Wall clock time and date at job start Mon Mar 30 2020 03:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39771 * 125.83796 * 2 1 4 4 C 1.36170 * 107.81351 * 180.16205 * 3 2 1 5 5 N 1.39203 * 126.21938 * 179.84437 * 4 3 2 6 6 C 1.47899 * 111.00116 * 299.83824 * 5 4 3 7 7 C 1.53993 * 107.06087 * 145.84479 * 6 5 4 8 8 C 1.54604 * 105.14024 * 358.77676 * 7 6 5 9 9 H 1.08999 * 110.72148 * 96.57361 * 8 7 6 10 10 C 1.50697 * 110.72409 * 219.68564 * 8 7 6 11 11 H 1.08003 * 119.99778 * 112.76079 * 10 8 7 12 12 C 1.37870 * 120.00061 * 292.75619 * 10 8 7 13 13 N 1.31516 * 120.00239 * 353.60371 * 12 10 8 14 14 Si 1.86805 * 120.00320 * 173.60379 * 12 10 8 15 15 H 1.48499 * 109.46715 * 265.18326 * 14 12 10 16 16 H 1.48494 * 109.47594 * 145.18262 * 14 12 10 17 17 H 1.48502 * 109.46742 * 25.17687 * 14 12 10 18 18 C 1.48733 * 111.04391 * 57.41659 * 5 4 3 19 19 N 1.35243 * 107.55552 * 359.57998 * 4 3 2 20 20 H 0.97006 * 126.03755 * 180.26461 * 19 4 3 21 21 N 1.30843 * 125.83642 * 179.69108 * 2 1 3 22 22 H 1.08993 * 109.47237 * 270.27937 * 1 2 3 23 23 H 1.08995 * 109.47342 * 30.28647 * 1 2 3 24 24 H 1.09003 * 109.46681 * 150.28085 * 1 2 3 25 25 H 1.08004 * 126.08951 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.91727 * 26.49507 * 6 5 4 27 27 H 1.09001 * 109.91807 * 265.19841 * 6 5 4 28 28 H 1.08998 * 110.31346 * 239.86148 * 7 6 5 29 29 H 1.08998 * 110.31161 * 117.69063 * 7 6 5 30 30 H 0.97000 * 120.00176 * 180.02562 * 13 12 10 31 31 H 1.09003 * 110.83696 * 81.96144 * 18 5 4 32 32 H 1.08994 * 110.58530 * 318.76780 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3254 1.1331 0.0000 4 6 3.6203 0.7118 -0.0037 5 7 4.7499 1.5252 -0.0080 6 6 4.7749 2.3913 -1.2066 7 6 5.4159 3.7267 -0.7857 8 6 5.7195 3.5714 0.7223 9 1 6.7557 3.2710 0.8781 10 6 5.4201 4.8503 1.4610 11 1 4.6073 4.8859 2.1713 12 6 6.1838 5.9747 1.2303 13 7 7.2492 5.8999 0.4628 14 14 5.7055 7.6045 2.0078 15 1 4.8893 8.3902 1.0477 16 1 6.9320 8.3665 2.3544 17 1 4.9148 7.3522 3.2392 18 6 4.7502 2.4450 1.1608 19 7 3.6093 -0.6406 0.0036 20 1 4.3890 -1.2177 0.0067 21 7 2.2731 -1.0607 0.0057 22 1 -0.3633 0.0050 1.0276 23 1 -0.3634 0.8873 -0.5182 24 1 -0.3633 -0.8925 -0.5095 25 1 1.9904 2.1598 0.0004 26 1 3.7588 2.5629 -1.5619 27 1 5.3712 1.9238 -1.9901 28 1 4.7191 4.5489 -0.9485 29 1 6.3380 3.8956 -1.3418 30 1 7.7868 6.6909 0.3008 31 1 5.1248 1.9402 2.0514 32 1 3.7508 2.8436 1.3350 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:10 Heat of formation + Delta-G solvation = 54.490853 kcal Electronic energy + Delta-G solvation = -14862.718060 eV Core-core repulsion = 12437.738941 eV Total energy + Delta-G solvation = -2424.979119 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.39295 -39.50102 -35.23732 -33.80823 -32.39344 -30.12050 -29.22254 -28.70536 -26.47054 -23.27890 -21.51142 -21.11766 -20.80841 -19.23112 -17.99918 -16.83684 -16.40294 -16.09735 -15.71601 -14.81467 -14.68263 -14.29923 -14.06338 -13.76201 -13.46286 -13.35809 -13.14591 -13.03720 -12.64887 -12.51448 -12.24565 -11.66801 -11.61709 -11.29153 -10.88558 -10.50419 -10.23122 -9.74529 -9.57575 -8.14615 -6.23611 0.75326 1.43423 1.45235 1.54888 1.68392 1.70442 2.44154 3.07813 3.18481 3.79969 3.89655 4.21444 4.26917 4.37426 4.53892 4.59965 4.74292 4.80999 4.87312 4.89497 4.99575 5.12739 5.14052 5.26239 5.54063 5.60511 5.62289 5.77066 5.90912 5.94189 6.33244 6.44224 6.80416 6.85581 7.44196 8.95590 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046277 B = 0.006658 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.911684 B = 4204.433806 C = 4519.888191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.078 3.922 3 C -0.309 4.309 4 C 0.262 3.738 5 N -0.487 5.487 6 C 0.058 3.942 7 C -0.099 4.099 8 C 0.046 3.954 9 H 0.011 0.989 10 C -0.532 4.532 11 H 0.057 0.943 12 C 0.018 3.982 13 N -0.918 5.918 14 Si 0.953 3.047 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.267 1.267 18 C 0.069 3.931 19 N -0.462 5.462 20 H 0.445 0.555 21 N -0.313 5.313 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.148 0.852 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.262 0.738 31 H 0.069 0.931 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.010 -8.279 -2.129 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.340 4.340 4 C 0.039 3.961 5 N -0.211 5.211 6 C -0.068 4.068 7 C -0.138 4.138 8 C 0.027 3.973 9 H 0.029 0.971 10 C -0.570 4.570 11 H 0.076 0.924 12 C -0.181 4.181 13 N -0.557 5.557 14 Si 0.779 3.221 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.191 1.191 18 C -0.057 4.057 19 N -0.171 5.171 20 H 0.291 0.709 21 N -0.139 5.139 22 H 0.107 0.893 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.165 0.835 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.396 -9.796 -2.190 13.749 hybrid contribution 0.198 2.051 0.300 2.082 sum -9.199 -7.745 -1.890 12.172 Atomic orbital electron populations 1.20328 0.83992 1.04434 1.04125 1.22744 0.98644 0.89738 0.97625 1.21687 0.91958 1.00669 1.19711 1.19590 0.91360 0.85700 0.99475 1.61475 1.34039 1.20428 1.05143 1.22919 1.00397 0.92499 0.90989 1.22224 0.98744 0.94195 0.98653 1.19483 0.93655 0.92035 0.92157 0.97089 1.21365 1.15616 0.95836 1.24223 0.92442 1.25705 0.94388 1.02272 0.95769 1.70089 1.16041 1.30149 1.39390 0.85619 0.77720 0.79816 0.78986 1.20055 1.21157 1.19123 1.23293 0.99582 0.91791 0.91032 1.46320 1.07561 1.04272 1.58971 0.70940 1.77231 0.86144 1.22725 1.27802 0.89263 0.88913 0.89989 0.83453 0.92580 0.89985 0.93384 0.93661 0.92917 0.91273 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.44 71.24 0.74 -0.56 16 2 C 0.08 2.20 7.21 43.08 0.31 2.51 16 3 C -0.31 -9.70 9.02 22.16 0.20 -9.50 16 4 C 0.26 8.76 6.18 131.43 0.81 9.58 16 5 N -0.49 -17.88 5.37 -688.95 -3.70 -21.58 16 6 C 0.06 2.13 6.60 86.45 0.57 2.70 16 7 C -0.10 -4.43 6.04 31.48 0.19 -4.24 16 8 C 0.05 2.25 2.83 -10.33 -0.03 2.22 16 9 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 10 C -0.53 -28.29 8.36 25.60 0.21 -28.08 16 11 H 0.06 2.99 7.77 -2.91 -0.02 2.97 16 12 C 0.02 0.98 5.32 84.65 0.45 1.43 16 13 N -0.92 -52.19 13.00 21.44 0.28 -51.91 16 14 Si 0.95 42.35 29.54 68.60 2.03 44.37 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 C 0.07 2.84 5.91 86.61 0.51 3.35 16 19 N -0.46 -13.94 7.37 -55.52 -0.41 -14.35 16 20 H 0.44 11.29 8.96 -213.34 -1.91 9.38 16 21 N -0.31 -9.55 12.69 -47.44 -0.60 -10.15 16 22 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.15 4.50 7.94 -2.91 -0.02 4.48 16 26 H 0.06 1.91 7.13 -2.39 -0.02 1.89 16 27 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.05 2.22 7.84 -2.39 -0.02 2.20 16 29 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.05 2.01 7.15 -2.39 -0.02 2.00 16 Total: -1.00 -60.17 269.31 0.77 -59.39 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -0.80 Total: 14.81 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 3.97 Total: -20.59 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -4.43 Total: -97.98 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -60.17 0.77 -59.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.885 kcal (2) G-P(sol) polarization free energy of solvation -60.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds