 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.95 11.54 21.45 0.25 -52.70 16 2 C 0.02 1.27 5.38 84.66 0.46 1.73 16 3 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 4 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.55 -33.14 8.68 25.60 0.22 -32.92 16 8 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 9 C 0.29 16.23 3.26 43.42 0.14 16.37 16 10 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 11 N -0.83 -42.49 8.53 -174.95 -1.49 -43.98 16 12 C 0.09 4.61 6.37 43.12 0.27 4.88 16 13 C -0.28 -11.92 9.90 21.91 0.22 -11.70 16 14 C 0.08 2.61 6.59 41.28 0.27 2.88 16 15 N -0.38 -14.59 4.04 -334.11 -1.35 -15.93 16 16 N -0.35 -17.32 12.58 -47.18 -0.59 -17.91 16 17 C 0.12 3.10 7.28 86.44 0.63 3.73 16 18 C -0.13 -1.99 5.93 30.72 0.18 -1.81 16 19 C -0.12 -1.77 5.97 30.79 0.18 -1.58 16 20 C -0.05 -1.12 6.29 30.05 0.19 -0.93 16 21 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 22 H 0.32 15.60 8.78 -89.69 -0.79 14.81 16 23 H 0.35 18.81 7.08 -89.69 -0.63 18.17 16 24 H 0.15 5.95 7.85 -2.91 -0.02 5.93 16 25 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 29 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 30 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -71.91 266.17 1.31 -70.60 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -0.29 Total: 31.71 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 2.77 Total: -19.35 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -3.19 Total: -130.53 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.91 1.31 -70.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253065.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.087 kcal (2) G-P(sol) polarization free energy of solvation -71.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds