Wall clock time and date at job start Mon Mar 30 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48506 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46990 * 300.00011 * 3 2 1 6 6 H 1.48495 * 109.47317 * 60.00013 * 3 2 1 7 7 C 1.37873 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00189 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99662 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47145 * 60.00566 * 9 7 2 11 11 N 1.46900 * 109.47374 * 300.00121 * 9 7 2 12 12 C 1.50701 * 109.47010 * 180.02562 * 9 7 2 13 13 N 1.30785 * 125.72381 * 74.97426 * 12 9 7 14 14 C 1.34433 * 109.32168 * 179.97438 * 13 12 9 15 15 C 1.33859 * 107.79399 * 0.22632 * 14 13 12 16 16 N 1.34405 * 125.72379 * 255.01860 * 12 9 7 17 17 C 1.46470 * 128.44357 * 0.15604 * 16 12 9 18 18 C 1.53290 * 108.69366 * 162.67795 * 17 16 12 19 19 C 1.53115 * 109.69952 * 50.77038 * 18 17 16 20 20 C 1.50720 * 128.67546 * 180.49754 * 15 14 13 21 21 H 0.97011 * 120.00345 * 359.97438 * 1 2 3 22 22 H 1.00899 * 111.00057 * 300.00613 * 11 9 7 23 23 H 1.00903 * 110.99881 * 63.95640 * 11 9 7 24 24 H 1.08002 * 126.09828 * 179.97438 * 14 13 12 25 25 H 1.09000 * 109.60168 * 282.44477 * 17 16 12 26 26 H 1.09004 * 109.60248 * 42.92057 * 17 16 12 27 27 H 1.08997 * 109.43066 * 170.83871 * 18 17 16 28 28 H 1.08992 * 109.43176 * 290.69964 * 18 17 16 29 29 H 1.09006 * 109.49782 * 50.02979 * 19 18 17 30 30 H 1.09004 * 109.49861 * 170.12889 * 19 18 17 31 31 H 1.08994 * 109.87779 * 44.10950 * 20 15 14 32 32 H 1.08995 * 109.59816 * 283.44521 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2302 -3.6445 -0.0005 13 7 2.9357 -4.0461 1.0249 14 6 3.6985 -5.0906 0.6585 15 6 3.4594 -5.3378 -0.6352 16 7 2.5258 -4.4243 -1.0546 17 6 1.9916 -4.3553 -2.4166 18 6 2.9211 -5.1400 -3.3493 19 6 3.1773 -6.5339 -2.7696 20 6 4.0523 -6.4086 -1.5147 21 1 -0.4851 0.8401 0.0004 22 1 0.9651 -2.5259 2.0381 23 1 -0.3006 -1.8577 1.1910 24 1 4.3851 -5.6309 1.2934 25 1 0.9940 -4.7940 -2.4408 26 1 1.9440 -3.3150 -2.7385 27 1 2.4548 -5.2352 -4.3299 28 1 3.8677 -4.6090 -3.4486 29 1 2.2271 -6.9985 -2.5059 30 1 3.6897 -7.1476 -3.5106 31 1 4.0693 -7.3590 -0.9814 32 1 5.0663 -6.1279 -1.7994 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261297815.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:51 Heat of formation + Delta-G solvation = 43.115065 kcal Electronic energy + Delta-G solvation = -15247.580980 eV Core-core repulsion = 12822.108570 eV Total energy + Delta-G solvation = -2425.472411 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.53320 -36.29912 -34.57088 -32.44130 -31.15764 -29.67891 -27.27372 -25.81828 -23.92184 -22.55552 -21.47277 -19.42306 -18.35277 -16.55789 -16.23323 -15.29156 -14.64494 -14.12538 -13.99962 -13.79695 -13.63274 -13.17918 -12.76287 -12.72100 -12.14318 -11.60838 -11.20692 -11.00495 -10.92773 -10.88112 -10.82946 -10.70983 -10.01147 -9.89681 -8.97252 -8.70867 -8.68101 -7.45434 -7.12243 -6.10960 -4.26967 2.85166 3.21611 3.30311 3.36485 3.52367 4.07377 4.35647 4.71826 4.82175 4.87254 5.12009 5.18671 5.47940 5.57895 5.65835 5.70896 5.76729 5.90210 5.90808 5.97729 6.16399 6.24625 6.44198 6.68889 7.09362 7.34187 7.64826 7.75002 7.95215 8.17255 8.65542 8.92730 9.12988 9.18769 9.45449 10.86334 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036793 B = 0.008476 C = 0.008041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.826166 B = 3302.834142 C = 3481.366031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.066 3.934 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.057 0.943 9 C 0.290 3.710 10 H 0.046 0.954 11 N -0.845 5.845 12 C 0.277 3.723 13 N -0.499 5.499 14 C -0.029 4.029 15 C -0.065 4.065 16 N -0.456 5.456 17 C 0.106 3.894 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.036 4.036 21 H 0.266 0.734 22 H 0.327 0.673 23 H 0.356 0.644 24 H 0.156 0.844 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.629 -9.727 -6.680 12.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.136 4.136 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.076 0.924 9 C 0.178 3.822 10 H 0.064 0.936 11 N -0.376 5.376 12 C 0.013 3.987 13 N -0.217 5.217 14 C -0.177 4.177 15 C -0.178 4.178 16 N -0.140 5.140 17 C -0.017 4.017 18 C -0.169 4.169 19 C -0.160 4.160 20 C -0.075 4.075 21 H 0.076 0.924 22 H 0.137 0.863 23 H 0.173 0.827 24 H 0.173 0.827 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.159 -9.973 -6.314 12.514 hybrid contribution 0.914 1.570 -0.639 1.926 sum 5.073 -8.402 -6.952 12.028 Atomic orbital electron populations 1.69748 1.05805 1.27259 1.50629 1.24983 0.94982 0.99353 0.94326 0.86390 0.80164 0.82938 0.77670 1.19738 1.20908 1.20747 1.21762 0.93832 0.90566 1.51549 0.92434 1.17336 0.87182 0.85283 0.92423 0.93575 1.59224 1.18377 1.55832 1.04172 1.24083 0.98771 0.94740 0.81094 1.70457 1.10291 1.12770 1.28182 1.21721 1.03774 0.99443 0.92779 1.20793 1.01401 0.98974 0.96645 1.45237 1.32819 1.25621 1.10286 1.21837 0.97401 1.02596 0.79897 1.21847 1.00331 0.96188 0.98492 1.21631 1.00523 0.96602 0.97255 1.20046 0.98021 0.95565 0.93825 0.92408 0.86314 0.82688 0.82701 0.90439 0.88803 0.90114 0.91042 0.91615 0.91248 0.90429 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 11.54 55.43 0.64 -23.90 16 2 C 0.07 1.79 5.38 -17.83 -0.10 1.69 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.54 -14.90 8.71 -34.44 -0.30 -15.20 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 9 C 0.29 7.53 3.11 -70.01 -0.22 7.32 16 10 H 0.05 1.24 7.63 -51.93 -0.40 0.85 16 11 N -0.84 -21.61 9.18 -6.65 -0.06 -21.67 16 12 C 0.28 6.69 6.71 -155.76 -1.05 5.64 16 13 N -0.50 -12.14 11.11 -11.02 -0.12 -12.27 16 14 C -0.03 -0.59 11.84 -17.95 -0.21 -0.80 16 15 C -0.06 -1.19 6.57 -81.72 -0.54 -1.73 16 16 N -0.46 -9.22 3.13 -109.42 -0.34 -9.56 16 17 C 0.11 1.71 6.40 -3.91 -0.02 1.68 16 18 C -0.13 -1.59 5.91 -26.52 -0.16 -1.75 16 19 C -0.12 -1.38 5.96 -26.42 -0.16 -1.54 16 20 C -0.04 -0.47 6.31 -27.62 -0.17 -0.65 16 21 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 22 H 0.33 8.44 8.84 -39.29 -0.35 8.09 16 23 H 0.36 9.38 7.08 -39.29 -0.28 9.10 16 24 H 0.16 2.64 8.06 -52.49 -0.42 2.21 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.09 1.59 8.13 -51.93 -0.42 1.16 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 29 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 265.45 15.07 4.00 4.00 Total: -1.00 -30.47 265.45 -8.19 -38.67 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -4.36 Total: 13.81 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.92 Total: -5.33 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: 0.11 Total: -67.40 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.47 -8.19 -38.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297815.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.781 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds