Wall clock time and date at job start Mon Mar 30 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32339 * 120.44679 * 2 1 4 4 C 1.31794 * 120.81577 * 180.28763 * 3 2 1 5 5 N 1.31794 * 121.75555 * 359.72099 * 4 3 2 6 6 C 1.32335 * 120.81888 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.44692 * 180.02562 * 6 5 4 8 8 C 1.38598 * 119.10523 * 0.02562 * 6 5 4 9 9 C 1.50697 * 120.80305 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46883 * 9.16492 * 9 8 6 11 11 C 1.50696 * 109.46939 * 129.16261 * 9 8 6 12 12 H 1.07996 * 120.00308 * 0.02562 * 11 9 8 13 13 C 1.37878 * 119.99907 * 180.02562 * 11 9 8 14 14 N 1.31522 * 120.00319 * 180.02562 * 13 11 9 15 15 Si 1.86800 * 120.00175 * 359.97438 * 13 11 9 16 16 H 1.48508 * 109.47303 * 270.00461 * 15 13 11 17 17 H 1.48505 * 109.46879 * 30.00110 * 15 13 11 18 18 H 1.48499 * 109.47582 * 150.00119 * 15 13 11 19 19 C 1.53000 * 109.47386 * 249.16647 * 9 8 6 20 20 N 1.46894 * 109.47454 * 66.02950 * 19 9 8 21 21 H 1.09006 * 109.46596 * 276.42102 * 1 2 3 22 22 H 1.08995 * 109.47362 * 36.42114 * 1 2 3 23 23 H 1.08998 * 109.47472 * 156.42468 * 1 2 3 24 24 H 1.07995 * 119.12229 * 179.73128 * 4 3 2 25 25 H 1.08998 * 109.46780 * 269.97613 * 7 6 5 26 26 H 1.08992 * 109.47360 * 29.97975 * 7 6 5 27 27 H 1.09002 * 109.46730 * 149.97543 * 7 6 5 28 28 H 0.96994 * 120.00016 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47196 * 186.03336 * 19 9 8 30 30 H 1.09003 * 109.46614 * 306.03118 * 19 9 8 31 31 H 1.00901 * 111.00284 * 56.04338 * 20 19 9 32 32 H 1.00903 * 111.00354 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1776 1.1409 0.0000 4 6 3.4955 1.1494 -0.0057 5 7 4.1964 0.0332 -0.0061 6 6 3.5944 -1.1453 -0.0003 7 6 4.4041 -2.4163 -0.0002 8 6 2.2094 -1.1948 0.0058 9 6 1.4845 -2.5160 0.0131 10 1 2.1999 -3.3220 0.1764 11 6 0.4609 -2.5211 1.1191 12 1 0.3464 -1.6543 1.7531 13 6 -0.3295 -3.6326 1.3218 14 7 -1.2231 -3.6370 2.2867 15 14 -0.1320 -5.1317 0.2249 16 1 -1.0356 -5.0098 -0.9473 17 1 1.2749 -5.2217 -0.2418 18 1 -0.4784 -6.3553 0.9917 19 6 0.7836 -2.7207 -1.3314 20 7 1.7902 -2.8600 -2.3922 21 1 -0.3633 0.1149 1.0213 22 1 -0.3634 0.8269 -0.6101 23 1 -0.3634 -0.9419 -0.4110 24 1 4.0150 2.0962 -0.0099 25 1 4.5945 -2.7258 -1.0278 26 1 5.3522 -2.2432 0.5087 27 1 3.8510 -3.1993 0.5186 28 1 -1.7789 -4.4190 2.4295 29 1 0.1729 -3.6226 -1.2892 30 1 0.1480 -1.8611 -1.5443 31 1 2.4321 -3.6105 -2.1852 32 1 1.3520 -2.9960 -3.2909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261258992.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:03 Heat of formation + Delta-G solvation = 46.623617 kcal Electronic energy + Delta-G solvation = -15598.521638 eV Core-core repulsion = 13173.201370 eV Total energy + Delta-G solvation = -2425.320268 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.52987 -36.33433 -34.11131 -32.56352 -32.20364 -29.08061 -28.54219 -26.76706 -23.86614 -23.22500 -20.92468 -20.15841 -17.67231 -16.31528 -15.67179 -15.48188 -15.13195 -14.50877 -13.58458 -13.52578 -13.19353 -12.73878 -12.67395 -12.34527 -12.13563 -11.93287 -11.82948 -11.21314 -11.14361 -10.97548 -10.38955 -10.03850 -9.79335 -9.50659 -9.35075 -8.78801 -8.47590 -8.20696 -8.04952 -6.25704 -4.26203 1.76369 1.80369 3.08130 3.16359 3.23333 4.19889 4.46774 4.69294 4.82315 4.99209 5.19214 5.21101 5.57898 5.76280 5.88394 5.98059 6.02461 6.10827 6.25751 6.37964 6.40927 6.43659 6.56575 6.62808 7.00003 7.17161 7.29883 7.40056 7.64200 7.79114 7.86179 8.31700 8.77837 8.81988 9.32560 10.86000 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030533 B = 0.011907 C = 0.010542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.809338 B = 2350.949660 C = 2655.427588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.181 3.819 3 N -0.534 5.534 4 C 0.264 3.736 5 N -0.534 5.534 6 C 0.161 3.839 7 C -0.102 4.102 8 C -0.109 4.109 9 C 0.054 3.946 10 H 0.045 0.955 11 C -0.516 4.516 12 H 0.083 0.917 13 C 0.075 3.925 14 N -0.889 5.889 15 Si 0.886 3.114 16 H -0.280 1.280 17 H -0.269 1.269 18 H -0.295 1.295 19 C 0.051 3.949 20 N -0.852 5.852 21 H 0.083 0.917 22 H 0.055 0.945 23 H 0.104 0.896 24 H 0.182 0.818 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.267 0.733 29 H 0.021 0.979 30 H 0.078 0.922 31 H 0.332 0.668 32 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 1.256 -6.660 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.036 3.964 3 N -0.249 5.249 4 C -0.025 4.025 5 N -0.249 5.249 6 C 0.016 3.984 7 C -0.160 4.160 8 C -0.113 4.113 9 C 0.034 3.966 10 H 0.063 0.937 11 C -0.554 4.554 12 H 0.101 0.899 13 C -0.128 4.128 14 N -0.526 5.526 15 Si 0.716 3.284 16 H -0.207 1.207 17 H -0.194 1.194 18 H -0.222 1.222 19 C -0.079 4.079 20 N -0.380 5.380 21 H 0.101 0.899 22 H 0.074 0.926 23 H 0.122 0.878 24 H 0.199 0.801 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.143 0.857 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.114 2.762 -6.345 9.234 hybrid contribution -0.821 -2.491 -0.626 2.696 sum 5.294 0.271 -6.971 8.758 Atomic orbital electron populations 1.21053 0.87878 1.03559 1.03394 1.21544 0.97637 0.87339 0.89863 1.68134 1.10123 1.31079 1.15592 1.24481 0.87158 0.96274 0.94544 1.68063 1.42173 0.98851 1.15847 1.21390 0.91421 0.93497 0.92058 1.20736 0.99158 0.93161 1.02906 1.21332 0.94082 0.98222 0.97668 1.18301 0.95465 0.89908 0.92906 0.93736 1.20978 1.17551 1.02849 1.14006 0.89871 1.24987 0.94836 0.97990 0.95009 1.69864 1.21890 1.30122 1.30723 0.86882 0.78694 0.82729 0.80087 1.20723 1.19406 1.22213 1.22613 0.93563 0.99725 0.91985 1.58928 1.21828 1.52227 1.05032 0.89851 0.92601 0.87770 0.80119 0.90347 0.91156 0.89817 0.92335 0.96091 0.90362 0.85665 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 8.27 36.01 0.30 -1.71 16 2 C 0.18 3.79 6.49 -82.24 -0.53 3.26 16 3 N -0.53 -10.72 10.38 -10.80 -0.11 -10.83 16 4 C 0.26 4.85 12.29 -92.15 -1.13 3.72 16 5 N -0.53 -10.27 10.38 -10.80 -0.11 -10.38 16 6 C 0.16 3.15 6.82 -82.24 -0.56 2.59 16 7 C -0.10 -1.65 9.73 36.01 0.35 -1.30 16 8 C -0.11 -2.28 4.53 -104.36 -0.47 -2.76 16 9 C 0.05 1.17 1.41 -92.93 -0.13 1.04 16 10 H 0.04 0.96 4.65 -51.93 -0.24 0.72 16 11 C -0.52 -13.00 7.03 -34.44 -0.24 -13.25 16 12 H 0.08 2.31 6.36 -52.49 -0.33 1.97 16 13 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 14 N -0.89 -25.10 13.96 55.43 0.77 -24.33 16 15 Si 0.89 19.97 24.42 -169.99 -4.15 15.82 16 16 H -0.28 -6.19 6.82 56.52 0.39 -5.81 16 17 H -0.27 -5.68 6.53 56.52 0.37 -5.31 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 C 0.05 0.99 5.39 -3.83 -0.02 0.97 16 20 N -0.85 -14.04 9.37 -10.37 -0.10 -14.14 16 21 H 0.08 1.71 7.43 -51.93 -0.39 1.32 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.10 2.13 3.68 -51.93 -0.19 1.94 16 24 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 1.38 6.07 -51.93 -0.32 1.06 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 29 H 0.02 0.44 3.22 -51.93 -0.17 0.27 16 30 H 0.08 1.54 5.37 -51.93 -0.28 1.26 16 31 H 0.33 5.12 8.99 -39.29 -0.35 4.77 16 32 H 0.33 4.63 9.08 -39.29 -0.36 4.27 16 LS Contribution 251.99 15.07 3.80 3.80 Total: -1.00 -28.84 251.99 -5.94 -34.78 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -3.50 Total: 10.87 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.54 Total: -5.58 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.45 Total: -59.69 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.15 Total: 15.82 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.84 -5.94 -34.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258992.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.402 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds