Wall clock time and date at job start Mon Mar 30 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00196 * 2 1 4 4 H 1.48493 * 109.47477 * 270.00223 * 3 2 1 5 5 H 1.48510 * 109.47101 * 30.00431 * 3 2 1 6 6 H 1.48504 * 109.46968 * 150.00159 * 3 2 1 7 7 C 1.37875 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99926 * 185.31856 * 7 2 1 9 9 C 1.50698 * 120.00373 * 5.31648 * 7 2 1 10 10 H 1.09000 * 109.47148 * 325.98830 * 9 7 2 11 11 C 1.53001 * 109.47067 * 205.99053 * 9 7 2 12 12 N 1.46894 * 109.47220 * 65.42084 * 11 9 7 13 13 C 1.50700 * 109.47090 * 85.98774 * 9 7 2 14 14 C 1.39783 * 125.89397 * 34.72244 * 13 9 7 15 15 C 1.35541 * 107.89613 * 179.84919 * 14 13 9 16 16 N 1.34720 * 107.88089 * 0.31768 * 15 14 13 17 17 N 1.30704 * 125.89397 * 215.02131 * 13 9 7 18 18 C 1.47139 * 111.00894 * 179.97438 * 16 15 14 19 19 C 1.54366 * 105.57195 * 342.87459 * 18 16 15 20 20 C 1.51418 * 141.97370 * 179.81014 * 15 14 13 21 21 H 0.97010 * 119.99939 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46960 * 185.41372 * 11 9 7 23 23 H 1.09000 * 109.47364 * 305.41459 * 11 9 7 24 24 H 1.00898 * 111.00424 * 174.06675 * 12 11 9 25 25 H 1.00900 * 110.99810 * 298.01458 * 12 11 9 26 26 H 1.08001 * 126.05333 * 359.97438 * 14 13 9 27 27 H 1.09008 * 110.22542 * 101.88172 * 18 16 15 28 28 H 1.08993 * 110.22860 * 223.83147 * 18 16 15 29 29 H 1.08995 * 110.96448 * 267.59647 * 19 18 16 30 30 H 1.09001 * 110.97663 * 143.83660 * 19 18 16 31 31 H 1.09000 * 110.48748 * 315.69981 * 20 15 14 32 32 H 1.08996 * 110.48672 * 78.34868 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0809 -1.1962 0.0862 9 6 1.2558 -2.4963 -0.1220 10 1 0.2930 -2.4103 0.3817 11 6 2.0722 -3.6163 0.5260 12 7 2.1779 -3.3722 1.9707 13 6 1.0341 -2.8143 -1.5783 14 6 1.9151 -2.5239 -2.6239 15 6 1.3565 -2.9702 -3.7754 16 7 0.1631 -3.5164 -3.4716 17 7 -0.0177 -3.4043 -2.0824 18 6 -0.5068 -4.0253 -4.6788 19 6 0.2121 -3.3513 -5.8670 20 6 1.6056 -3.0574 -5.2664 21 1 -0.4850 0.8401 0.0004 22 1 1.5777 -4.5724 0.3544 23 1 3.0698 -3.6393 0.0874 24 1 2.6287 -4.1456 2.4361 25 1 2.6619 -2.5066 2.1567 26 1 2.8725 -2.0328 -2.5306 27 1 -0.4011 -5.1086 -4.7401 28 1 -1.5610 -3.7488 -4.6698 29 1 -0.2912 -2.4283 -6.1545 30 1 0.2883 -4.0326 -6.7144 31 1 1.9921 -2.1111 -5.6447 32 1 2.2966 -3.8699 -5.4909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261288675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:21 Heat of formation + Delta-G solvation = 80.701663 kcal Electronic energy + Delta-G solvation = -15036.299579 eV Core-core repulsion = 12612.457046 eV Total energy + Delta-G solvation = -2423.842533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.74053 -36.24764 -34.42528 -32.20352 -30.25882 -29.33377 -27.52107 -25.73045 -24.27076 -21.68879 -20.70565 -19.20523 -18.29020 -16.32866 -16.04814 -15.12599 -14.82737 -14.44020 -13.85954 -13.57779 -13.06088 -12.87077 -12.55915 -12.29367 -11.83835 -11.53623 -11.37471 -11.24692 -10.94854 -10.82672 -10.51049 -10.48640 -9.62682 -9.40644 -9.01867 -8.41209 -8.00254 -7.63253 -7.44141 -5.97500 -4.02650 2.78247 3.17459 3.34450 3.40413 3.41740 4.01848 4.44172 4.47050 4.83296 4.87760 5.21374 5.32145 5.53343 5.63606 5.68903 5.71676 5.90145 6.05716 6.26074 6.40441 6.51585 6.71459 6.90453 7.04273 7.19943 7.68628 7.82284 7.85823 8.00465 8.23408 8.34726 8.49254 9.00819 9.06357 9.61580 11.11303 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.009864 C = 0.008147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.644968 B = 2837.831458 C = 3435.823383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.072 3.928 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.110 3.890 10 H 0.076 0.924 11 C 0.085 3.915 12 N -0.842 5.842 13 C 0.136 3.864 14 C -0.225 4.225 15 C 0.022 3.978 16 N -0.416 5.416 17 N -0.295 5.295 18 C 0.136 3.864 19 C -0.132 4.132 20 C -0.059 4.059 21 H 0.261 0.739 22 H 0.043 0.957 23 H 0.011 0.989 24 H 0.318 0.682 25 H 0.348 0.652 26 H 0.135 0.865 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 -6.090 -9.592 11.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.132 4.132 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.089 3.911 10 H 0.094 0.906 11 C -0.047 4.047 12 N -0.371 5.371 13 C -0.032 4.032 14 C -0.255 4.255 15 C -0.104 4.104 16 N -0.199 5.199 17 N -0.114 5.114 18 C 0.014 3.986 19 C -0.171 4.171 20 C -0.098 4.098 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.029 0.971 24 H 0.129 0.871 25 H 0.162 0.838 26 H 0.153 0.847 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.007 -6.588 -9.373 11.501 hybrid contribution 2.149 1.403 -0.597 2.635 sum 3.156 -5.185 -9.970 11.672 Atomic orbital electron populations 1.69983 1.06030 1.26577 1.48491 1.24994 0.94698 0.99153 0.94333 0.86660 0.79935 0.83742 0.78028 1.20762 1.21321 1.19784 1.20817 0.92810 0.89848 1.51043 0.92623 1.17418 0.98672 0.92215 0.82830 0.90600 1.21653 0.97392 0.97995 0.87611 1.58581 1.60980 1.06947 1.10562 1.23600 0.89031 0.91470 0.99086 1.20561 1.03875 1.11473 0.89598 1.22037 0.90971 1.01907 0.95535 1.50065 1.16027 1.48264 1.05525 1.77454 1.24010 1.26399 0.83586 1.21994 0.97638 0.98358 0.80590 1.22746 0.95822 1.01700 0.96824 1.20717 0.96983 1.03009 0.89116 0.92939 0.93840 0.97113 0.87147 0.83788 0.84689 0.90723 0.90170 0.90017 0.89002 0.89681 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 12.91 55.43 0.72 -25.43 16 2 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.51 -13.66 6.80 -34.44 -0.23 -13.89 16 8 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.11 2.87 2.46 -92.92 -0.23 2.64 16 10 H 0.08 2.29 7.50 -51.93 -0.39 1.90 16 11 C 0.09 1.89 6.19 -3.83 -0.02 1.87 16 12 N -0.84 -17.03 9.57 -10.37 -0.10 -17.13 16 13 C 0.14 3.48 6.12 -82.49 -0.50 2.97 16 14 C -0.23 -5.24 10.02 -39.97 -0.40 -5.64 16 15 C 0.02 0.44 7.49 -81.94 -0.61 -0.17 16 16 N -0.42 -8.71 4.85 -55.73 -0.27 -8.98 16 17 N -0.30 -7.52 12.70 33.63 0.43 -7.09 16 18 C 0.14 1.97 7.78 -2.98 -0.02 1.95 16 19 C -0.13 -1.47 7.17 -25.20 -0.18 -1.65 16 20 C -0.06 -0.80 6.86 -26.71 -0.18 -0.98 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.32 5.27 9.08 -39.29 -0.36 4.92 16 25 H 0.35 7.11 8.25 -39.29 -0.32 6.79 16 26 H 0.14 3.02 7.99 -52.49 -0.42 2.60 16 27 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 271.31 15.07 4.09 4.09 Total: -1.00 -33.19 271.31 -7.07 -40.25 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -4.42 Total: 8.98 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.49 Total: -10.98 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.77 Total: -58.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.19 -7.07 -40.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.954 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds