Wall clock time and date at job start Mon Mar 30 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00196 * 2 1 4 4 H 1.48493 * 109.47477 * 270.00223 * 3 2 1 5 5 H 1.48510 * 109.47101 * 30.00431 * 3 2 1 6 6 H 1.48504 * 109.46968 * 150.00159 * 3 2 1 7 7 C 1.37875 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99926 * 185.31856 * 7 2 1 9 9 C 1.50698 * 120.00373 * 5.31648 * 7 2 1 10 10 H 1.09000 * 109.47148 * 325.98830 * 9 7 2 11 11 C 1.53001 * 109.47067 * 205.99053 * 9 7 2 12 12 N 1.46894 * 109.47220 * 65.42084 * 11 9 7 13 13 C 1.50700 * 109.47090 * 85.98774 * 9 7 2 14 14 C 1.39783 * 125.89397 * 34.72244 * 13 9 7 15 15 C 1.35541 * 107.89613 * 179.84919 * 14 13 9 16 16 N 1.34720 * 107.88089 * 0.31768 * 15 14 13 17 17 N 1.30704 * 125.89397 * 215.02131 * 13 9 7 18 18 C 1.47139 * 111.00894 * 179.97438 * 16 15 14 19 19 C 1.54366 * 105.57195 * 342.87459 * 18 16 15 20 20 C 1.51418 * 141.97370 * 179.81014 * 15 14 13 21 21 H 0.97010 * 119.99939 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46960 * 185.41372 * 11 9 7 23 23 H 1.09000 * 109.47364 * 305.41459 * 11 9 7 24 24 H 1.00898 * 111.00424 * 174.06675 * 12 11 9 25 25 H 1.00900 * 110.99810 * 298.01458 * 12 11 9 26 26 H 1.08001 * 126.05333 * 359.97438 * 14 13 9 27 27 H 1.09008 * 110.22542 * 101.88172 * 18 16 15 28 28 H 1.08993 * 110.22860 * 223.83147 * 18 16 15 29 29 H 1.08995 * 110.96448 * 267.59647 * 19 18 16 30 30 H 1.09001 * 110.97663 * 143.83660 * 19 18 16 31 31 H 1.09000 * 110.48748 * 315.69981 * 20 15 14 32 32 H 1.08996 * 110.48672 * 78.34868 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0809 -1.1962 0.0862 9 6 1.2558 -2.4963 -0.1220 10 1 0.2930 -2.4103 0.3817 11 6 2.0722 -3.6163 0.5260 12 7 2.1779 -3.3722 1.9707 13 6 1.0341 -2.8143 -1.5783 14 6 1.9151 -2.5239 -2.6239 15 6 1.3565 -2.9702 -3.7754 16 7 0.1631 -3.5164 -3.4716 17 7 -0.0177 -3.4043 -2.0824 18 6 -0.5068 -4.0253 -4.6788 19 6 0.2121 -3.3513 -5.8670 20 6 1.6056 -3.0574 -5.2664 21 1 -0.4850 0.8401 0.0004 22 1 1.5777 -4.5724 0.3544 23 1 3.0698 -3.6393 0.0874 24 1 2.6287 -4.1456 2.4361 25 1 2.6619 -2.5066 2.1567 26 1 2.8725 -2.0328 -2.5306 27 1 -0.4011 -5.1086 -4.7401 28 1 -1.5610 -3.7488 -4.6698 29 1 -0.2912 -2.4283 -6.1545 30 1 0.2883 -4.0326 -6.7144 31 1 1.9921 -2.1111 -5.6447 32 1 2.2966 -3.8699 -5.4909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:21 Heat of formation + Delta-G solvation = 55.429948 kcal Electronic energy + Delta-G solvation = -15037.395443 eV Core-core repulsion = 12612.457046 eV Total energy + Delta-G solvation = -2424.938397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.32853 -37.83102 -36.06316 -34.22190 -31.80738 -30.94948 -29.18398 -27.18762 -26.28003 -23.15485 -22.17186 -20.86498 -20.03347 -18.33270 -17.35032 -16.69188 -16.57584 -16.28042 -15.65467 -15.00627 -14.45447 -14.37532 -13.95008 -13.78593 -13.44952 -13.40088 -13.00913 -12.83006 -12.40658 -12.38912 -12.27961 -11.93455 -11.53026 -11.26162 -10.99942 -10.53633 -9.69611 -9.33177 -9.12992 -8.09423 -6.20527 1.16849 1.42967 1.43984 1.54263 1.76262 2.19754 2.45761 3.23530 3.32000 3.71898 3.94505 3.99815 4.15067 4.37360 4.55164 4.59540 4.63580 4.74454 4.86943 4.95971 5.06775 5.12019 5.17386 5.25747 5.43021 5.65322 5.81716 6.06540 6.21676 6.39240 6.51039 6.90740 6.96426 7.24468 7.47413 9.00418 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.009864 C = 0.008147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.644968 B = 2837.831458 C = 3435.823383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.110 3.890 10 H 0.023 0.977 11 C 0.097 3.903 12 N -0.847 5.847 13 C 0.113 3.887 14 C -0.271 4.271 15 C 0.039 3.961 16 N -0.418 5.418 17 N -0.348 5.348 18 C 0.116 3.884 19 C -0.114 4.114 20 C -0.058 4.058 21 H 0.257 0.743 22 H 0.042 0.958 23 H 0.021 0.979 24 H 0.342 0.658 25 H 0.348 0.652 26 H 0.133 0.867 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.142 0.858 31 H 0.102 0.898 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.757 -6.513 -12.178 14.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.782 3.218 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.089 3.911 10 H 0.041 0.959 11 C -0.035 4.035 12 N -0.378 5.378 13 C -0.052 4.052 14 C -0.300 4.300 15 C -0.090 4.090 16 N -0.201 5.201 17 N -0.169 5.169 18 C -0.003 4.003 19 C -0.152 4.152 20 C -0.096 4.096 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.039 0.961 24 H 0.155 0.845 25 H 0.162 0.838 26 H 0.151 0.849 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.160 0.840 31 H 0.120 0.880 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.427 -7.041 -11.949 14.080 hybrid contribution 1.654 1.392 0.120 2.165 sum 4.081 -5.649 -11.829 13.729 Atomic orbital electron populations 1.70168 1.07925 1.27049 1.50829 1.25825 0.95347 1.02858 0.94269 0.85580 0.79083 0.79123 0.78016 1.20560 1.21550 1.17954 1.21063 0.93035 0.90342 1.49637 0.91876 1.17258 0.96438 0.93590 0.83804 0.95908 1.21437 0.97092 0.96501 0.88487 1.58477 1.61717 1.07995 1.09616 1.23407 0.90093 0.92623 0.99124 1.20626 1.04412 1.14373 0.90629 1.22940 0.89590 0.98346 0.98122 1.50525 1.17072 1.47412 1.05102 1.77248 1.24687 1.28147 0.86862 1.22656 0.98135 1.00284 0.79264 1.22847 0.93220 1.02763 0.96352 1.21031 0.99284 1.05217 0.84075 0.93391 0.93970 0.96100 0.84550 0.83837 0.84911 0.88212 0.89863 0.89621 0.83971 0.88001 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.48 12.91 21.45 0.28 -57.21 16 2 C 0.02 0.94 5.45 84.65 0.46 1.40 16 3 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.50 -27.77 6.80 25.60 0.17 -27.59 16 8 H 0.06 3.31 7.82 -2.91 -0.02 3.29 16 9 C 0.11 6.03 2.46 -12.29 -0.03 6.00 16 10 H 0.02 1.47 7.50 -2.39 -0.02 1.45 16 11 C 0.10 4.41 6.19 86.30 0.53 4.94 16 12 N -0.85 -34.56 9.57 -186.72 -1.79 -36.35 16 13 C 0.11 6.03 6.12 43.10 0.26 6.30 16 14 C -0.27 -12.77 10.02 22.02 0.22 -12.55 16 15 C 0.04 1.51 7.49 41.72 0.31 1.82 16 16 N -0.42 -17.19 4.85 -330.22 -1.60 -18.79 16 17 N -0.35 -18.34 12.70 -47.50 -0.60 -18.95 16 18 C 0.12 3.01 7.78 86.72 0.67 3.68 16 19 C -0.11 -1.93 7.17 31.59 0.23 -1.71 16 20 C -0.06 -1.30 6.86 30.60 0.21 -1.09 16 21 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 22 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.34 11.09 9.08 -89.70 -0.81 10.28 16 25 H 0.35 14.28 8.25 -89.69 -0.74 13.54 16 26 H 0.13 6.06 7.99 -2.91 -0.02 6.04 16 27 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -77.10 271.31 0.94 -76.17 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.42 Total: 27.45 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 3.05 Total: -18.79 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -3.72 Total: -131.29 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -77.10 0.94 -76.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.596 kcal (2) G-P(sol) polarization free energy of solvation -77.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds