Wall clock time and date at job start Mon Mar 30 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32339 * 120.44679 * 2 1 4 4 C 1.31794 * 120.81577 * 180.28763 * 3 2 1 5 5 N 1.31794 * 121.75555 * 359.72099 * 4 3 2 6 6 C 1.32335 * 120.81888 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.44692 * 180.02562 * 6 5 4 8 8 C 1.38598 * 119.10523 * 0.02562 * 6 5 4 9 9 C 1.50697 * 120.80305 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46883 * 9.16492 * 9 8 6 11 11 C 1.50696 * 109.46939 * 129.16261 * 9 8 6 12 12 H 1.07996 * 120.00308 * 0.02562 * 11 9 8 13 13 C 1.37878 * 119.99907 * 180.02562 * 11 9 8 14 14 N 1.31522 * 120.00319 * 180.02562 * 13 11 9 15 15 Si 1.86800 * 120.00175 * 359.97438 * 13 11 9 16 16 H 1.48508 * 109.47303 * 270.00461 * 15 13 11 17 17 H 1.48505 * 109.46879 * 30.00110 * 15 13 11 18 18 H 1.48499 * 109.47582 * 150.00119 * 15 13 11 19 19 C 1.53000 * 109.47386 * 249.16647 * 9 8 6 20 20 N 1.46894 * 109.47454 * 66.02950 * 19 9 8 21 21 H 1.09006 * 109.46596 * 276.42102 * 1 2 3 22 22 H 1.08995 * 109.47362 * 36.42114 * 1 2 3 23 23 H 1.08998 * 109.47472 * 156.42468 * 1 2 3 24 24 H 1.07995 * 119.12229 * 179.73128 * 4 3 2 25 25 H 1.08998 * 109.46780 * 269.97613 * 7 6 5 26 26 H 1.08992 * 109.47360 * 29.97975 * 7 6 5 27 27 H 1.09002 * 109.46730 * 149.97543 * 7 6 5 28 28 H 0.96994 * 120.00016 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47196 * 186.03336 * 19 9 8 30 30 H 1.09003 * 109.46614 * 306.03118 * 19 9 8 31 31 H 1.00901 * 111.00284 * 56.04338 * 20 19 9 32 32 H 1.00903 * 111.00354 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1776 1.1409 0.0000 4 6 3.4955 1.1494 -0.0057 5 7 4.1964 0.0332 -0.0061 6 6 3.5944 -1.1453 -0.0003 7 6 4.4041 -2.4163 -0.0002 8 6 2.2094 -1.1948 0.0058 9 6 1.4845 -2.5160 0.0131 10 1 2.1999 -3.3220 0.1764 11 6 0.4609 -2.5211 1.1191 12 1 0.3464 -1.6543 1.7531 13 6 -0.3295 -3.6326 1.3218 14 7 -1.2231 -3.6370 2.2867 15 14 -0.1320 -5.1317 0.2249 16 1 -1.0356 -5.0098 -0.9473 17 1 1.2749 -5.2217 -0.2418 18 1 -0.4784 -6.3553 0.9917 19 6 0.7836 -2.7207 -1.3314 20 7 1.7902 -2.8600 -2.3922 21 1 -0.3633 0.1149 1.0213 22 1 -0.3634 0.8269 -0.6101 23 1 -0.3634 -0.9419 -0.4110 24 1 4.0150 2.0962 -0.0099 25 1 4.5945 -2.7258 -1.0278 26 1 5.3522 -2.2432 0.5087 27 1 3.8510 -3.1993 0.5186 28 1 -1.7789 -4.4190 2.4295 29 1 0.1729 -3.6226 -1.2892 30 1 0.1480 -1.8611 -1.5443 31 1 2.4321 -3.6105 -2.1852 32 1 1.3520 -2.9960 -3.2909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258992.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:03 Heat of formation + Delta-G solvation = 25.528676 kcal Electronic energy + Delta-G solvation = -15599.436383 eV Core-core repulsion = 13173.201370 eV Total energy + Delta-G solvation = -2426.235014 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.04768 -37.93894 -35.60489 -34.35344 -33.78452 -30.63515 -30.12328 -28.28175 -25.65643 -24.72308 -22.42787 -21.82154 -19.40434 -17.97669 -17.25880 -17.04699 -16.61845 -16.05214 -15.27632 -15.05571 -14.91670 -14.19692 -14.09744 -13.86799 -13.71406 -13.42907 -13.30934 -12.94010 -12.76438 -12.58203 -12.01704 -11.75285 -11.54906 -11.10281 -11.01087 -10.75352 -10.01112 -9.76844 -9.46586 -8.26535 -6.30546 0.24367 0.25922 1.30116 1.35636 1.45648 2.31441 2.94273 3.07909 3.31624 3.35483 3.72741 3.81586 4.03092 4.19486 4.44948 4.52795 4.62457 4.72474 4.78153 4.83761 4.85048 4.98517 5.06178 5.11291 5.45221 5.51114 5.61100 5.77196 6.16674 6.27468 6.37426 6.63618 6.77837 7.31223 7.31313 8.88455 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030533 B = 0.011907 C = 0.010542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.809338 B = 2350.949660 C = 2655.427588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.164 3.836 3 N -0.547 5.547 4 C 0.264 3.736 5 N -0.538 5.538 6 C 0.158 3.842 7 C -0.100 4.100 8 C -0.133 4.133 9 C 0.061 3.939 10 H 0.051 0.949 11 C -0.507 4.507 12 H 0.044 0.956 13 C 0.021 3.979 14 N -0.941 5.941 15 Si 0.943 3.057 16 H -0.271 1.271 17 H -0.241 1.241 18 H -0.305 1.305 19 C 0.059 3.941 20 N -0.847 5.847 21 H 0.064 0.936 22 H 0.075 0.925 23 H 0.094 0.906 24 H 0.221 0.779 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.265 0.735 29 H 0.013 0.987 30 H 0.073 0.927 31 H 0.342 0.658 32 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.430 0.866 -8.542 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.020 3.980 3 N -0.262 5.262 4 C -0.024 4.024 5 N -0.254 5.254 6 C 0.013 3.987 7 C -0.157 4.157 8 C -0.137 4.137 9 C 0.041 3.959 10 H 0.069 0.931 11 C -0.545 4.545 12 H 0.062 0.938 13 C -0.177 4.177 14 N -0.580 5.580 15 Si 0.771 3.229 16 H -0.197 1.197 17 H -0.164 1.164 18 H -0.233 1.233 19 C -0.071 4.071 20 N -0.377 5.377 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.113 0.887 24 H 0.237 0.763 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.031 0.969 30 H 0.091 0.909 31 H 0.154 0.846 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.989 2.384 -8.258 11.735 hybrid contribution -1.334 -2.226 -0.005 2.595 sum 6.655 0.158 -8.263 10.611 Atomic orbital electron populations 1.20923 0.87929 1.03822 1.02454 1.21699 0.98003 0.88005 0.90290 1.68185 1.11045 1.30658 1.16356 1.25313 0.86801 0.97649 0.92589 1.68201 1.42006 0.98973 1.16221 1.21914 0.91238 0.94909 0.90595 1.20819 0.99206 0.91310 1.04400 1.21347 0.94961 0.97769 0.99590 1.18150 0.94491 0.90680 0.92595 0.93119 1.21109 1.17984 1.01215 1.14217 0.93814 1.25745 0.94524 1.01115 0.96326 1.70020 1.23643 1.31119 1.33267 0.85933 0.80304 0.78356 0.78323 1.19732 1.16427 1.23309 1.22328 0.93774 0.99148 0.91896 1.58785 1.21100 1.52882 1.04970 0.91767 0.90635 0.88749 0.76306 0.88195 0.89571 0.90233 0.92538 0.96898 0.90875 0.84554 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.77 8.27 71.24 0.59 -3.19 16 2 C 0.16 6.81 6.49 42.57 0.28 7.08 16 3 N -0.55 -21.26 10.38 -188.07 -1.95 -23.21 16 4 C 0.26 9.08 12.29 180.88 2.22 11.31 16 5 N -0.54 -19.34 10.38 -188.08 -1.95 -21.29 16 6 C 0.16 5.84 6.82 42.57 0.29 6.13 16 7 C -0.10 -2.92 9.73 71.24 0.69 -2.23 16 8 C -0.13 -5.41 4.53 -19.69 -0.09 -5.50 16 9 C 0.06 2.55 1.41 -12.29 -0.02 2.53 16 10 H 0.05 2.07 4.65 -2.39 -0.01 2.06 16 11 C -0.51 -25.98 7.03 25.60 0.18 -25.80 16 12 H 0.04 2.54 6.36 -2.91 -0.02 2.52 16 13 C 0.02 1.11 5.45 84.65 0.46 1.57 16 14 N -0.94 -54.87 13.96 21.45 0.30 -54.57 16 15 Si 0.94 40.52 24.42 68.60 1.67 42.20 16 16 H -0.27 -11.17 6.82 99.48 0.68 -10.49 16 17 H -0.24 -9.13 6.53 99.48 0.65 -8.48 16 18 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 19 C 0.06 2.18 5.39 86.30 0.46 2.65 16 20 N -0.85 -25.10 9.37 -186.72 -1.75 -26.85 16 21 H 0.06 2.77 7.43 -2.38 -0.02 2.75 16 22 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 23 H 0.09 3.93 3.68 -2.39 -0.01 3.92 16 24 H 0.22 5.53 8.06 -2.91 -0.02 5.51 16 25 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.08 2.39 6.07 -2.39 -0.01 2.38 16 28 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.01 0.52 3.22 -2.39 -0.01 0.51 16 30 H 0.07 2.80 5.37 -2.39 -0.01 2.79 16 31 H 0.34 9.15 8.99 -89.69 -0.81 8.35 16 32 H 0.35 8.51 9.08 -89.69 -0.81 7.69 16 Total: -1.00 -62.20 251.99 0.86 -61.34 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.53 Total: 27.83 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.07 Total: -5.44 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -5.35 Total: -125.93 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.67 Total: 42.20 kcal Total: -62.20 0.86 -61.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258992.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.869 kcal (2) G-P(sol) polarization free energy of solvation -62.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds