Wall clock time and date at job start Mon Mar 30 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48494 * 109.47202 * 240.00247 * 3 2 1 5 5 H 1.48506 * 109.46657 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46909 * 119.99767 * 3 2 1 7 7 C 1.37875 * 120.00608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47343 * 59.99661 * 9 7 2 11 11 N 1.46905 * 109.47075 * 299.99819 * 9 7 2 12 12 C 1.50697 * 109.47094 * 179.97438 * 9 7 2 13 13 N 1.34436 * 126.10216 * 74.68975 * 12 9 7 14 14 C 1.30786 * 109.32202 * 179.86469 * 13 12 9 15 15 N 1.34409 * 108.54986 * 0.34053 * 14 13 12 16 16 C 1.33864 * 126.10537 * 254.99775 * 12 9 7 17 17 C 1.50709 * 128.67510 * 0.05217 * 16 12 9 18 18 C 1.53494 * 108.05962 * 164.24464 * 17 16 12 19 19 C 1.53120 * 109.30704 * 48.70505 * 18 17 16 20 20 C 1.46480 * 128.44282 * 179.97438 * 15 14 13 21 21 H 0.96991 * 120.00497 * 359.97438 * 1 2 3 22 22 H 1.00901 * 110.99869 * 176.04968 * 11 9 7 23 23 H 1.00896 * 110.99543 * 300.00090 * 11 9 7 24 24 H 1.07995 * 125.72105 * 180.09771 * 14 13 12 25 25 H 1.09002 * 109.74770 * 283.88858 * 17 16 12 26 26 H 1.09001 * 109.74584 * 44.60417 * 17 16 12 27 27 H 1.08995 * 109.49772 * 168.65422 * 18 17 16 28 28 H 1.09000 * 109.49859 * 288.75826 * 18 17 16 29 29 H 1.08996 * 109.42865 * 50.16319 * 19 18 17 30 30 H 1.08994 * 109.43256 * 170.02209 * 19 18 17 31 31 H 1.08995 * 109.60023 * 42.87935 * 20 15 14 32 32 H 1.08997 * 109.59862 * 282.40834 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4062 -2.5778 1.1974 12 6 2.2305 -3.6445 -0.0027 13 7 2.9633 -4.0611 1.0446 14 6 3.6991 -5.0791 0.6802 15 7 3.4606 -5.3365 -0.6172 16 6 2.5304 -4.4250 -1.0481 17 6 1.9879 -4.3670 -2.4530 18 6 2.9154 -5.1923 -3.3556 19 6 3.1720 -6.5553 -2.7067 20 6 4.0486 -6.3788 -1.4620 21 1 -0.4850 0.8399 0.0004 22 1 -0.1577 -3.4145 1.1881 23 1 0.9639 -2.5269 2.0367 24 1 4.3863 -5.6194 1.3144 25 1 0.9821 -4.7863 -2.4770 26 1 1.9647 -3.3328 -2.7964 27 1 2.4440 -5.3353 -4.3279 28 1 3.8615 -4.6662 -3.4832 29 1 2.2215 -7.0048 -2.4194 30 1 3.6797 -7.2060 -3.4186 31 1 4.0913 -7.3169 -0.9087 32 1 5.0537 -6.0825 -1.7620 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261289996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:13 Heat of formation + Delta-G solvation = 53.884689 kcal Electronic energy + Delta-G solvation = -15216.051803 eV Core-core repulsion = 12791.046398 eV Total energy + Delta-G solvation = -2425.005405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.65340 -36.40311 -34.41639 -32.21639 -30.86112 -29.98971 -27.26823 -25.53683 -23.98350 -22.24229 -21.71041 -19.28793 -18.48956 -16.45919 -16.09712 -15.45080 -14.37153 -14.30788 -13.95847 -13.80135 -13.68366 -13.28753 -13.04465 -12.46359 -12.15407 -11.69345 -11.03818 -11.00333 -10.83367 -10.79075 -10.63935 -10.61359 -9.81746 -9.18632 -9.05496 -8.66260 -8.24834 -7.41252 -6.80928 -5.69907 -3.81308 2.70974 3.28140 3.46069 3.49888 3.53586 4.00405 4.54796 4.65156 4.68680 4.83090 5.18050 5.19904 5.31531 5.39819 5.54537 5.60673 5.71155 5.80140 5.92290 6.15886 6.32683 6.40134 6.57826 6.68119 7.05082 7.53988 7.66443 7.90676 8.10626 8.41637 8.80666 8.99435 9.29780 9.39236 9.84823 11.34837 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036337 B = 0.008448 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.372641 B = 3313.491155 C = 3492.368228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.081 3.919 3 Si 0.882 3.118 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.516 4.516 8 H 0.049 0.951 9 C 0.298 3.702 10 H 0.045 0.955 11 N -0.804 5.804 12 C 0.022 3.978 13 N -0.484 5.484 14 C 0.158 3.842 15 N -0.466 5.466 16 C -0.047 4.047 17 C -0.039 4.039 18 C -0.123 4.123 19 C -0.131 4.131 20 C 0.108 3.892 21 H 0.254 0.746 22 H 0.292 0.708 23 H 0.325 0.675 24 H 0.192 0.808 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.301 -13.694 -6.007 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.124 4.124 3 Si 0.710 3.290 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.555 4.555 8 H 0.067 0.933 9 C 0.186 3.814 10 H 0.063 0.937 11 N -0.328 5.328 12 C -0.109 4.109 13 N -0.203 5.203 14 C -0.123 4.123 15 N -0.153 5.153 16 C -0.159 4.159 17 C -0.077 4.077 18 C -0.161 4.161 19 C -0.169 4.169 20 C -0.015 4.015 21 H 0.064 0.936 22 H 0.101 0.899 23 H 0.137 0.863 24 H 0.209 0.791 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.830 -12.645 -5.552 14.990 hybrid contribution 1.407 -0.488 -0.444 1.554 sum 7.237 -13.133 -5.997 16.150 Atomic orbital electron populations 1.70089 1.05527 1.25460 1.47727 1.24924 0.94607 0.98277 0.94631 0.86861 0.79737 0.84013 0.78386 1.20622 1.21442 1.20464 1.20773 0.92091 0.89611 1.53058 0.93320 1.17569 0.85881 0.87122 0.90789 0.93678 1.59265 1.27806 1.40899 1.04858 1.22622 1.00787 0.99461 0.88012 1.70386 1.09036 1.10135 1.30759 1.24620 1.04660 0.99705 0.83338 1.45259 1.33767 1.25975 1.10311 1.20890 1.00044 0.96836 0.98085 1.20098 0.97653 1.01711 0.88250 1.21648 1.00594 0.95026 0.98793 1.21831 1.00374 0.98673 0.95994 1.21785 0.97315 0.90386 0.91988 0.93620 0.89900 0.86327 0.79124 0.90931 0.89064 0.91046 0.91676 0.91041 0.90288 0.90023 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.71 12.77 55.43 0.71 -25.01 16 2 C 0.08 2.37 5.39 -17.82 -0.10 2.28 16 3 Si 0.88 22.39 29.54 -169.99 -5.02 17.37 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.52 -15.13 8.71 -34.44 -0.30 -15.43 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.30 7.91 3.03 -70.01 -0.21 7.69 16 10 H 0.05 1.26 7.69 -51.93 -0.40 0.86 16 11 N -0.80 -20.89 8.53 -6.65 -0.06 -20.95 16 12 C 0.02 0.51 5.84 -82.99 -0.48 0.03 16 13 N -0.48 -10.93 11.16 -11.08 -0.12 -11.05 16 14 C 0.16 2.82 12.66 -90.71 -1.15 1.67 16 15 N -0.47 -7.68 3.13 -114.10 -0.36 -8.03 16 16 C -0.05 -0.92 6.56 -81.73 -0.54 -1.46 16 17 C -0.04 -0.63 5.78 -27.62 -0.16 -0.79 16 18 C -0.12 -1.48 5.96 -26.41 -0.16 -1.64 16 19 C -0.13 -1.33 5.91 -26.54 -0.16 -1.49 16 20 C 0.11 1.21 7.00 -3.92 -0.03 1.18 16 21 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 22 H 0.29 6.89 9.06 -39.29 -0.36 6.53 16 23 H 0.33 8.54 8.89 -39.29 -0.35 8.19 16 24 H 0.19 2.55 8.06 -52.49 -0.42 2.12 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 268.12 15.07 4.04 4.04 Total: -1.00 -33.66 268.12 -8.54 -42.20 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -4.45 Total: 9.39 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -3.28 Total: -7.95 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: 0.17 Total: -65.04 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.66 -8.54 -42.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.080 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds