Wall clock time and date at job start Mon Mar 30 2020 03:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48494 * 109.47202 * 240.00247 * 3 2 1 5 5 H 1.48506 * 109.46657 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46909 * 119.99767 * 3 2 1 7 7 C 1.37875 * 120.00608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47343 * 59.99661 * 9 7 2 11 11 N 1.46905 * 109.47075 * 299.99819 * 9 7 2 12 12 C 1.50697 * 109.47094 * 179.97438 * 9 7 2 13 13 N 1.34436 * 126.10216 * 74.68975 * 12 9 7 14 14 C 1.30786 * 109.32202 * 179.86469 * 13 12 9 15 15 N 1.34409 * 108.54986 * 0.34053 * 14 13 12 16 16 C 1.33864 * 126.10537 * 254.99775 * 12 9 7 17 17 C 1.50709 * 128.67510 * 0.05217 * 16 12 9 18 18 C 1.53494 * 108.05962 * 164.24464 * 17 16 12 19 19 C 1.53120 * 109.30704 * 48.70505 * 18 17 16 20 20 C 1.46480 * 128.44282 * 179.97438 * 15 14 13 21 21 H 0.96991 * 120.00497 * 359.97438 * 1 2 3 22 22 H 1.00901 * 110.99869 * 176.04968 * 11 9 7 23 23 H 1.00896 * 110.99543 * 300.00090 * 11 9 7 24 24 H 1.07995 * 125.72105 * 180.09771 * 14 13 12 25 25 H 1.09002 * 109.74770 * 283.88858 * 17 16 12 26 26 H 1.09001 * 109.74584 * 44.60417 * 17 16 12 27 27 H 1.08995 * 109.49772 * 168.65422 * 18 17 16 28 28 H 1.09000 * 109.49859 * 288.75826 * 18 17 16 29 29 H 1.08996 * 109.42865 * 50.16319 * 19 18 17 30 30 H 1.08994 * 109.43256 * 170.02209 * 19 18 17 31 31 H 1.08995 * 109.60023 * 42.87935 * 20 15 14 32 32 H 1.08997 * 109.59862 * 282.40834 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4062 -2.5778 1.1974 12 6 2.2305 -3.6445 -0.0027 13 7 2.9633 -4.0611 1.0446 14 6 3.6991 -5.0791 0.6802 15 7 3.4606 -5.3365 -0.6172 16 6 2.5304 -4.4250 -1.0481 17 6 1.9879 -4.3670 -2.4530 18 6 2.9154 -5.1923 -3.3556 19 6 3.1720 -6.5553 -2.7067 20 6 4.0486 -6.3788 -1.4620 21 1 -0.4850 0.8399 0.0004 22 1 -0.1577 -3.4145 1.1881 23 1 0.9639 -2.5269 2.0367 24 1 4.3863 -5.6194 1.3144 25 1 0.9821 -4.7863 -2.4770 26 1 1.9647 -3.3328 -2.7964 27 1 2.4440 -5.3353 -4.3279 28 1 3.8615 -4.6662 -3.4832 29 1 2.2215 -7.0048 -2.4194 30 1 3.6797 -7.2060 -3.4186 31 1 4.0913 -7.3169 -0.9087 32 1 5.0537 -6.0825 -1.7620 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261289996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:12 Heat of formation + Delta-G solvation = 30.397053 kcal Electronic energy + Delta-G solvation = -15217.070303 eV Core-core repulsion = 12791.046398 eV Total energy + Delta-G solvation = -2426.023905 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.07046 -37.56845 -36.30573 -33.90679 -32.75264 -31.26325 -28.83726 -27.55842 -25.09028 -24.10906 -22.88544 -20.83950 -19.76999 -18.42795 -17.65781 -16.65313 -16.47020 -16.01604 -15.29414 -15.04072 -14.88024 -14.56637 -14.44253 -14.17912 -14.07563 -13.12420 -12.90227 -12.69821 -12.61754 -12.02587 -11.90194 -11.81063 -11.72047 -11.24615 -10.69340 -10.49165 -10.14361 -9.08208 -8.75036 -7.93265 -6.12891 1.28449 1.41021 1.43999 1.51282 2.08563 2.35786 2.55181 3.28655 3.66118 3.81582 3.86386 3.91689 4.10662 4.40354 4.44285 4.47805 4.59764 4.68515 4.83406 4.90599 4.95924 5.06712 5.15235 5.30595 5.51221 5.62976 5.78655 5.99176 6.26865 6.57881 6.70744 7.13113 7.28897 7.45829 7.57110 9.09988 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036337 B = 0.008448 C = 0.008016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.372641 B = 3313.491155 C = 3492.368228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.034 3.966 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.029 0.971 9 C 0.303 3.697 10 H 0.018 0.982 11 N -0.811 5.811 12 C -0.027 4.027 13 N -0.534 5.534 14 C 0.168 3.832 15 N -0.458 5.458 16 C -0.042 4.042 17 C -0.043 4.043 18 C -0.116 4.116 19 C -0.126 4.126 20 C 0.097 3.903 21 H 0.256 0.744 22 H 0.303 0.697 23 H 0.321 0.679 24 H 0.237 0.763 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.086 -15.545 -7.008 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.169 4.169 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.047 0.953 9 C 0.192 3.808 10 H 0.035 0.965 11 N -0.336 5.336 12 C -0.156 4.156 13 N -0.254 5.254 14 C -0.114 4.114 15 N -0.143 5.143 16 C -0.156 4.156 17 C -0.082 4.082 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.023 4.023 21 H 0.065 0.935 22 H 0.112 0.888 23 H 0.132 0.868 24 H 0.253 0.747 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.632 -14.527 -6.584 17.681 hybrid contribution 0.885 -0.011 -0.145 0.897 sum 8.517 -14.538 -6.728 18.143 Atomic orbital electron populations 1.70207 1.06802 1.26333 1.48393 1.25652 0.95515 1.01561 0.94207 0.85835 0.78585 0.79950 0.78386 1.19726 1.20350 1.20601 1.20971 0.91315 0.91543 1.53257 0.95251 1.17139 0.86205 0.87871 0.89575 0.96451 1.59152 1.28139 1.41737 1.04540 1.22050 1.02639 1.00646 0.90296 1.70222 1.10787 1.12691 1.31694 1.25398 1.03510 0.98215 0.84276 1.45506 1.32373 1.26010 1.10370 1.21119 0.99788 0.96383 0.98356 1.20177 0.99082 1.01218 0.87705 1.21635 0.99323 0.95448 0.99003 1.21867 1.00575 0.97712 0.96177 1.22313 0.97922 0.90032 0.92060 0.93524 0.88758 0.86839 0.74677 0.90601 0.91835 0.88647 0.92059 0.91429 0.86267 0.86723 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.53 12.77 21.45 0.27 -54.25 16 2 C 0.03 2.01 5.39 84.65 0.46 2.47 16 3 Si 0.95 46.89 29.54 68.60 2.03 48.92 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.53 -32.42 8.71 25.60 0.22 -32.20 16 8 H 0.03 1.85 7.74 -2.91 -0.02 1.83 16 9 C 0.30 16.90 3.03 43.42 0.13 17.04 16 10 H 0.02 1.05 7.69 -2.39 -0.02 1.03 16 11 N -0.81 -44.00 8.53 -174.95 -1.49 -45.50 16 12 C -0.03 -1.28 5.84 41.16 0.24 -1.04 16 13 N -0.53 -24.32 11.16 -188.95 -2.11 -26.43 16 14 C 0.17 5.67 12.66 180.38 2.28 7.96 16 15 N -0.46 -14.01 3.13 -514.90 -1.61 -15.63 16 16 C -0.04 -1.65 6.56 40.73 0.27 -1.39 16 17 C -0.04 -1.41 5.78 30.02 0.17 -1.24 16 18 C -0.12 -2.50 5.96 30.80 0.18 -2.32 16 19 C -0.13 -2.00 5.91 30.72 0.18 -1.82 16 20 C 0.10 1.73 7.00 86.47 0.61 2.34 16 21 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 22 H 0.30 14.93 9.06 -89.69 -0.81 14.12 16 23 H 0.32 17.60 8.89 -89.70 -0.80 16.80 16 24 H 0.24 5.40 8.06 -2.91 -0.02 5.38 16 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 29 H 0.07 1.17 8.11 -2.39 -0.02 1.16 16 30 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -76.38 268.12 1.35 -75.03 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.48 Total: 28.06 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.75 Total: -10.21 kcal Atomic # 7 Polarization: -136.86 SS G_CDS: -4.94 Total: -141.80 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -76.38 1.35 -75.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261289996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.424 kcal (2) G-P(sol) polarization free energy of solvation -76.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds