Wall clock time and date at job start Mon Mar 30 2020 03:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32336 * 120.45087 * 2 1 4 4 C 1.31790 * 120.81539 * 180.28876 * 3 2 1 5 5 N 1.31800 * 121.75932 * 359.70820 * 4 3 2 6 6 C 1.32330 * 120.81383 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.44668 * 179.97438 * 6 5 4 8 8 C 1.38599 * 119.10909 * 0.02562 * 6 5 4 9 9 C 1.50699 * 120.80261 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47196 * 359.97438 * 9 8 6 11 11 C 1.50700 * 109.46709 * 239.99568 * 9 8 6 12 12 H 1.08005 * 120.00417 * 244.64024 * 11 9 8 13 13 C 1.37880 * 120.00175 * 64.64237 * 11 9 8 14 14 N 1.31516 * 119.99767 * 16.94775 * 13 11 9 15 15 Si 1.86796 * 120.00377 * 196.67134 * 13 11 9 16 16 H 1.48491 * 109.47434 * 89.99667 * 15 13 11 17 17 H 1.48499 * 109.47262 * 210.00184 * 15 13 11 18 18 H 1.48502 * 109.46867 * 329.99674 * 15 13 11 19 19 C 1.53001 * 109.47636 * 119.99909 * 9 8 6 20 20 N 1.46895 * 109.47298 * 186.15520 * 19 9 8 21 21 H 1.08997 * 109.46593 * 270.28133 * 1 2 3 22 22 H 1.08999 * 109.46834 * 30.27829 * 1 2 3 23 23 H 1.09001 * 109.47363 * 150.27894 * 1 2 3 24 24 H 1.08002 * 119.12471 * 179.73226 * 4 3 2 25 25 H 1.08997 * 109.47271 * 270.01978 * 7 6 5 26 26 H 1.09003 * 109.47225 * 30.02209 * 7 6 5 27 27 H 1.09001 * 109.47185 * 150.01949 * 7 6 5 28 28 H 0.97003 * 120.00335 * 3.81744 * 14 13 11 29 29 H 1.09001 * 109.46387 * 306.15118 * 19 9 8 30 30 H 1.09003 * 109.47037 * 66.14822 * 19 9 8 31 31 H 1.00900 * 111.00217 * 66.38774 * 20 19 9 32 32 H 1.00902 * 110.99974 * 190.35127 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1777 1.1408 0.0000 4 6 3.4956 1.1492 -0.0057 5 7 4.1965 0.0330 -0.0059 6 6 3.5944 -1.1454 0.0002 7 6 4.4040 -2.4165 -0.0006 8 6 2.2093 -1.1949 0.0063 9 6 1.4844 -2.5161 0.0139 10 1 2.2105 -3.3289 0.0131 11 6 0.6146 -2.6188 -1.2125 12 1 -0.4596 -2.6648 -1.1104 13 6 1.1902 -2.6539 -2.4649 14 7 2.4692 -2.9322 -2.5932 15 14 0.1518 -2.3139 -3.9800 16 1 0.1773 -0.8602 -4.2815 17 1 0.6999 -3.0689 -5.1353 18 1 -1.2474 -2.7426 -3.7274 19 6 0.6121 -2.6120 1.2672 20 7 0.0210 -3.9542 1.3508 21 1 -0.3632 0.0050 1.0277 22 1 -0.3633 0.8875 -0.5182 23 1 -0.3634 -0.8925 -0.5095 24 1 4.0152 2.0960 -0.0100 25 1 4.5942 -2.7255 -1.0285 26 1 5.3523 -2.2437 0.5083 27 1 3.8509 -3.1998 0.5177 28 1 2.9952 -3.1670 -1.8127 29 1 1.2239 -2.4288 2.1505 30 1 -0.1825 -1.8676 1.2148 31 1 0.7319 -4.6535 1.5050 32 1 -0.6868 -3.9935 2.0689 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261258990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:00 Heat of formation + Delta-G solvation = 36.807204 kcal Electronic energy + Delta-G solvation = -15709.632715 eV Core-core repulsion = 13283.886776 eV Total energy + Delta-G solvation = -2425.745940 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.41571 -36.15923 -34.03811 -32.79959 -31.74809 -28.85625 -28.12794 -26.40717 -24.03649 -22.79288 -20.86613 -20.30016 -17.39294 -16.65933 -15.55172 -15.32065 -14.39259 -14.20253 -13.83933 -13.50034 -12.80907 -12.61899 -12.58863 -12.19534 -12.00400 -11.84526 -11.60702 -11.18789 -11.04316 -10.77578 -10.13943 -9.96875 -9.81633 -9.42565 -9.10635 -8.45474 -8.21142 -8.13216 -7.80588 -6.40893 -4.06452 1.87040 1.90284 3.44044 3.44436 3.59784 4.48567 4.56791 4.80308 4.91655 5.10389 5.31339 5.37778 5.75954 5.87738 5.99884 6.08873 6.09116 6.18388 6.21399 6.41053 6.51235 6.53492 6.58828 6.67725 7.00944 7.33781 7.36031 7.73699 7.92566 8.02337 8.13005 8.45294 8.81304 8.92139 9.56520 10.94932 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.014181 C = 0.012538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.780614 B = 1973.990437 C = 2232.699798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.176 3.824 3 N -0.535 5.535 4 C 0.258 3.742 5 N -0.532 5.532 6 C 0.159 3.841 7 C -0.103 4.103 8 C -0.129 4.129 9 C 0.070 3.930 10 H 0.039 0.961 11 C -0.571 4.571 12 H 0.065 0.935 13 C 0.027 3.973 14 N -0.901 5.901 15 Si 1.053 2.947 16 H -0.289 1.289 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.075 3.925 20 N -0.831 5.831 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.125 0.875 24 H 0.181 0.819 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.274 0.726 29 H -0.004 1.004 30 H 0.073 0.927 31 H 0.332 0.668 32 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 1.514 6.644 6.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.031 3.969 3 N -0.251 5.251 4 C -0.031 4.031 5 N -0.248 5.248 6 C 0.014 3.986 7 C -0.160 4.160 8 C -0.134 4.134 9 C 0.050 3.950 10 H 0.056 0.944 11 C -0.608 4.608 12 H 0.083 0.917 13 C -0.179 4.179 14 N -0.537 5.537 15 Si 0.881 3.119 16 H -0.215 1.215 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.056 4.056 20 N -0.358 5.358 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.143 0.857 24 H 0.197 0.803 25 H 0.110 0.890 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.014 0.986 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.920 2.655 4.242 5.088 hybrid contribution 0.097 -0.662 2.468 2.557 sum -0.823 1.993 6.710 7.048 Atomic orbital electron populations 1.21249 0.88697 1.05911 1.01896 1.21389 0.97325 0.87411 0.90750 1.68095 1.10168 1.31195 1.15641 1.24420 0.87172 0.96241 0.95247 1.68029 1.42266 0.98926 1.15538 1.21426 0.91606 0.93431 0.92154 1.20782 0.98483 0.92709 1.04048 1.22060 0.94290 0.99828 0.97222 1.17918 0.94307 0.88268 0.94537 0.94369 1.21599 0.94047 1.54883 0.90261 0.91661 1.25699 0.97497 0.93643 1.01082 1.70803 1.08060 1.40395 1.34408 0.83774 0.75221 0.76837 0.76029 1.21543 1.21178 1.21055 1.21931 0.97488 0.90546 0.95608 1.58460 1.17720 1.05625 1.54039 0.91821 0.91917 0.85746 0.80277 0.88975 0.91553 0.90628 0.91342 0.98635 0.90919 0.85682 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.31 36.01 0.30 -2.04 16 2 C 0.18 3.90 6.62 -82.24 -0.54 3.35 16 3 N -0.54 -11.55 10.38 -10.79 -0.11 -11.66 16 4 C 0.26 5.24 12.28 -92.15 -1.13 4.11 16 5 N -0.53 -11.54 10.38 -10.80 -0.11 -11.66 16 6 C 0.16 3.52 6.68 -82.24 -0.55 2.97 16 7 C -0.10 -2.00 8.64 36.01 0.31 -1.69 16 8 C -0.13 -2.93 4.25 -104.35 -0.44 -3.37 16 9 C 0.07 1.56 1.57 -92.92 -0.15 1.42 16 10 H 0.04 0.91 4.81 -51.93 -0.25 0.66 16 11 C -0.57 -14.33 5.82 -34.44 -0.20 -14.53 16 12 H 0.07 1.67 7.13 -52.48 -0.37 1.29 16 13 C 0.03 0.73 5.16 -17.82 -0.09 0.64 16 14 N -0.90 -25.41 13.44 55.43 0.75 -24.67 16 15 Si 1.05 24.55 29.94 -169.99 -5.09 19.46 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 C 0.07 1.42 5.77 -3.83 -0.02 1.40 16 20 N -0.83 -14.28 9.33 -10.37 -0.10 -14.38 16 21 H 0.06 1.07 7.27 -51.93 -0.38 0.69 16 22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.12 2.61 4.03 -51.93 -0.21 2.40 16 24 H 0.18 2.89 8.06 -52.49 -0.42 2.47 16 25 H 0.09 1.94 6.68 -51.93 -0.35 1.59 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.08 1.39 6.20 -51.93 -0.32 1.07 16 28 H 0.27 7.40 4.04 -40.82 -0.16 7.23 16 29 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.07 1.36 4.94 -51.93 -0.26 1.10 16 31 H 0.33 5.32 9.08 -39.29 -0.36 4.96 16 32 H 0.33 4.59 9.08 -39.29 -0.36 4.23 16 LS Contribution 255.63 15.07 3.85 3.85 Total: -1.00 -29.89 255.63 -6.83 -36.73 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -3.50 Total: 10.07 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.52 Total: -7.75 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.42 Total: -62.37 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.46 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.89 -6.83 -36.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.535 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds