Wall clock time and date at job start Mon Mar 30 2020 03:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38615 * 120.44972 * 2 1 4 4 C 1.38581 * 118.40223 * 180.24907 * 3 2 1 5 5 C 1.50698 * 120.44842 * 179.72442 * 4 3 2 6 6 H 1.09006 * 109.46911 * 205.00582 * 5 4 3 7 7 C 1.50705 * 109.47176 * 325.00420 * 5 4 3 8 8 H 1.07995 * 120.00511 * 95.05096 * 7 5 4 9 9 C 1.37884 * 119.99682 * 275.05145 * 7 5 4 10 10 N 1.31513 * 119.99733 * 185.11143 * 9 7 5 11 11 Si 1.86796 * 120.00017 * 5.10835 * 9 7 5 12 12 H 1.48496 * 109.47242 * 84.81669 * 11 9 7 13 13 H 1.48503 * 109.46835 * 204.81529 * 11 9 7 14 14 H 1.48496 * 109.47384 * 324.81202 * 11 9 7 15 15 C 1.52996 * 109.47198 * 85.00371 * 5 4 3 16 16 N 1.46899 * 109.47001 * 65.36585 * 15 5 4 17 17 N 1.32346 * 119.09936 * 359.44878 * 4 3 2 18 18 C 1.31783 * 120.82253 * 0.56563 * 17 4 3 19 19 C 1.50694 * 119.12205 * 179.68434 * 18 17 4 20 20 N 1.31805 * 121.75049 * 359.70372 * 18 17 4 21 21 H 1.09005 * 109.47380 * 90.00111 * 1 2 3 22 22 H 1.09001 * 109.47619 * 209.99743 * 1 2 3 23 23 H 1.09006 * 109.47382 * 330.00177 * 1 2 3 24 24 H 1.08008 * 120.79880 * 359.97438 * 3 2 1 25 25 H 0.97003 * 120.00005 * 180.02562 * 10 9 7 26 26 H 1.08996 * 109.47340 * 185.36807 * 15 5 4 27 27 H 1.09005 * 109.46967 * 305.36612 * 15 5 4 28 28 H 1.00903 * 111.00170 * 56.04676 * 16 15 5 29 29 H 1.00904 * 110.99579 * 180.02562 * 16 15 5 30 30 H 1.09004 * 109.47423 * 270.02063 * 19 18 17 31 31 H 1.08996 * 109.47337 * 30.02223 * 19 18 17 32 32 H 1.09000 * 109.46969 * 150.02258 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5943 1.1455 -0.0053 5 6 4.4039 2.4165 -0.0118 6 1 5.3830 2.2214 -0.4495 7 6 3.6889 3.4634 -0.8266 8 1 3.0457 4.1810 -0.3391 9 6 3.8558 3.5050 -2.1947 10 7 3.3135 4.4778 -2.8940 11 14 4.8523 2.1796 -3.0547 12 1 3.9819 1.0097 -3.3355 13 1 5.3897 2.7146 -4.3315 14 1 5.9776 1.7610 -2.1809 15 6 4.5776 2.9179 1.4232 16 7 5.3856 1.9553 2.1838 17 7 4.1963 -0.0332 0.0010 18 6 3.4955 -1.1493 0.0009 19 6 4.2204 -2.4704 0.0010 20 7 2.1775 -1.1407 0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6899 2.1419 -0.0004 25 1 3.4306 4.5069 -3.8564 26 1 5.0799 3.8851 1.4119 27 1 3.5993 3.0221 1.8926 28 1 6.2735 1.7924 1.7329 29 1 5.5143 2.2639 3.1358 30 1 4.3956 -2.7888 -1.0267 31 1 5.1753 -2.3609 0.5151 32 1 3.6148 -3.2171 0.5144 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288056.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:13 Heat of formation + Delta-G solvation = 29.699491 kcal Electronic energy + Delta-G solvation = -15215.149588 eV Core-core repulsion = 12789.095434 eV Total energy + Delta-G solvation = -2426.054153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.29426 -35.86279 -33.70408 -32.71539 -32.19326 -29.23238 -28.69432 -26.96189 -24.07377 -22.80217 -21.42146 -19.50949 -17.32101 -16.49191 -15.35723 -15.15851 -14.58019 -14.36362 -13.85350 -13.60900 -13.30781 -12.99970 -12.59897 -12.42671 -12.21759 -11.92013 -11.83901 -11.46771 -11.29086 -10.85505 -10.32651 -10.07548 -9.86615 -9.31798 -9.28702 -8.80056 -8.38549 -8.36283 -8.02492 -6.27263 -4.30842 1.79333 1.98678 3.22377 3.29855 3.38270 4.28788 4.54811 4.56685 4.78503 5.06351 5.28739 5.31295 5.65219 5.84185 5.88382 5.91610 5.95144 5.99798 6.08863 6.15705 6.26324 6.43119 6.45999 6.58921 6.82330 7.12391 7.31381 7.47626 7.73932 7.95841 7.99989 8.30785 8.75676 9.00781 9.34343 10.83767 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.012445 C = 0.011417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.193230 B = 2249.402891 C = 2451.940052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.148 3.852 3 C -0.203 4.203 4 C 0.220 3.780 5 C 0.050 3.950 6 H 0.060 0.940 7 C -0.518 4.518 8 H 0.082 0.918 9 C 0.084 3.916 10 N -0.886 5.886 11 Si 0.863 3.137 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.254 1.254 15 C 0.085 3.915 16 N -0.852 5.852 17 N -0.520 5.520 18 C 0.297 3.703 19 C -0.076 4.076 20 N -0.544 5.544 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.148 0.852 25 H 0.267 0.733 26 H 0.033 0.967 27 H 0.061 0.939 28 H 0.338 0.662 29 H 0.327 0.673 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.152 -7.528 6.187 9.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.004 3.996 3 C -0.225 4.225 4 C 0.075 3.925 5 C 0.030 3.970 6 H 0.077 0.923 7 C -0.556 4.556 8 H 0.100 0.900 9 C -0.120 4.120 10 N -0.522 5.522 11 Si 0.690 3.310 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.179 1.179 15 C -0.046 4.046 16 N -0.380 5.380 17 N -0.236 5.236 18 C 0.028 3.972 19 C -0.134 4.134 20 N -0.261 5.261 21 H 0.095 0.905 22 H 0.091 0.909 23 H 0.094 0.906 24 H 0.165 0.835 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.320 -8.809 5.839 10.573 hybrid contribution 0.606 0.964 -0.654 1.314 sum 0.286 -7.845 5.185 9.408 Atomic orbital electron populations 1.20644 0.88931 1.02971 1.02918 1.21558 0.96892 0.88707 0.92444 1.22609 0.96543 0.99756 1.03584 1.22772 0.91988 0.93688 0.84055 1.18473 0.96328 0.88392 0.93845 0.92250 1.20785 1.29629 1.13576 0.91587 0.90009 1.24969 0.94759 0.94901 0.97402 1.69875 1.44102 1.30885 1.07382 0.87027 0.82027 0.82414 0.79502 1.20384 1.21141 1.17856 1.21718 0.96884 0.92307 0.93676 1.58777 1.22769 1.51129 1.05329 1.68148 1.41812 0.98405 1.15205 1.22991 0.86793 0.94827 0.92545 1.20396 0.99564 0.90675 1.02791 1.67878 1.09849 1.30647 1.17721 0.90529 0.90927 0.90587 0.83466 0.92273 0.94921 0.92048 0.85025 0.86246 0.90785 0.90190 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 10.22 36.00 0.37 -1.08 16 2 C 0.15 2.94 6.82 -82.25 -0.56 2.38 16 3 C -0.20 -4.42 8.95 -39.32 -0.35 -4.77 16 4 C 0.22 5.06 4.53 -82.25 -0.37 4.69 16 5 C 0.05 1.15 1.86 -92.92 -0.17 0.98 16 6 H 0.06 1.45 5.74 -51.93 -0.30 1.15 16 7 C -0.52 -13.59 7.52 -34.44 -0.26 -13.85 16 8 H 0.08 2.27 8.05 -52.49 -0.42 1.84 16 9 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 10 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 11 Si 0.86 21.86 26.84 -169.99 -4.56 17.29 16 12 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 14 H -0.25 -6.27 6.14 56.52 0.35 -5.92 16 15 C 0.09 1.67 6.14 -3.83 -0.02 1.64 16 16 N -0.85 -14.53 9.35 -10.37 -0.10 -14.63 16 17 N -0.52 -11.64 10.27 -6.99 -0.07 -11.71 16 18 C 0.30 6.06 7.64 -157.20 -1.20 4.86 16 19 C -0.08 -1.17 10.32 36.00 0.37 -0.79 16 20 N -0.54 -11.09 10.27 -6.99 -0.07 -11.16 16 21 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 24 H 0.15 3.16 7.30 -52.48 -0.38 2.78 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.34 5.57 8.99 -39.29 -0.35 5.22 16 29 H 0.33 4.61 9.08 -39.29 -0.36 4.25 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 273.07 15.07 4.12 4.12 Total: -1.00 -30.81 273.07 -6.60 -37.41 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.38 Total: 7.48 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.30 Total: -3.71 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.53 Total: -62.59 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.56 Total: 17.29 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.81 -6.60 -37.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288056.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.112 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds