Wall clock time and date at job start Mon Mar 30 2020 03:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32336 * 120.45087 * 2 1 4 4 C 1.31790 * 120.81539 * 180.28876 * 3 2 1 5 5 N 1.31800 * 121.75932 * 359.70820 * 4 3 2 6 6 C 1.32330 * 120.81383 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.44668 * 179.97438 * 6 5 4 8 8 C 1.38599 * 119.10909 * 0.02562 * 6 5 4 9 9 C 1.50699 * 120.80261 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47196 * 359.97438 * 9 8 6 11 11 C 1.50700 * 109.46709 * 239.99568 * 9 8 6 12 12 H 1.08005 * 120.00417 * 244.64024 * 11 9 8 13 13 C 1.37880 * 120.00175 * 64.64237 * 11 9 8 14 14 N 1.31516 * 119.99767 * 16.94775 * 13 11 9 15 15 Si 1.86796 * 120.00377 * 196.67134 * 13 11 9 16 16 H 1.48491 * 109.47434 * 89.99667 * 15 13 11 17 17 H 1.48499 * 109.47262 * 210.00184 * 15 13 11 18 18 H 1.48502 * 109.46867 * 329.99674 * 15 13 11 19 19 C 1.53001 * 109.47636 * 119.99909 * 9 8 6 20 20 N 1.46895 * 109.47298 * 186.15520 * 19 9 8 21 21 H 1.08997 * 109.46593 * 270.28133 * 1 2 3 22 22 H 1.08999 * 109.46834 * 30.27829 * 1 2 3 23 23 H 1.09001 * 109.47363 * 150.27894 * 1 2 3 24 24 H 1.08002 * 119.12471 * 179.73226 * 4 3 2 25 25 H 1.08997 * 109.47271 * 270.01978 * 7 6 5 26 26 H 1.09003 * 109.47225 * 30.02209 * 7 6 5 27 27 H 1.09001 * 109.47185 * 150.01949 * 7 6 5 28 28 H 0.97003 * 120.00335 * 3.81744 * 14 13 11 29 29 H 1.09001 * 109.46387 * 306.15118 * 19 9 8 30 30 H 1.09003 * 109.47037 * 66.14822 * 19 9 8 31 31 H 1.00900 * 111.00217 * 66.38774 * 20 19 9 32 32 H 1.00902 * 110.99974 * 190.35127 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1777 1.1408 0.0000 4 6 3.4956 1.1492 -0.0057 5 7 4.1965 0.0330 -0.0059 6 6 3.5944 -1.1454 0.0002 7 6 4.4040 -2.4165 -0.0006 8 6 2.2093 -1.1949 0.0063 9 6 1.4844 -2.5161 0.0139 10 1 2.2105 -3.3289 0.0131 11 6 0.6146 -2.6188 -1.2125 12 1 -0.4596 -2.6648 -1.1104 13 6 1.1902 -2.6539 -2.4649 14 7 2.4692 -2.9322 -2.5932 15 14 0.1518 -2.3139 -3.9800 16 1 0.1773 -0.8602 -4.2815 17 1 0.6999 -3.0689 -5.1353 18 1 -1.2474 -2.7426 -3.7274 19 6 0.6121 -2.6120 1.2672 20 7 0.0210 -3.9542 1.3508 21 1 -0.3632 0.0050 1.0277 22 1 -0.3633 0.8875 -0.5182 23 1 -0.3634 -0.8925 -0.5095 24 1 4.0152 2.0960 -0.0100 25 1 4.5942 -2.7255 -1.0285 26 1 5.3523 -2.2437 0.5083 27 1 3.8509 -3.1998 0.5177 28 1 2.9952 -3.1670 -1.8127 29 1 1.2239 -2.4288 2.1505 30 1 -0.1825 -1.8676 1.2148 31 1 0.7319 -4.6535 1.5050 32 1 -0.6868 -3.9935 2.0689 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:00 Heat of formation + Delta-G solvation = 16.700420 kcal Electronic energy + Delta-G solvation = -15710.504611 eV Core-core repulsion = 13283.886776 eV Total energy + Delta-G solvation = -2426.617835 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.05876 -37.82600 -35.66992 -34.43254 -33.51495 -30.47136 -29.76251 -28.03162 -25.91076 -24.36083 -22.49967 -22.00514 -19.21521 -18.37351 -17.11423 -16.78881 -16.04146 -15.86183 -15.68886 -15.16155 -14.35957 -14.20090 -14.14265 -13.83524 -13.59158 -13.52102 -13.25293 -12.88316 -12.65339 -12.56890 -11.94567 -11.68766 -11.51180 -11.06336 -10.94060 -10.29473 -10.00409 -9.74256 -9.30430 -8.43856 -6.07938 0.20740 0.23340 1.55715 1.59858 1.76150 2.61463 2.90999 3.22440 3.28530 3.34507 3.74272 3.84995 4.12709 4.34408 4.48509 4.53954 4.55251 4.62333 4.74735 4.84364 4.92092 4.95274 5.00529 5.05816 5.42283 5.62859 5.73396 6.16165 6.24445 6.44428 6.46412 6.78717 6.85860 7.27406 7.59670 8.94886 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.014181 C = 0.012538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.780614 B = 1973.990437 C = 2232.699798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.163 3.837 3 N -0.544 5.544 4 C 0.256 3.744 5 N -0.543 5.543 6 C 0.143 3.857 7 C -0.095 4.095 8 C -0.149 4.149 9 C 0.072 3.928 10 H 0.022 0.978 11 C -0.558 4.558 12 H 0.060 0.940 13 C -0.019 4.019 14 N -0.938 5.938 15 Si 1.085 2.915 16 H -0.290 1.290 17 H -0.294 1.294 18 H -0.264 1.264 19 C 0.082 3.918 20 N -0.840 5.840 21 H 0.090 0.910 22 H 0.071 0.929 23 H 0.108 0.892 24 H 0.219 0.781 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.272 0.728 29 H 0.004 0.996 30 H 0.077 0.923 31 H 0.338 0.662 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.932 2.171 7.503 8.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.018 3.982 3 N -0.259 5.259 4 C -0.033 4.033 5 N -0.259 5.259 6 C -0.001 4.001 7 C -0.153 4.153 8 C -0.154 4.154 9 C 0.052 3.948 10 H 0.040 0.960 11 C -0.596 4.596 12 H 0.078 0.922 13 C -0.220 4.220 14 N -0.576 5.576 15 Si 0.911 3.089 16 H -0.217 1.217 17 H -0.220 1.220 18 H -0.189 1.189 19 C -0.049 4.049 20 N -0.370 5.370 21 H 0.108 0.892 22 H 0.090 0.910 23 H 0.126 0.874 24 H 0.235 0.765 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.023 0.977 30 H 0.095 0.905 31 H 0.150 0.850 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.647 3.301 5.126 6.316 hybrid contribution 0.326 -0.831 2.267 2.436 sum -1.321 2.470 7.393 7.906 Atomic orbital electron populations 1.21212 0.87103 1.05429 1.03461 1.21838 0.98648 0.87468 0.90245 1.68192 1.10711 1.30843 1.16200 1.25262 0.87167 0.97372 0.93450 1.68119 1.42462 0.99150 1.16178 1.21835 0.92031 0.94441 0.91821 1.20733 0.99422 0.91954 1.03158 1.22109 0.94724 0.99997 0.98595 1.17838 0.94022 0.87826 0.95103 0.95965 1.21772 0.93991 1.52786 0.91022 0.92208 1.26589 0.97815 0.93978 1.03624 1.70856 1.08995 1.43092 1.34640 0.83335 0.75327 0.76407 0.73808 1.21698 1.22046 1.18879 1.21769 0.97216 0.91643 0.94279 1.58378 1.18418 1.04933 1.55286 0.89206 0.90968 0.87352 0.76454 0.90838 0.89272 0.90055 0.91539 0.97742 0.90460 0.85000 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.24 8.31 71.24 0.59 -3.64 16 2 C 0.16 6.97 6.62 42.57 0.28 7.25 16 3 N -0.54 -22.44 10.38 -188.06 -1.95 -24.39 16 4 C 0.26 9.88 12.28 180.88 2.22 12.10 16 5 N -0.54 -22.86 10.38 -188.07 -1.95 -24.81 16 6 C 0.14 6.26 6.68 42.57 0.28 6.55 16 7 C -0.10 -3.69 8.64 71.24 0.62 -3.07 16 8 C -0.15 -6.65 4.25 -19.69 -0.08 -6.74 16 9 C 0.07 3.19 1.57 -12.29 -0.02 3.17 16 10 H 0.02 1.06 4.81 -2.39 -0.01 1.05 16 11 C -0.56 -27.67 5.82 25.60 0.15 -27.52 16 12 H 0.06 2.99 7.13 -2.91 -0.02 2.97 16 13 C -0.02 -1.02 5.16 84.66 0.44 -0.58 16 14 N -0.94 -53.43 13.44 21.45 0.29 -53.14 16 15 Si 1.09 49.31 29.94 68.60 2.05 51.36 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 18 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 19 C 0.08 2.97 5.77 86.30 0.50 3.46 16 20 N -0.84 -27.32 9.33 -186.72 -1.74 -29.06 16 21 H 0.09 2.78 7.27 -2.39 -0.02 2.76 16 22 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 23 H 0.11 4.37 4.03 -2.39 -0.01 4.36 16 24 H 0.22 6.38 8.06 -2.91 -0.02 6.35 16 25 H 0.07 3.14 6.68 -2.39 -0.02 3.12 16 26 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 27 H 0.08 2.98 6.20 -2.39 -0.01 2.97 16 28 H 0.27 14.95 4.04 -92.71 -0.37 14.58 16 29 H 0.00 0.15 8.14 -2.39 -0.02 0.14 16 30 H 0.08 2.72 4.94 -2.39 -0.01 2.71 16 31 H 0.34 10.31 9.08 -89.69 -0.81 9.50 16 32 H 0.34 8.90 9.08 -89.69 -0.81 8.08 16 Total: -1.00 -62.32 255.63 1.61 -60.71 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.07 Total: 28.35 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 4.98 Total: -9.03 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -5.36 Total: -131.40 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.05 Total: 51.36 kcal Total: -62.32 1.61 -60.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.413 kcal (2) G-P(sol) polarization free energy of solvation -62.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds