Wall clock time and date at job start Mon Mar 30 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48506 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46990 * 300.00011 * 3 2 1 6 6 H 1.48495 * 109.47317 * 60.00013 * 3 2 1 7 7 C 1.37873 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00189 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99662 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47145 * 60.00566 * 9 7 2 11 11 N 1.46900 * 109.47374 * 300.00121 * 9 7 2 12 12 C 1.50701 * 109.47010 * 180.02562 * 9 7 2 13 13 N 1.30785 * 125.72381 * 74.97426 * 12 9 7 14 14 C 1.34433 * 109.32168 * 179.97438 * 13 12 9 15 15 C 1.33859 * 107.79399 * 0.22632 * 14 13 12 16 16 N 1.34405 * 125.72379 * 255.01860 * 12 9 7 17 17 C 1.46470 * 128.44357 * 0.15604 * 16 12 9 18 18 C 1.53290 * 108.69366 * 162.67795 * 17 16 12 19 19 C 1.53115 * 109.69952 * 50.77038 * 18 17 16 20 20 C 1.50720 * 128.67546 * 180.49754 * 15 14 13 21 21 H 0.97011 * 120.00345 * 359.97438 * 1 2 3 22 22 H 1.00899 * 111.00057 * 300.00613 * 11 9 7 23 23 H 1.00903 * 110.99881 * 63.95640 * 11 9 7 24 24 H 1.08002 * 126.09828 * 179.97438 * 14 13 12 25 25 H 1.09000 * 109.60168 * 282.44477 * 17 16 12 26 26 H 1.09004 * 109.60248 * 42.92057 * 17 16 12 27 27 H 1.08997 * 109.43066 * 170.83871 * 18 17 16 28 28 H 1.08992 * 109.43176 * 290.69964 * 18 17 16 29 29 H 1.09006 * 109.49782 * 50.02979 * 19 18 17 30 30 H 1.09004 * 109.49861 * 170.12889 * 19 18 17 31 31 H 1.08994 * 109.87779 * 44.10950 * 20 15 14 32 32 H 1.08995 * 109.59816 * 283.44521 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2302 -3.6445 -0.0005 13 7 2.9357 -4.0461 1.0249 14 6 3.6985 -5.0906 0.6585 15 6 3.4594 -5.3378 -0.6352 16 7 2.5258 -4.4243 -1.0546 17 6 1.9916 -4.3553 -2.4166 18 6 2.9211 -5.1400 -3.3493 19 6 3.1773 -6.5339 -2.7696 20 6 4.0523 -6.4086 -1.5147 21 1 -0.4851 0.8401 0.0004 22 1 0.9651 -2.5259 2.0381 23 1 -0.3006 -1.8577 1.1910 24 1 4.3851 -5.6309 1.2934 25 1 0.9940 -4.7940 -2.4408 26 1 1.9440 -3.3150 -2.7385 27 1 2.4548 -5.2352 -4.3299 28 1 3.8677 -4.6090 -3.4486 29 1 2.2271 -6.9985 -2.5059 30 1 3.6897 -7.1476 -3.5106 31 1 4.0693 -7.3590 -0.9814 32 1 5.0663 -6.1279 -1.7994 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261297815.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:51 Heat of formation + Delta-G solvation = 22.173670 kcal Electronic energy + Delta-G solvation = -15248.489067 eV Core-core repulsion = 12822.108570 eV Total energy + Delta-G solvation = -2426.380498 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.08745 -37.55443 -36.53356 -33.89569 -33.10618 -31.08570 -28.91464 -27.72669 -25.27394 -24.28957 -22.74671 -21.03428 -19.71888 -18.65209 -17.90068 -16.69188 -16.54861 -15.75739 -15.32248 -14.95725 -14.91590 -14.67871 -14.57548 -14.20413 -13.88043 -13.25617 -12.97509 -12.85251 -12.69903 -12.10419 -11.98811 -11.89405 -11.82516 -11.67571 -10.79063 -10.62550 -10.30068 -9.34243 -8.92083 -8.18018 -6.44044 1.28951 1.33304 1.37518 1.48676 2.05824 2.30187 2.45320 2.99382 3.64816 3.80164 3.85060 3.93057 4.06606 4.35404 4.40805 4.50426 4.61154 4.66219 4.79173 4.89363 4.92481 5.03095 5.12705 5.29699 5.32981 5.57410 5.71808 5.93266 6.10013 6.47528 6.52892 6.81811 7.05536 7.32008 7.46276 8.76587 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036793 B = 0.008476 C = 0.008041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.826166 B = 3302.834142 C = 3481.366031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.028 3.972 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.555 4.555 8 H 0.035 0.965 9 C 0.297 3.703 10 H 0.027 0.973 11 N -0.837 5.837 12 C 0.233 3.767 13 N -0.532 5.532 14 C -0.065 4.065 15 C -0.042 4.042 16 N -0.456 5.456 17 C 0.093 3.907 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.037 4.037 21 H 0.272 0.728 22 H 0.323 0.677 23 H 0.350 0.650 24 H 0.182 0.818 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.739 -10.929 -8.232 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.173 4.173 3 Si 0.788 3.212 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.596 4.596 8 H 0.053 0.947 9 C 0.184 3.816 10 H 0.045 0.955 11 N -0.367 5.367 12 C -0.031 4.031 13 N -0.251 5.251 14 C -0.212 4.212 15 C -0.157 4.157 16 N -0.140 5.140 17 C -0.029 4.029 18 C -0.160 4.160 19 C -0.156 4.156 20 C -0.075 4.075 21 H 0.081 0.919 22 H 0.133 0.867 23 H 0.165 0.835 24 H 0.199 0.801 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.131 0.869 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.256 -11.184 -7.886 14.659 hybrid contribution 0.575 1.881 -0.172 1.975 sum 5.830 -9.303 -8.058 13.619 Atomic orbital electron populations 1.69814 1.06675 1.28317 1.50225 1.25671 0.95859 1.02150 0.93640 0.85436 0.78348 0.79140 0.78231 1.20510 1.19589 1.19987 1.21800 0.92787 0.92155 1.52850 0.94701 1.17058 0.87154 0.85947 0.91402 0.95512 1.59224 1.18141 1.55277 1.04094 1.23570 1.00363 0.96214 0.82955 1.70302 1.11108 1.14332 1.29355 1.22287 1.04837 0.99507 0.94570 1.21701 0.98920 0.98363 0.96682 1.45461 1.32648 1.24975 1.10878 1.22171 0.99081 1.02659 0.78941 1.21884 0.99279 0.96074 0.98793 1.21662 1.00491 0.96226 0.97178 1.20334 0.98783 0.94501 0.93896 0.91875 0.86730 0.83480 0.80079 0.89789 0.90591 0.86867 0.91369 0.91915 0.87423 0.88013 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.55 11.54 21.44 0.25 -50.31 16 2 C 0.03 1.53 5.38 84.66 0.46 1.98 16 3 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.56 -31.93 8.71 25.60 0.22 -31.71 16 8 H 0.03 2.11 7.74 -2.91 -0.02 2.09 16 9 C 0.30 16.05 3.11 43.42 0.14 16.19 16 10 H 0.03 1.52 7.63 -2.39 -0.02 1.50 16 11 N -0.84 -44.49 9.18 -174.95 -1.61 -46.10 16 12 C 0.23 11.60 6.71 138.25 0.93 12.53 16 13 N -0.53 -26.53 11.11 -188.77 -2.10 -28.63 16 14 C -0.07 -2.63 11.84 83.30 0.99 -1.64 16 15 C -0.04 -1.48 6.57 40.73 0.27 -1.22 16 16 N -0.46 -18.46 3.13 -500.10 -1.57 -20.03 16 17 C 0.09 2.97 6.40 86.48 0.55 3.52 16 18 C -0.12 -2.60 5.91 30.73 0.18 -2.42 16 19 C -0.12 -2.14 5.96 30.80 0.18 -1.96 16 20 C -0.04 -0.82 6.31 30.02 0.19 -0.63 16 21 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 22 H 0.32 17.39 8.84 -89.69 -0.79 16.60 16 23 H 0.35 19.04 7.08 -89.69 -0.63 18.40 16 24 H 0.18 5.96 8.06 -2.91 -0.02 5.94 16 25 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.08 2.65 8.13 -2.38 -0.02 2.63 16 27 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 1.52 8.11 -2.39 -0.02 1.50 16 29 H 0.06 1.21 8.12 -2.38 -0.02 1.20 16 30 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -67.88 265.45 0.81 -67.07 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: -0.30 Total: 37.29 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 4.10 Total: -5.36 kcal Atomic # 7 Polarization: -140.04 SS G_CDS: -5.02 Total: -145.06 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.88 0.81 -67.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261297815.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.246 kcal (2) G-P(sol) polarization free energy of solvation -67.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds