Wall clock time and date at job start Mon Mar 30 2020 02:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.33597 * 125.51061 * 269.68513 * 10 9 7 12 12 C 1.30387 * 109.47183 * 179.97438 * 11 10 9 13 13 N 1.33547 * 108.24940 * 0.15166 * 12 11 10 14 14 N 1.31114 * 125.51452 * 90.00266 * 10 9 7 15 15 C 1.47515 * 125.11405 * 180.31934 * 13 12 11 16 16 C 1.53609 * 107.13893 * 293.72389 * 15 13 12 17 17 C 1.50915 * 111.10421 * 80.35692 * 16 15 13 18 18 C 1.50986 * 116.43617 * 287.70002 * 17 16 15 19 19 C 1.51974 * 127.26970 * 179.73621 * 12 11 10 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09005 * 109.92505 * 53.13048 * 15 13 12 24 24 H 1.09007 * 109.92290 * 174.31935 * 15 13 12 25 25 H 1.09000 * 109.15303 * 319.93606 * 16 15 13 26 26 H 1.09007 * 109.11054 * 200.74227 * 16 15 13 27 27 H 1.09000 * 108.06209 * 165.94358 * 17 16 15 28 28 H 1.09001 * 108.03136 * 49.42689 * 17 16 15 29 29 H 1.09004 * 109.17365 * 311.85893 * 18 17 16 30 30 H 1.09002 * 109.12842 * 192.61395 * 18 17 16 31 31 H 1.08996 * 109.95490 * 4.97615 * 19 12 11 32 32 H 1.08999 * 109.95123 * 126.15530 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7300 -4.2335 -1.1004 12 6 3.5462 -5.1859 -0.7444 13 7 3.5829 -5.2282 0.5899 14 7 2.7250 -4.2284 1.0543 15 6 4.3957 -6.1662 1.3872 16 6 3.8386 -7.5753 1.1349 17 6 4.3509 -8.1368 -0.1689 18 6 3.7830 -7.5322 -1.4305 19 6 4.3303 -6.1149 -1.6564 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 5.4376 -6.1167 1.0706 24 1 4.3161 -5.9195 2.4459 25 1 2.7501 -7.5287 1.1011 26 1 4.1432 -8.2309 1.9508 27 1 4.1404 -9.2062 -0.1822 28 1 5.4330 -8.0078 -0.1898 29 1 2.6969 -7.4878 -1.3488 30 1 4.0526 -8.1598 -2.2800 31 1 4.1877 -5.8224 -2.6967 32 1 5.3896 -6.0789 -1.4021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282609.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:42 Heat of formation + Delta-G solvation = 43.348375 kcal Electronic energy + Delta-G solvation = -14863.405108 eV Core-core repulsion = 12437.942814 eV Total energy + Delta-G solvation = -2425.462293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.16450 -38.19510 -35.48746 -34.57848 -33.09124 -31.25490 -30.42883 -26.97455 -25.57987 -24.83845 -21.53941 -21.36442 -20.77454 -18.65836 -17.96495 -16.69193 -16.58385 -15.88864 -15.68461 -15.05025 -14.69153 -14.46318 -14.13430 -13.82736 -13.54810 -13.36634 -12.79776 -12.69376 -12.52630 -12.40037 -12.06793 -11.78766 -11.75999 -11.63361 -11.46376 -10.87039 -10.65053 -10.62268 -10.04098 -8.26178 -6.38764 0.80681 1.37326 1.40925 1.51487 1.57973 2.05044 2.41477 3.05055 3.16284 3.61595 3.71644 3.78708 4.03266 4.08758 4.29227 4.35602 4.43157 4.57341 4.82361 4.85970 5.00360 5.09842 5.13548 5.20278 5.22369 5.35541 5.41555 5.51522 5.60208 5.64718 6.05329 6.13697 6.66368 7.28142 7.36898 8.85737 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055084 B = 0.006297 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.191903 B = 4445.431445 C = 4509.862234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.529 4.529 8 H 0.043 0.957 9 C 0.115 3.885 10 C 0.237 3.763 11 N -0.582 5.582 12 C 0.261 3.739 13 N -0.383 5.383 14 N -0.362 5.362 15 C 0.117 3.883 16 C -0.129 4.129 17 C -0.124 4.124 18 C -0.113 4.113 19 C -0.033 4.033 20 H 0.270 0.730 21 H 0.017 0.983 22 H 0.021 0.979 23 H 0.123 0.877 24 H 0.098 0.902 25 H 0.039 0.961 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.036 0.964 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.776 -18.107 -0.546 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.062 0.938 9 C 0.075 3.925 10 C -0.044 4.044 11 N -0.311 5.311 12 C -0.015 4.015 13 N -0.174 5.174 14 N -0.191 5.191 15 C -0.003 4.003 16 C -0.168 4.168 17 C -0.161 4.161 18 C -0.151 4.151 19 C -0.072 4.072 20 H 0.079 0.921 21 H 0.035 0.965 22 H 0.039 0.961 23 H 0.141 0.859 24 H 0.116 0.884 25 H 0.058 0.942 26 H 0.135 0.865 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.413 -17.795 -0.046 21.696 hybrid contribution -0.203 1.062 0.158 1.093 sum 12.210 -16.733 0.112 20.714 Atomic orbital electron populations 1.70066 1.07586 1.28391 1.50455 1.25920 0.95933 1.03109 0.93999 0.85295 0.78269 0.77727 0.78786 1.19249 1.19572 1.19549 1.21052 0.92503 0.90944 1.52319 0.93839 1.17347 0.90854 0.87599 0.96672 1.24901 0.97598 0.96439 0.85507 1.70300 1.16718 1.12154 1.31915 1.25353 0.95963 0.95179 0.85035 1.50626 1.34027 1.26496 1.06267 1.77927 1.12433 1.05779 1.22939 1.22753 0.94443 0.86452 0.96666 1.21722 1.00145 0.94059 1.00827 1.20876 1.02311 1.01223 0.91678 1.21336 0.99693 0.93772 1.00344 1.20986 0.98245 0.90901 0.97106 0.92100 0.96517 0.96114 0.85925 0.88356 0.94223 0.86454 0.89513 0.89066 0.94467 0.87075 0.87912 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 2 C 0.01 0.56 5.46 84.66 0.46 1.02 16 3 Si 0.98 46.69 29.54 68.60 2.03 48.71 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.53 -33.40 9.09 25.60 0.23 -33.17 16 8 H 0.04 2.76 7.74 -2.91 -0.02 2.74 16 9 C 0.11 7.03 5.60 29.10 0.16 7.20 16 10 C 0.24 12.93 7.34 138.40 1.02 13.94 16 11 N -0.58 -28.54 11.21 -178.82 -2.00 -30.54 16 12 C 0.26 9.59 7.00 139.04 0.97 10.57 16 13 N -0.38 -14.01 3.64 -334.77 -1.22 -15.23 16 14 N -0.36 -17.95 12.76 -50.94 -0.65 -18.60 16 15 C 0.12 2.56 6.79 86.39 0.59 3.15 16 16 C -0.13 -2.10 5.70 30.12 0.17 -1.93 16 17 C -0.12 -1.43 5.09 29.26 0.15 -1.28 16 18 C -0.11 -1.83 5.63 30.14 0.17 -1.66 16 19 C -0.03 -0.70 6.00 30.46 0.18 -0.52 16 20 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 21 H 0.02 1.06 8.14 -2.38 -0.02 1.05 16 22 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.12 1.84 7.88 -2.38 -0.02 1.83 16 24 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 25 H 0.04 0.92 8.08 -2.39 -0.02 0.90 16 26 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 28 H 0.09 0.63 7.69 -2.39 -0.02 0.61 16 29 H 0.04 0.84 7.91 -2.39 -0.02 0.82 16 30 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.12 1.78 7.90 -2.39 -0.02 1.76 16 Total: -1.00 -81.71 267.95 3.64 -78.07 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: 1.10 Total: -1.93 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.11 Total: -2.68 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -3.59 Total: -122.18 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -81.71 3.64 -78.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282609.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.418 kcal (2) G-P(sol) polarization free energy of solvation -81.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds