Wall clock time and date at job start Mon Mar 30 2020 03:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48504 * 109.47223 * 240.00360 * 3 2 1 5 5 H 1.48497 * 109.47362 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47066 * 120.00231 * 3 2 1 7 7 C 1.37873 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99930 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00254 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47585 * 300.00290 * 9 7 2 11 11 C 1.53004 * 109.47104 * 60.00407 * 9 7 2 12 12 N 1.46902 * 109.47276 * 185.00126 * 11 9 7 13 13 C 1.50697 * 109.47228 * 180.02562 * 9 7 2 14 14 C 1.34568 * 125.98820 * 324.99808 * 13 9 7 15 15 N 1.37198 * 106.83908 * 180.02562 * 14 13 9 16 16 C 1.35130 * 107.16668 * 359.80994 * 15 14 13 17 17 N 1.30696 * 108.55042 * 0.28022 * 16 15 14 18 18 C 1.51574 * 109.76176 * 180.18175 * 16 15 14 19 19 C 1.54532 * 104.35880 * 16.62457 * 18 16 15 20 20 C 1.47000 * 141.59744 * 179.77801 * 15 14 13 21 21 H 0.96998 * 120.00208 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46487 * 304.99938 * 11 9 7 23 23 H 1.08996 * 109.46911 * 64.99937 * 11 9 7 24 24 H 1.00901 * 110.99958 * 56.04327 * 12 11 9 25 25 H 1.00900 * 111.00092 * 179.97438 * 12 11 9 26 26 H 1.08006 * 126.57321 * 0.04270 * 14 13 9 27 27 H 1.09002 * 110.47871 * 257.86890 * 18 16 15 28 28 H 1.09004 * 110.47843 * 135.37977 * 18 16 15 29 29 H 1.09002 * 110.96980 * 92.87766 * 19 18 16 30 30 H 1.08994 * 110.96975 * 216.64277 * 19 18 16 31 31 H 1.09002 * 110.23532 * 43.96380 * 20 15 14 32 32 H 1.08997 * 110.24076 * 281.98851 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3711 -2.5800 -1.2495 12 7 -0.4522 -3.7952 -1.1907 13 6 2.2304 -3.6445 -0.0005 14 6 3.4222 -3.6659 -0.6251 15 7 3.9840 -4.8908 -0.3674 16 6 3.1145 -5.5727 0.4104 17 7 2.0670 -4.8201 0.6216 18 6 3.6817 -6.9401 0.7359 19 6 5.1856 -6.8207 0.4015 20 6 5.1859 -5.6890 -0.6487 21 1 -0.4850 0.8400 0.0004 22 1 -0.2764 -1.7043 -1.2950 23 1 1.0025 -2.6115 -2.1374 24 1 -0.9995 -3.8205 -0.3434 25 1 -1.0432 -3.8714 -2.0050 26 1 3.8536 -2.8711 -1.2156 27 1 3.2128 -7.7047 0.1164 28 1 3.5429 -7.1689 1.7926 29 1 5.7597 -6.5350 1.2829 30 1 5.5652 -7.7490 -0.0253 31 1 6.0800 -5.0749 -0.5409 32 1 5.1340 -6.1074 -1.6538 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261299191.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:58 Heat of formation + Delta-G solvation = 66.872414 kcal Electronic energy + Delta-G solvation = -15027.202225 eV Core-core repulsion = 12602.760010 eV Total energy + Delta-G solvation = -2424.442215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.55668 -36.33850 -34.45079 -32.02038 -31.11688 -29.48429 -26.96966 -26.10730 -23.82791 -21.80014 -20.91029 -19.25506 -18.67884 -16.41724 -16.10931 -15.55058 -14.64800 -14.36770 -13.78376 -13.39012 -13.23591 -13.08442 -12.48575 -12.28491 -12.13179 -11.77696 -11.48933 -11.18830 -10.91947 -10.79068 -10.66369 -9.94182 -9.75399 -9.21744 -8.78710 -8.58279 -8.37199 -7.39950 -7.10811 -5.98207 -4.04444 2.90348 3.32411 3.37087 3.39539 3.42301 4.20127 4.26550 4.45068 4.71388 4.78836 5.01249 5.31183 5.38042 5.56374 5.59492 5.84560 5.93579 5.95572 6.00430 6.54990 6.75444 6.92279 7.17018 7.26636 7.60744 7.77786 7.86485 8.02557 8.11186 8.31216 8.55920 8.60213 8.98022 9.21457 9.59128 11.06632 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035147 B = 0.008351 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.467520 B = 3351.917534 C = 3900.260880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.058 0.942 9 C 0.127 3.873 10 H 0.038 0.962 11 C 0.070 3.930 12 N -0.851 5.851 13 C 0.078 3.922 14 C -0.050 4.050 15 N -0.495 5.495 16 C 0.154 3.846 17 N -0.468 5.468 18 C -0.034 4.034 19 C -0.129 4.129 20 C 0.107 3.893 21 H 0.261 0.739 22 H 0.066 0.934 23 H 0.037 0.963 24 H 0.331 0.669 25 H 0.314 0.686 26 H 0.164 0.836 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.327 -10.768 -1.657 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.077 0.923 9 C 0.107 3.893 10 H 0.056 0.944 11 C -0.060 4.060 12 N -0.378 5.378 13 C -0.051 4.051 14 C -0.178 4.178 15 N -0.183 5.183 16 C -0.107 4.107 17 N -0.188 5.188 18 C -0.073 4.073 19 C -0.167 4.167 20 C -0.015 4.015 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.142 0.858 25 H 0.123 0.877 26 H 0.181 0.819 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.389 -11.141 -1.345 14.011 hybrid contribution 0.445 1.941 -0.642 2.092 sum 8.834 -9.201 -1.986 12.909 Atomic orbital electron populations 1.69868 1.05870 1.26588 1.50695 1.24957 0.94880 0.99052 0.95080 0.86618 0.79557 0.83022 0.78571 1.20320 1.21290 1.20286 1.21142 0.93006 0.89940 1.50590 0.92347 1.17138 0.90441 0.87040 0.94640 0.94395 1.21948 0.95931 0.89985 0.98157 1.58955 1.29490 1.43727 1.05651 1.21258 0.94341 0.93290 0.96200 1.22138 0.97684 0.87361 1.10582 1.46357 1.17260 1.13465 1.41195 1.24091 0.90012 0.96328 1.00300 1.69680 1.21989 1.03351 1.23784 1.20455 0.93095 0.90646 1.03091 1.22685 0.96739 0.98294 0.99024 1.22128 0.87241 0.92505 0.99636 0.92910 0.91644 0.94412 0.85765 0.87717 0.81871 0.89567 0.89363 0.89937 0.88872 0.90186 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 11.29 55.43 0.63 -24.77 16 2 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.12 8.25 -34.44 -0.28 -14.40 16 8 H 0.06 1.59 6.82 -52.48 -0.36 1.24 16 9 C 0.13 3.41 2.37 -92.93 -0.22 3.19 16 10 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 11 C 0.07 1.76 6.00 -3.82 -0.02 1.74 16 12 N -0.85 -18.81 9.34 -10.37 -0.10 -18.90 16 13 C 0.08 1.93 5.74 -82.94 -0.48 1.46 16 14 C -0.05 -1.11 10.91 -16.45 -0.18 -1.29 16 15 N -0.49 -9.20 3.61 -112.24 -0.41 -9.60 16 16 C 0.15 3.02 8.60 -154.74 -1.33 1.69 16 17 N -0.47 -11.23 11.24 -6.78 -0.08 -11.30 16 18 C -0.03 -0.43 6.85 -26.65 -0.18 -0.62 16 19 C -0.13 -1.24 7.17 -25.20 -0.18 -1.42 16 20 C 0.11 1.32 7.78 -3.04 -0.02 1.30 16 21 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 22 H 0.07 1.77 5.95 -51.93 -0.31 1.46 16 23 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.33 7.29 8.99 -39.29 -0.35 6.93 16 25 H 0.31 6.05 9.08 -39.29 -0.36 5.70 16 26 H 0.16 3.47 7.65 -52.48 -0.40 3.07 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 267.24 15.07 4.03 4.03 Total: -1.00 -32.50 267.24 -8.24 -40.74 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.30 Total: 10.29 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.99 Total: -6.75 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: 0.05 Total: -64.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.50 -8.24 -40.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261299191.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.608 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds