Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46981 * 2 1 4 4 C 1.50698 * 109.47068 * 240.00031 * 2 1 3 5 5 H 1.07999 * 119.99853 * 240.00054 * 4 2 1 6 6 C 1.37874 * 120.00365 * 59.99823 * 4 2 1 7 7 N 1.31522 * 120.00057 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00240 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46944 * 90.00543 * 8 6 4 10 10 H 1.48499 * 109.47090 * 209.99958 * 8 6 4 11 11 H 1.48493 * 109.47090 * 330.00325 * 8 6 4 12 12 N 1.46499 * 109.46876 * 119.99872 * 2 1 3 13 13 C 1.39670 * 120.00079 * 274.99981 * 12 2 1 14 14 C 1.38929 * 120.07513 * 0.02562 * 13 12 2 15 15 C 1.38085 * 119.92665 * 179.97438 * 14 13 12 16 16 C 1.38306 * 120.07269 * 359.97438 * 15 14 13 17 17 C 1.38262 * 120.14952 * 0.04493 * 16 15 14 18 18 C 1.50705 * 119.96069 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.46810 * 89.99660 * 18 17 16 20 20 C 1.38127 * 120.07652 * 359.97438 * 17 16 15 21 21 H 1.09007 * 109.46926 * 60.00007 * 1 2 3 22 22 H 1.08999 * 109.47714 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47523 * 300.00273 * 1 2 3 24 24 H 0.96994 * 120.00219 * 179.97438 * 7 6 4 25 25 H 0.96996 * 119.99819 * 95.00175 * 12 2 1 26 26 H 1.07998 * 120.03900 * 0.25670 * 14 13 12 27 27 H 1.07995 * 119.96098 * 180.02562 * 15 14 13 28 28 H 1.07998 * 119.92297 * 180.02562 * 16 15 14 29 29 H 1.09003 * 109.46905 * 209.99754 * 18 17 16 30 30 H 1.09001 * 109.46952 * 329.99888 * 18 17 16 31 31 H 0.96700 * 113.99781 * 179.97438 * 19 18 17 32 32 H 1.08001 * 120.03609 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6035 8 14 2.3225 -1.1196 -4.0079 9 1 1.3447 -2.1616 -4.4124 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7566 -3.7119 12 7 2.0183 -0.6906 1.1962 13 6 2.1516 0.0062 2.3993 14 6 1.8212 1.3541 2.4636 15 6 1.9538 2.0398 3.6548 16 6 2.4144 1.3862 4.7832 17 6 2.7445 0.0449 4.7226 18 6 3.2465 -0.6630 5.9547 19 8 2.1398 -1.2129 6.6723 20 6 2.6147 -0.6470 3.5342 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7095 1.1617 -3.4844 25 1 2.2490 -1.6317 1.1526 26 1 1.4568 1.8639 1.5840 27 1 1.6967 3.0875 3.7054 28 1 2.5167 1.9248 5.7137 29 1 3.9245 -1.4648 5.6621 30 1 3.7758 0.0463 6.5910 31 1 2.3892 -1.6845 7.4788 32 1 2.8723 -1.6947 3.4877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306205005.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = -30.874438 kcal Electronic energy + Delta-G solvation = -14509.397755 eV Core-core repulsion = 12048.424168 eV Total energy + Delta-G solvation = -2460.973587 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.03646 -36.77972 -35.34686 -32.76765 -31.01720 -29.95874 -27.18235 -25.66791 -25.19037 -21.81530 -21.46189 -19.40324 -17.37867 -17.20266 -16.04886 -15.39377 -15.14216 -14.68098 -13.88873 -13.80239 -13.09181 -13.00559 -12.71577 -12.45336 -11.81290 -11.66072 -11.20933 -11.02315 -10.98860 -10.68622 -10.53315 -10.25071 -10.06530 -9.99636 -9.31739 -9.02236 -8.50390 -8.32818 -6.51375 -6.16137 -4.24374 1.88015 2.24100 3.22663 3.29537 3.32329 4.23038 4.26606 4.57875 4.78146 5.16256 5.19553 5.21590 5.48801 5.57904 5.74676 5.97164 6.15659 6.40437 6.50243 6.72614 6.93191 7.01589 7.04062 7.08619 7.16964 7.34799 7.54448 7.64439 7.68592 7.86047 8.07602 8.38074 8.71804 8.92195 9.42850 10.89674 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050841 B = 0.005969 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.599298 B = 4689.574170 C = 4954.935527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.267 3.733 3 H 0.040 0.960 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.726 5.726 13 C 0.235 3.765 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.186 4.186 17 C -0.052 4.052 18 C 0.120 3.880 19 O -0.566 6.566 20 C -0.198 4.198 21 H 0.089 0.911 22 H 0.028 0.972 23 H 0.013 0.987 24 H 0.264 0.736 25 H 0.389 0.611 26 H 0.126 0.874 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.373 0.627 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.425 -1.186 12.526 13.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.164 3.836 3 H 0.058 0.942 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.348 5.348 13 C 0.126 3.874 14 C -0.219 4.219 15 C -0.094 4.094 16 C -0.207 4.207 17 C -0.053 4.053 18 C 0.043 3.957 19 O -0.371 6.371 20 C -0.221 4.221 21 H 0.108 0.892 22 H 0.047 0.953 23 H 0.033 0.967 24 H 0.074 0.926 25 H 0.222 0.778 26 H 0.144 0.856 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.219 0.781 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.931 -0.686 11.641 12.024 hybrid contribution 0.678 -1.042 -0.485 1.335 sum 3.610 -1.729 11.156 11.852 Atomic orbital electron populations 1.22186 0.98850 0.99552 1.00576 1.18718 0.90667 0.93441 0.80740 0.94225 1.21214 1.32112 1.13193 0.90312 0.92170 1.24877 0.94801 0.94973 0.99056 1.69879 1.36134 1.22536 1.23913 0.86440 0.79207 0.79301 0.82134 1.20541 1.21031 1.19876 1.45569 1.69588 1.12021 1.07576 1.17999 0.91213 0.91617 0.86613 1.20852 1.08502 0.93547 0.98969 1.20790 0.97363 0.98870 0.92382 1.20505 1.07544 0.94389 0.98223 1.19131 0.99526 0.93710 0.92889 1.20989 0.87790 0.95758 0.91156 1.86626 1.34250 1.75135 1.41110 1.20344 1.10125 0.99378 0.92296 0.89230 0.95274 0.96744 0.92582 0.77805 0.85576 0.86802 0.87439 0.93229 0.93203 0.78077 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.20 37.16 0.34 -3.37 16 2 C 0.27 6.61 2.25 -69.08 -0.16 6.45 16 3 H 0.04 1.07 6.49 -51.93 -0.34 0.73 16 4 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.50 11.32 55.43 0.63 -23.88 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.73 -15.67 5.24 -53.29 -0.28 -15.95 16 13 C 0.23 4.75 6.64 -83.79 -0.56 4.19 16 14 C -0.20 -3.87 8.85 -39.38 -0.35 -4.21 16 15 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 16 C -0.19 -3.01 9.70 -39.55 -0.38 -3.39 16 17 C -0.05 -0.85 5.51 -104.65 -0.58 -1.43 16 18 C 0.12 1.52 7.17 36.01 0.26 1.78 16 19 O -0.57 -7.31 13.64 -35.23 -0.48 -7.79 16 20 C -0.20 -3.56 9.55 -39.38 -0.38 -3.94 16 21 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 22 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.01 0.31 7.70 -51.93 -0.40 -0.09 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.39 7.87 8.55 -40.82 -0.35 7.52 16 26 H 0.13 2.63 6.11 -52.49 -0.32 2.31 16 27 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.37 2.69 9.12 45.56 0.42 3.10 16 32 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 272.55 15.07 4.11 4.11 Total: -1.00 -29.47 272.55 -7.01 -36.48 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -3.38 Total: 9.69 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.59 Total: -18.34 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.35 Total: -39.83 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.48 Total: -7.79 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.47 -7.01 -36.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306205005.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.607 kcal (2) G-P(sol) polarization free energy of solvation -29.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds