Wall clock time and date at job start Mon Mar 30 2020 03:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00217 * 2 1 4 4 H 1.48504 * 109.47000 * 239.99766 * 3 2 1 5 5 H 1.48501 * 109.46993 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47459 * 119.99262 * 3 2 1 7 7 C 1.37876 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00436 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99848 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47064 * 59.99532 * 9 7 2 11 11 N 1.46900 * 109.47012 * 299.99987 * 9 7 2 12 12 C 1.50695 * 109.47134 * 179.97438 * 9 7 2 13 13 C 1.34855 * 125.96682 * 124.99944 * 12 9 7 14 14 N 1.36312 * 106.69074 * 179.97438 * 13 12 9 15 15 C 1.35419 * 107.39953 * 0.05273 * 14 13 12 16 16 N 1.30088 * 108.62884 * 0.16680 * 15 14 13 17 17 C 1.51046 * 123.98101 * 179.90875 * 15 14 13 18 18 C 1.53397 * 108.21084 * 344.04703 * 17 15 14 19 19 C 1.53143 * 109.24211 * 48.81984 * 18 17 15 20 20 C 1.46475 * 127.77561 * 180.08532 * 14 13 12 21 21 H 0.97002 * 120.00101 * 0.02562 * 1 2 3 22 22 H 1.00908 * 110.99571 * 299.99542 * 11 9 7 23 23 H 1.00895 * 111.00437 * 63.95098 * 11 9 7 24 24 H 1.08003 * 126.64944 * 0.02562 * 13 12 9 25 25 H 1.09005 * 109.71250 * 103.72437 * 17 15 14 26 26 H 1.08999 * 109.71418 * 224.31919 * 17 15 14 27 27 H 1.09000 * 109.50711 * 168.75302 * 18 17 15 28 28 H 1.09004 * 109.50713 * 288.88756 * 18 17 15 29 29 H 1.08999 * 109.46861 * 50.52853 * 19 18 17 30 30 H 1.09004 * 109.46937 * 170.51068 * 19 18 17 31 31 H 1.08999 * 109.58502 * 43.04099 * 20 14 13 32 32 H 1.09005 * 109.57742 * 282.63020 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8896 11 7 0.4060 -2.5767 1.1997 12 6 2.2302 -3.6446 0.0005 13 6 2.2690 -4.6534 0.8946 14 7 3.3010 -5.4640 0.5257 15 6 3.8628 -4.9254 -0.5826 16 7 3.2197 -3.8364 -0.8870 17 6 5.0451 -5.5252 -1.3063 18 6 5.7076 -6.5492 -0.3760 19 6 4.6340 -7.4782 0.1982 20 6 3.7512 -6.6963 1.1771 21 1 -0.4850 0.8401 -0.0004 22 1 0.9638 -2.5252 2.0390 23 1 -0.3013 -1.8572 1.1908 24 1 1.6098 -4.7925 1.7387 25 1 4.7064 -6.0204 -2.2165 26 1 5.7585 -4.7407 -1.5584 27 1 6.4337 -7.1359 -0.9387 28 1 6.2118 -6.0285 0.4382 29 1 4.0194 -7.8683 -0.6131 30 1 5.1121 -8.3060 0.7219 31 1 2.8870 -7.3006 1.4527 32 1 4.3259 -6.4486 2.0696 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254481.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:15 Heat of formation + Delta-G solvation = 48.108545 kcal Electronic energy + Delta-G solvation = -14986.787159 eV Core-core repulsion = 12561.531282 eV Total energy + Delta-G solvation = -2425.255877 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.53999 -36.52121 -34.28174 -32.71982 -31.16804 -29.09229 -27.53252 -25.89806 -23.98552 -22.20312 -21.83836 -18.89708 -18.55030 -16.48296 -16.27790 -15.44585 -14.77786 -14.23663 -14.09084 -13.81518 -13.41594 -13.27822 -13.01946 -12.53042 -11.89852 -11.64391 -11.14662 -11.07786 -10.99996 -10.92339 -10.77543 -10.68403 -9.91095 -9.69634 -8.92787 -8.74824 -8.45301 -7.33090 -7.06123 -5.91150 -4.02880 2.81789 3.36031 3.36739 3.39812 3.44916 4.09654 4.50299 4.51839 4.62616 4.71810 4.85291 5.23343 5.31163 5.36802 5.46079 5.60697 5.72381 5.76614 5.81068 6.00770 6.12545 6.32661 6.68285 6.87156 7.13040 7.57594 7.89324 7.94509 7.98139 8.31658 8.78711 9.07226 9.19217 9.24348 9.65912 11.07861 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045842 B = 0.007349 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.643111 B = 3809.031218 C = 4199.125543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.283 3.717 10 H 0.048 0.952 11 N -0.850 5.850 12 C 0.055 3.945 13 C -0.067 4.067 14 N -0.468 5.468 15 C 0.178 3.822 16 N -0.474 5.474 17 C -0.028 4.028 18 C -0.123 4.123 19 C -0.133 4.133 20 C 0.108 3.892 21 H 0.263 0.737 22 H 0.310 0.690 23 H 0.358 0.642 24 H 0.171 0.829 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.690 -14.050 2.316 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.563 4.563 8 H 0.074 0.926 9 C 0.172 3.828 10 H 0.066 0.934 11 N -0.380 5.380 12 C -0.074 4.074 13 C -0.196 4.196 14 N -0.155 5.155 15 C -0.084 4.084 16 N -0.193 5.193 17 C -0.067 4.067 18 C -0.161 4.161 19 C -0.170 4.170 20 C -0.015 4.015 21 H 0.073 0.927 22 H 0.119 0.881 23 H 0.174 0.826 24 H 0.188 0.812 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.498 -14.258 1.457 16.662 hybrid contribution 0.619 1.419 0.983 1.834 sum 9.117 -12.840 2.440 15.935 Atomic orbital electron populations 1.69731 1.05742 1.26939 1.51835 1.25011 0.94929 0.99157 0.94967 0.86580 0.79506 0.82820 0.78596 1.20232 1.21367 1.20518 1.21795 0.93768 0.90956 1.49761 0.92614 1.17178 0.87728 0.86784 0.91102 0.93381 1.59384 1.18515 1.56115 1.04006 1.21445 0.96659 0.97180 0.92163 1.22274 0.96139 0.95630 1.05580 1.45204 1.26263 1.20446 1.23590 1.23158 1.00561 0.94091 0.90570 1.69942 1.07860 1.13736 1.27790 1.20039 0.92181 0.97652 0.96780 1.21648 0.97610 0.97181 0.99676 1.21861 0.97607 0.98221 0.99340 1.21767 0.99016 0.84719 0.96010 0.92697 0.88147 0.82597 0.81162 0.90069 0.89312 0.90564 0.91384 0.90842 0.89966 0.89953 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.10 11.54 55.43 0.64 -25.46 16 2 C 0.06 1.72 5.38 -17.82 -0.10 1.63 16 3 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -15.31 8.69 -34.44 -0.30 -15.61 16 8 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 9 C 0.28 7.73 3.25 -70.02 -0.23 7.50 16 10 H 0.05 1.47 8.14 -51.93 -0.42 1.04 16 11 N -0.85 -21.02 8.50 -6.65 -0.06 -21.08 16 12 C 0.05 1.35 6.25 -82.72 -0.52 0.83 16 13 C -0.07 -1.38 10.77 -16.76 -0.18 -1.56 16 14 N -0.47 -8.19 3.13 -113.75 -0.36 -8.55 16 15 C 0.18 3.41 7.65 -155.24 -1.19 2.22 16 16 N -0.47 -11.46 11.22 -6.88 -0.08 -11.54 16 17 C -0.03 -0.38 6.33 -27.51 -0.17 -0.55 16 18 C -0.12 -1.22 5.96 -26.45 -0.16 -1.38 16 19 C -0.13 -1.23 5.94 -26.52 -0.16 -1.38 16 20 C 0.11 1.27 6.98 -3.92 -0.03 1.24 16 21 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 22 H 0.31 7.30 8.74 -39.29 -0.34 6.96 16 23 H 0.36 9.40 7.08 -39.29 -0.28 9.13 16 24 H 0.17 3.22 7.77 -52.48 -0.41 2.81 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 29 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 265.32 15.07 4.00 4.00 Total: -1.00 -32.59 265.32 -8.27 -40.86 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -4.37 Total: 11.52 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -3.02 Total: -7.06 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: 0.15 Total: -66.62 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.59 -8.27 -40.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254481.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.967 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds