Wall clock time and date at job start Mon Mar 30 2020 02:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.33597 * 125.51061 * 269.68513 * 10 9 7 12 12 C 1.30387 * 109.47183 * 179.97438 * 11 10 9 13 13 N 1.33547 * 108.24940 * 0.15166 * 12 11 10 14 14 N 1.31114 * 125.51452 * 90.00266 * 10 9 7 15 15 C 1.47515 * 125.11405 * 180.31934 * 13 12 11 16 16 C 1.53609 * 107.13893 * 293.72389 * 15 13 12 17 17 C 1.50915 * 111.10421 * 80.35692 * 16 15 13 18 18 C 1.50986 * 116.43617 * 287.70002 * 17 16 15 19 19 C 1.51974 * 127.26970 * 179.73621 * 12 11 10 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09005 * 109.92505 * 53.13048 * 15 13 12 24 24 H 1.09007 * 109.92290 * 174.31935 * 15 13 12 25 25 H 1.09000 * 109.15303 * 319.93606 * 16 15 13 26 26 H 1.09007 * 109.11054 * 200.74227 * 16 15 13 27 27 H 1.09000 * 108.06209 * 165.94358 * 17 16 15 28 28 H 1.09001 * 108.03136 * 49.42689 * 17 16 15 29 29 H 1.09004 * 109.17365 * 311.85893 * 18 17 16 30 30 H 1.09002 * 109.12842 * 192.61395 * 18 17 16 31 31 H 1.08996 * 109.95490 * 4.97615 * 19 12 11 32 32 H 1.08999 * 109.95123 * 126.15530 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7300 -4.2335 -1.1004 12 6 3.5462 -5.1859 -0.7444 13 7 3.5829 -5.2282 0.5899 14 7 2.7250 -4.2284 1.0543 15 6 4.3957 -6.1662 1.3872 16 6 3.8386 -7.5753 1.1349 17 6 4.3509 -8.1368 -0.1689 18 6 3.7830 -7.5322 -1.4305 19 6 4.3303 -6.1149 -1.6564 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 5.4376 -6.1167 1.0706 24 1 4.3161 -5.9195 2.4459 25 1 2.7501 -7.5287 1.1011 26 1 4.1432 -8.2309 1.9508 27 1 4.1404 -9.2062 -0.1822 28 1 5.4330 -8.0078 -0.1898 29 1 2.6969 -7.4878 -1.3488 30 1 4.0526 -8.1598 -2.2800 31 1 4.1877 -5.8224 -2.6967 32 1 5.3896 -6.0789 -1.4021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261282609.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:42 Heat of formation + Delta-G solvation = 66.702710 kcal Electronic energy + Delta-G solvation = -14862.392388 eV Core-core repulsion = 12437.942814 eV Total energy + Delta-G solvation = -2424.449573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.57616 -37.18372 -33.52795 -33.16401 -31.47918 -29.84403 -28.53839 -25.64024 -24.09083 -23.15393 -20.66609 -19.64777 -19.41941 -16.75063 -16.26380 -15.43102 -14.73561 -14.61393 -14.40880 -14.18071 -13.45224 -12.76992 -12.66231 -12.46215 -11.85730 -11.75938 -11.24957 -11.14623 -11.01728 -10.92382 -10.82369 -10.64967 -10.55583 -9.84651 -9.49074 -9.12310 -8.98609 -8.35691 -8.35308 -5.98373 -3.99861 2.37418 2.91077 3.37187 3.41806 3.46651 3.84868 4.36578 4.49782 4.52143 4.56326 4.69162 4.95072 5.17062 5.26420 5.29331 5.38042 5.50440 5.56398 5.63433 5.78209 5.86543 5.93096 5.97990 6.12069 6.17101 7.19520 7.27991 7.44979 7.63729 7.67315 7.97355 8.34566 9.00652 9.08102 9.61777 11.12828 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055084 B = 0.006297 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.191903 B = 4445.431445 C = 4509.862234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.504 4.504 8 H 0.054 0.946 9 C 0.103 3.897 10 C 0.264 3.736 11 N -0.536 5.536 12 C 0.253 3.747 13 N -0.392 5.392 14 N -0.334 5.334 15 C 0.133 3.867 16 C -0.136 4.136 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.035 4.035 20 H 0.263 0.737 21 H 0.042 0.958 22 H 0.047 0.953 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.875 -16.633 -0.356 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.543 4.543 8 H 0.073 0.927 9 C 0.064 3.936 10 C -0.016 4.016 11 N -0.264 5.264 12 C -0.024 4.024 13 N -0.183 5.183 14 N -0.160 5.160 15 C 0.010 3.990 16 C -0.175 4.175 17 C -0.160 4.160 18 C -0.156 4.156 19 C -0.075 4.075 20 H 0.072 0.928 21 H 0.060 0.940 22 H 0.065 0.935 23 H 0.104 0.896 24 H 0.116 0.884 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.494 -16.275 0.129 18.842 hybrid contribution 0.666 0.754 0.066 1.008 sum 10.160 -15.520 0.196 18.551 Atomic orbital electron populations 1.69953 1.05954 1.26865 1.50610 1.24941 0.94914 0.99161 0.95174 0.86460 0.79698 0.82931 0.78140 1.20521 1.21101 1.19973 1.20880 0.92932 0.89601 1.50926 0.92749 1.17771 0.90573 0.86016 0.99248 1.25547 0.96374 0.95809 0.83910 1.70435 1.14434 1.09851 1.31697 1.24223 0.97596 0.96392 0.84236 1.50296 1.35127 1.27468 1.05444 1.78146 1.11065 1.04138 1.22667 1.22068 0.93373 0.86485 0.97090 1.21708 1.02304 0.95266 0.98191 1.20847 1.00896 1.00379 0.93887 1.21304 1.01647 0.94893 0.97777 1.20564 0.97274 0.91202 0.98450 0.92780 0.93997 0.93489 0.89598 0.88376 0.90941 0.89895 0.91723 0.91946 0.91366 0.90450 0.88160 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 22.51 29.54 -169.99 -5.02 17.49 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.50 -15.21 9.09 -34.44 -0.31 -15.52 16 8 H 0.05 1.66 7.74 -52.49 -0.41 1.26 16 9 C 0.10 2.95 5.60 -29.03 -0.16 2.79 16 10 C 0.26 6.82 7.34 -156.20 -1.15 5.67 16 11 N -0.54 -12.67 11.21 -7.87 -0.09 -12.76 16 12 C 0.25 4.70 7.00 -156.23 -1.09 3.60 16 13 N -0.39 -7.25 3.64 -57.17 -0.21 -7.45 16 14 N -0.33 -7.95 12.76 32.55 0.42 -7.54 16 15 C 0.13 1.63 6.79 -3.17 -0.02 1.61 16 16 C -0.14 -1.32 5.70 -27.46 -0.16 -1.48 16 17 C -0.12 -1.00 5.09 -28.79 -0.15 -1.15 16 18 C -0.12 -1.15 5.63 -27.43 -0.15 -1.31 16 19 C -0.03 -0.43 6.00 -26.94 -0.16 -0.59 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.04 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.05 1.39 8.14 -51.93 -0.42 0.96 16 23 H 0.09 0.85 7.88 -51.93 -0.41 0.44 16 24 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 25 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 26 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.42 7.69 -51.93 -0.40 0.03 16 29 H 0.07 0.82 7.91 -51.93 -0.41 0.41 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 LS Contribution 267.95 15.07 4.04 4.04 Total: -1.00 -34.97 267.95 -8.13 -43.10 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: -4.55 Total: -5.60 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -3.45 Total: -4.71 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.86 Total: -54.31 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.97 -8.13 -43.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282609.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.806 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds