Wall clock time and date at job start Mon Mar 30 2020 03:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39771 * 125.83796 * 2 1 4 4 C 1.36170 * 107.81351 * 180.16205 * 3 2 1 5 5 N 1.39203 * 126.21938 * 179.84437 * 4 3 2 6 6 C 1.47899 * 111.00116 * 299.83824 * 5 4 3 7 7 C 1.53993 * 107.06087 * 145.84479 * 6 5 4 8 8 C 1.54604 * 105.14024 * 358.77676 * 7 6 5 9 9 H 1.08999 * 110.72148 * 96.57361 * 8 7 6 10 10 C 1.50697 * 110.72409 * 219.68564 * 8 7 6 11 11 H 1.08003 * 119.99778 * 112.76079 * 10 8 7 12 12 C 1.37870 * 120.00061 * 292.75619 * 10 8 7 13 13 N 1.31516 * 120.00239 * 353.60371 * 12 10 8 14 14 Si 1.86805 * 120.00320 * 173.60379 * 12 10 8 15 15 H 1.48499 * 109.46715 * 265.18326 * 14 12 10 16 16 H 1.48494 * 109.47594 * 145.18262 * 14 12 10 17 17 H 1.48502 * 109.46742 * 25.17687 * 14 12 10 18 18 C 1.48733 * 111.04391 * 57.41659 * 5 4 3 19 19 N 1.35243 * 107.55552 * 359.57998 * 4 3 2 20 20 H 0.97006 * 126.03755 * 180.26461 * 19 4 3 21 21 N 1.30843 * 125.83642 * 179.69108 * 2 1 3 22 22 H 1.08993 * 109.47237 * 270.27937 * 1 2 3 23 23 H 1.08995 * 109.47342 * 30.28647 * 1 2 3 24 24 H 1.09003 * 109.46681 * 150.28085 * 1 2 3 25 25 H 1.08004 * 126.08951 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.91727 * 26.49507 * 6 5 4 27 27 H 1.09001 * 109.91807 * 265.19841 * 6 5 4 28 28 H 1.08998 * 110.31346 * 239.86148 * 7 6 5 29 29 H 1.08998 * 110.31161 * 117.69063 * 7 6 5 30 30 H 0.97000 * 120.00176 * 180.02562 * 13 12 10 31 31 H 1.09003 * 110.83696 * 81.96144 * 18 5 4 32 32 H 1.08994 * 110.58530 * 318.76780 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3254 1.1331 0.0000 4 6 3.6203 0.7118 -0.0037 5 7 4.7499 1.5252 -0.0080 6 6 4.7749 2.3913 -1.2066 7 6 5.4159 3.7267 -0.7857 8 6 5.7195 3.5714 0.7223 9 1 6.7557 3.2710 0.8781 10 6 5.4201 4.8503 1.4610 11 1 4.6073 4.8859 2.1713 12 6 6.1838 5.9747 1.2303 13 7 7.2492 5.8999 0.4628 14 14 5.7055 7.6045 2.0078 15 1 4.8893 8.3902 1.0477 16 1 6.9320 8.3665 2.3544 17 1 4.9148 7.3522 3.2392 18 6 4.7502 2.4450 1.1608 19 7 3.6093 -0.6406 0.0036 20 1 4.3890 -1.2177 0.0067 21 7 2.2731 -1.0607 0.0057 22 1 -0.3633 0.0050 1.0276 23 1 -0.3634 0.8873 -0.5182 24 1 -0.3633 -0.8925 -0.5095 25 1 1.9904 2.1598 0.0004 26 1 3.7588 2.5629 -1.5619 27 1 5.3712 1.9238 -1.9901 28 1 4.7191 4.5489 -0.9485 29 1 6.3380 3.8956 -1.3418 30 1 7.7868 6.6909 0.3008 31 1 5.1248 1.9402 2.0514 32 1 3.7508 2.8436 1.3350 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:11 Heat of formation + Delta-G solvation = 72.553073 kcal Electronic energy + Delta-G solvation = -14861.934824 eV Core-core repulsion = 12437.738941 eV Total energy + Delta-G solvation = -2424.195883 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.10316 -37.90655 -33.43076 -32.50897 -30.73435 -28.40131 -27.87547 -27.57770 -24.54107 -21.73158 -19.82273 -19.69529 -19.48658 -17.73764 -16.12762 -15.23680 -14.77029 -14.51028 -14.25100 -13.43112 -13.27365 -12.97718 -12.65535 -12.55656 -12.14952 -11.80712 -11.64769 -11.20969 -10.91259 -10.68245 -10.47523 -10.31063 -9.80488 -9.46860 -9.01839 -8.92106 -8.45840 -8.24611 -8.22909 -6.09404 -4.12170 2.05610 2.92064 2.94084 3.26910 3.34717 3.37576 4.35317 4.49279 4.96149 5.17204 5.24291 5.61419 5.64497 5.75623 5.83082 5.89369 5.96767 6.06378 6.18219 6.29127 6.41996 6.64773 6.83357 6.88691 7.00197 7.22517 7.27321 7.49619 7.69159 7.78235 7.92581 8.07652 8.33943 8.90418 9.52262 11.00821 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046277 B = 0.006658 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.911684 B = 4204.433806 C = 4519.888191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.078 3.922 3 C -0.303 4.303 4 C 0.280 3.720 5 N -0.489 5.489 6 C 0.048 3.952 7 C -0.109 4.109 8 C 0.054 3.946 9 H 0.045 0.955 10 C -0.518 4.518 11 H 0.058 0.942 12 C 0.066 3.934 13 N -0.886 5.886 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.055 3.945 19 N -0.465 5.465 20 H 0.436 0.564 21 N -0.303 5.303 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.145 0.855 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.261 0.739 31 H 0.067 0.933 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.250 -7.933 -2.171 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.334 4.334 4 C 0.057 3.943 5 N -0.213 5.213 6 C -0.078 4.078 7 C -0.148 4.148 8 C 0.034 3.966 9 H 0.063 0.937 10 C -0.556 4.556 11 H 0.076 0.924 12 C -0.136 4.136 13 N -0.524 5.524 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.070 4.070 19 N -0.174 5.174 20 H 0.280 0.720 21 N -0.128 5.128 22 H 0.093 0.907 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.163 0.837 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.631 -9.426 -2.232 12.332 hybrid contribution -0.338 1.992 0.307 2.044 sum -7.969 -7.433 -1.925 11.067 Atomic orbital electron populations 1.20153 0.87030 1.02994 1.02782 1.22110 0.96756 0.90796 0.99100 1.21507 0.91949 0.99985 1.19960 1.19637 0.91604 0.85236 0.97827 1.61592 1.32871 1.20846 1.06005 1.23029 0.99795 0.94307 0.90696 1.22454 0.99658 0.92510 1.00143 1.19572 0.94714 0.91510 0.90777 0.93707 1.21035 1.15771 0.94708 1.24135 0.92406 1.24954 0.94477 0.99012 0.95192 1.69973 1.15062 1.29319 1.38033 0.86608 0.78067 0.83894 0.79633 1.20671 1.21224 1.19814 1.23569 1.00697 0.92492 0.90259 1.46309 1.07083 1.04732 1.59256 0.71980 1.77225 0.86052 1.22117 1.27436 0.90677 0.90542 0.91195 0.83695 0.93881 0.91554 0.92171 0.91846 0.92909 0.91408 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.44 36.01 0.38 -0.40 16 2 C 0.08 1.20 7.21 -82.44 -0.59 0.60 16 3 C -0.30 -5.07 9.02 -39.75 -0.36 -5.43 16 4 C 0.28 4.91 6.18 -153.42 -0.95 3.96 16 5 N -0.49 -9.21 5.37 -169.11 -0.91 -10.12 16 6 C 0.05 0.90 6.60 -2.76 -0.02 0.88 16 7 C -0.11 -2.40 6.04 -25.37 -0.15 -2.55 16 8 C 0.05 1.29 2.83 -89.90 -0.25 1.03 16 9 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 10 C -0.52 -13.66 8.36 -34.44 -0.29 -13.94 16 11 H 0.06 1.51 7.77 -52.48 -0.41 1.10 16 12 C 0.07 1.78 5.32 -17.82 -0.09 1.68 16 13 N -0.89 -24.77 13.00 55.43 0.72 -24.05 16 14 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.06 1.14 5.91 -1.78 -0.01 1.13 16 19 N -0.47 -7.42 7.37 31.10 0.23 -7.19 16 20 H 0.44 5.84 8.96 -182.62 -1.64 4.21 16 21 N -0.30 -4.94 12.69 33.65 0.43 -4.51 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.15 2.36 7.94 -52.48 -0.42 1.95 16 26 H 0.04 0.77 7.13 -51.93 -0.37 0.40 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.38 7.84 -51.93 -0.41 0.97 16 29 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.05 1.01 7.15 -51.93 -0.37 0.64 16 LS Contribution 269.31 15.07 4.06 4.06 Total: -1.00 -28.56 269.31 -8.54 -37.10 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.70 Total: 2.10 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.34 Total: -13.02 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.47 Total: -45.87 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.56 -8.54 -37.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.653 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds