Wall clock time and date at job start Mon Mar 30 2020 03:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99965 * 2 1 4 4 H 1.48503 * 109.47023 * 239.99346 * 3 2 1 5 5 H 1.48498 * 109.47259 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47311 * 119.99927 * 3 2 1 7 7 C 1.37879 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99900 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00252 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47422 * 300.00317 * 9 7 2 11 11 N 1.46902 * 109.46534 * 60.00100 * 9 7 2 12 12 C 1.50698 * 109.47292 * 180.02562 * 9 7 2 13 13 N 1.34424 * 126.09761 * 285.02762 * 12 9 7 14 14 C 1.30790 * 109.31853 * 179.97438 * 13 12 9 15 15 N 1.34409 * 108.55470 * 359.93927 * 14 13 12 16 16 C 1.33857 * 126.10397 * 105.00140 * 12 9 7 17 17 C 1.50716 * 128.67632 * 0.09593 * 16 12 9 18 18 C 1.53493 * 108.05564 * 164.24720 * 17 16 12 19 19 C 1.53116 * 109.31199 * 48.70205 * 18 17 16 20 20 C 1.46464 * 128.44806 * 180.17555 * 15 14 13 21 21 H 0.96998 * 120.00324 * 0.02562 * 1 2 3 22 22 H 1.00899 * 111.00333 * 296.04470 * 11 9 7 23 23 H 1.00895 * 111.00213 * 60.00087 * 11 9 7 24 24 H 1.08001 * 125.72541 * 179.97438 * 14 13 12 25 25 H 1.09001 * 109.74014 * 283.88417 * 17 16 12 26 26 H 1.09000 * 109.74813 * 44.60758 * 17 16 12 27 27 H 1.09008 * 109.49516 * 168.64500 * 18 17 16 28 28 H 1.08994 * 109.49844 * 288.74680 * 18 17 16 29 29 H 1.08996 * 109.43458 * 50.16392 * 19 18 17 30 30 H 1.09002 * 109.42957 * 170.01983 * 19 18 17 31 31 H 1.08998 * 109.60149 * 42.87493 * 20 15 14 32 32 H 1.08999 * 109.60342 * 282.39873 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6239 -2.5568 0.8902 11 7 0.4069 -2.5772 -1.1993 12 6 2.2302 -3.6446 0.0018 13 7 2.9597 -4.0641 -1.0465 14 6 3.6992 -5.0790 -0.6806 15 7 3.4617 -5.3353 0.6172 16 6 2.5292 -4.4256 1.0470 17 6 1.9834 -4.3701 2.4508 18 6 2.3297 -5.6927 3.1485 19 6 3.8128 -6.0060 2.9325 20 6 4.0555 -6.3723 1.4642 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3004 -1.8577 -1.1912 23 1 0.9652 -2.5259 -2.0381 24 1 4.3858 -5.6200 -1.3149 25 1 2.4383 -3.5392 2.9901 26 1 0.9014 -4.2420 2.4205 27 1 2.1283 -5.6044 4.2162 28 1 1.7234 -6.4952 2.7285 29 1 4.4096 -5.1313 3.1911 30 1 4.1029 -6.8428 3.5679 31 1 5.1271 -6.4306 1.2739 32 1 3.5902 -7.3335 1.2459 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289995.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:10 Heat of formation + Delta-G solvation = 46.956762 kcal Electronic energy + Delta-G solvation = -15217.066027 eV Core-core repulsion = 12791.760205 eV Total energy + Delta-G solvation = -2425.305822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.56057 -36.32803 -34.54795 -32.32078 -30.67781 -29.90629 -27.27646 -25.52399 -23.91896 -22.36527 -21.62934 -19.21427 -18.41404 -16.43022 -16.18458 -15.43106 -14.60850 -14.22677 -13.91360 -13.70991 -13.62809 -13.09214 -13.01933 -12.59008 -11.83397 -11.56079 -11.07796 -10.95690 -10.85547 -10.76062 -10.74600 -10.60544 -9.92812 -9.66500 -8.94844 -8.67847 -8.46828 -7.37953 -6.91487 -5.90517 -4.05772 2.80588 3.33732 3.36131 3.37867 3.42165 4.12384 4.49069 4.61128 4.74925 4.88899 5.24343 5.27046 5.30163 5.38001 5.46118 5.65928 5.77074 5.87926 5.98707 6.21397 6.37134 6.46610 6.55831 6.97544 7.15044 7.58332 7.70915 7.92062 8.07523 8.33574 8.87703 9.03786 9.20595 9.39558 9.65519 11.05519 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035907 B = 0.008421 C = 0.008061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.599269 B = 3324.213237 C = 3472.787485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.063 3.937 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.285 3.715 10 H 0.045 0.955 11 N -0.848 5.848 12 C 0.073 3.927 13 N -0.479 5.479 14 C 0.157 3.843 15 N -0.466 5.466 16 C -0.051 4.051 17 C -0.037 4.037 18 C -0.122 4.122 19 C -0.132 4.132 20 C 0.110 3.890 21 H 0.264 0.736 22 H 0.350 0.650 23 H 0.320 0.680 24 H 0.192 0.808 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.419 -11.800 5.919 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.174 3.826 10 H 0.063 0.937 11 N -0.377 5.377 12 C -0.056 4.056 13 N -0.198 5.198 14 C -0.124 4.124 15 N -0.154 5.154 16 C -0.162 4.162 17 C -0.075 4.075 18 C -0.160 4.160 19 C -0.170 4.170 20 C -0.013 4.013 21 H 0.074 0.926 22 H 0.166 0.834 23 H 0.129 0.871 24 H 0.209 0.791 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.091 -12.171 5.482 14.673 hybrid contribution 1.173 1.457 0.517 1.941 sum 7.264 -10.715 5.999 14.267 Atomic orbital electron populations 1.69738 1.05712 1.26968 1.51434 1.24987 0.94915 0.99046 0.94899 0.86610 0.79555 0.82934 0.78586 1.20344 1.21290 1.20409 1.21791 0.93535 0.91198 1.50347 0.93052 1.17299 0.87420 0.86348 0.91510 0.93679 1.59339 1.18488 1.55456 1.04465 1.20977 0.99055 0.97875 0.87651 1.70379 1.08825 1.10143 1.30429 1.24625 1.04687 0.99768 0.83300 1.45183 1.33599 1.26300 1.10289 1.20693 1.00309 0.97104 0.98120 1.20068 1.01281 0.96805 0.89347 1.21651 0.95176 0.98376 1.00804 1.21835 0.98243 1.02480 0.94395 1.21763 0.98480 0.90370 0.90720 0.92644 0.83425 0.87073 0.79137 0.90520 0.89762 0.91129 0.91802 0.90927 0.90348 0.90054 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 11.54 55.43 0.64 -25.09 16 2 C 0.06 1.77 5.38 -17.82 -0.10 1.68 16 3 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.53 -15.24 8.71 -34.44 -0.30 -15.54 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.29 7.70 3.13 -70.02 -0.22 7.48 16 10 H 0.05 1.28 7.45 -51.93 -0.39 0.89 16 11 N -0.85 -22.54 9.18 -6.65 -0.06 -22.60 16 12 C 0.07 1.78 5.85 -83.00 -0.49 1.30 16 13 N -0.48 -11.19 11.16 -11.08 -0.12 -11.31 16 14 C 0.16 2.89 12.66 -90.71 -1.15 1.75 16 15 N -0.47 -7.94 3.13 -114.10 -0.36 -8.29 16 16 C -0.05 -1.04 6.56 -81.73 -0.54 -1.57 16 17 C -0.04 -0.62 5.85 -27.62 -0.16 -0.78 16 18 C -0.12 -1.50 5.96 -26.42 -0.16 -1.66 16 19 C -0.13 -1.41 5.91 -26.53 -0.16 -1.56 16 20 C 0.11 1.27 7.00 -3.92 -0.03 1.24 16 21 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 22 H 0.35 9.64 7.08 -39.29 -0.28 9.37 16 23 H 0.32 8.56 8.88 -39.29 -0.35 8.21 16 24 H 0.19 2.62 8.06 -52.49 -0.42 2.20 16 25 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 26 H 0.08 1.47 7.84 -51.93 -0.41 1.06 16 27 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 28 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 29 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 265.18 15.07 4.00 4.00 Total: -1.00 -32.24 265.18 -8.56 -40.79 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -4.34 Total: 13.20 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -3.29 Total: -7.67 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: 0.10 Total: -67.30 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.24 -8.56 -40.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289995.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.749 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds