Wall clock time and date at job start Mon Mar 30 2020 02:30:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09000 * 109.46981 * 2 1
4 4 C 1.50698 * 109.47068 * 240.00031 * 2 1 3
5 5 H 1.07999 * 119.99853 * 240.00054 * 4 2 1
6 6 C 1.37874 * 120.00365 * 59.99823 * 4 2 1
7 7 N 1.31522 * 120.00057 * 0.02562 * 6 4 2
8 8 Si 1.86799 * 120.00240 * 179.97438 * 6 4 2
9 9 H 1.48505 * 109.46944 * 90.00543 * 8 6 4
10 10 H 1.48499 * 109.47090 * 209.99958 * 8 6 4
11 11 H 1.48493 * 109.47090 * 330.00325 * 8 6 4
12 12 N 1.46499 * 109.46876 * 119.99872 * 2 1 3
13 13 C 1.39670 * 120.00079 * 274.99981 * 12 2 1
14 14 C 1.38929 * 120.07513 * 0.02562 * 13 12 2
15 15 C 1.38085 * 119.92665 * 179.97438 * 14 13 12
16 16 C 1.38306 * 120.07269 * 359.97438 * 15 14 13
17 17 C 1.38262 * 120.14952 * 0.04493 * 16 15 14
18 18 C 1.50705 * 119.96069 * 179.97438 * 17 16 15
19 19 O 1.42902 * 109.46810 * 89.99660 * 18 17 16
20 20 C 1.38127 * 120.07652 * 359.97438 * 17 16 15
21 21 H 1.09007 * 109.46926 * 60.00007 * 1 2 3
22 22 H 1.08999 * 109.47714 * 179.97438 * 1 2 3
23 23 H 1.08996 * 109.47523 * 300.00273 * 1 2 3
24 24 H 0.96994 * 120.00219 * 179.97438 * 7 6 4
25 25 H 0.96996 * 119.99819 * 95.00175 * 12 2 1
26 26 H 1.07998 * 120.03900 * 0.25670 * 14 13 12
27 27 H 1.07995 * 119.96098 * 180.02562 * 15 14 13
28 28 H 1.07998 * 119.92297 * 180.02562 * 16 15 14
29 29 H 1.09003 * 109.46905 * 209.99754 * 18 17 16
30 30 H 1.09001 * 109.46952 * 329.99888 * 18 17 16
31 31 H 0.96700 * 113.99781 * 179.97438 * 19 18 17
32 32 H 1.08001 * 120.03609 * 180.02562 * 20 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.6532 -1.5885 -1.1313
6 6 1.6992 -0.2394 -2.4827
7 7 0.9435 0.8302 -2.6035
8 14 2.3225 -1.1196 -4.0079
9 1 1.3447 -2.1616 -4.4124
10 1 2.4872 -0.1403 -5.1120
11 1 3.6308 -1.7566 -3.7119
12 7 2.0183 -0.6906 1.1962
13 6 2.1516 0.0062 2.3993
14 6 1.8212 1.3541 2.4636
15 6 1.9538 2.0398 3.6548
16 6 2.4144 1.3862 4.7832
17 6 2.7445 0.0449 4.7226
18 6 3.2465 -0.6630 5.9547
19 8 2.1398 -1.2129 6.6723
20 6 2.6147 -0.6470 3.5342
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3634 -1.0276 -0.0005
23 1 -0.3634 0.5138 0.8899
24 1 0.7095 1.1617 -3.4844
25 1 2.2490 -1.6317 1.1526
26 1 1.4568 1.8639 1.5840
27 1 1.6967 3.0875 3.7054
28 1 2.5167 1.9248 5.7137
29 1 3.9245 -1.4648 5.6621
30 1 3.7758 0.0463 6.5910
31 1 2.3892 -1.6845 7.4788
32 1 2.8723 -1.6947 3.4877
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306205005.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:30:30
Heat of formation + Delta-G solvation = -30.874438 kcal
Electronic energy + Delta-G solvation = -14509.397755 eV
Core-core repulsion = 12048.424168 eV
Total energy + Delta-G solvation = -2460.973587 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 221.116 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-39.03646 -36.77972 -35.34686 -32.76765 -31.01720 -29.95874 -27.18235 -25.66791
-25.19037 -21.81530 -21.46189 -19.40324 -17.37867 -17.20266 -16.04886 -15.39377
-15.14216 -14.68098 -13.88873 -13.80239 -13.09181 -13.00559 -12.71577 -12.45336
-11.81290 -11.66072 -11.20933 -11.02315 -10.98860 -10.68622 -10.53315 -10.25071
-10.06530 -9.99636 -9.31739 -9.02236 -8.50390 -8.32818 -6.51375 -6.16137
-4.24374 1.88015 2.24100 3.22663 3.29537 3.32329 4.23038 4.26606
4.57875 4.78146 5.16256 5.19553 5.21590 5.48801 5.57904 5.74676
5.97164 6.15659 6.40437 6.50243 6.72614 6.93191 7.01589 7.04062
7.08619 7.16964 7.34799 7.54448 7.64439 7.68592 7.86047 8.07602
8.38074 8.71804 8.92195 9.42850 10.89674
Molecular weight = 221.12amu
Principal moments of inertia in cm(-1)
A = 0.050841 B = 0.005969 C = 0.005650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 550.599298 B = 4689.574170 C = 4954.935527
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.267 3.733
3 H 0.040 0.960
4 C -0.530 4.530
5 H 0.060 0.940
6 C 0.066 3.934
7 N -0.887 5.887
8 Si 0.902 3.098
9 H -0.279 1.279
10 H -0.285 1.285
11 H -0.274 1.274
12 N -0.726 5.726
13 C 0.235 3.765
14 C -0.196 4.196
15 C -0.075 4.075
16 C -0.186 4.186
17 C -0.052 4.052
18 C 0.120 3.880
19 O -0.566 6.566
20 C -0.198 4.198
21 H 0.089 0.911
22 H 0.028 0.972
23 H 0.013 0.987
24 H 0.264 0.736
25 H 0.389 0.611
26 H 0.126 0.874
27 H 0.114 0.886
28 H 0.107 0.893
29 H 0.049 0.951
30 H 0.050 0.950
31 H 0.373 0.627
32 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.425 -1.186 12.526 13.040
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.164 3.836
3 H 0.058 0.942
4 C -0.568 4.568
5 H 0.078 0.922
6 C -0.137 4.137
7 N -0.525 5.525
8 Si 0.729 3.271
9 H -0.205 1.205
10 H -0.210 1.210
11 H -0.199 1.199
12 N -0.348 5.348
13 C 0.126 3.874
14 C -0.219 4.219
15 C -0.094 4.094
16 C -0.207 4.207
17 C -0.053 4.053
18 C 0.043 3.957
19 O -0.371 6.371
20 C -0.221 4.221
21 H 0.108 0.892
22 H 0.047 0.953
23 H 0.033 0.967
24 H 0.074 0.926
25 H 0.222 0.778
26 H 0.144 0.856
27 H 0.132 0.868
28 H 0.126 0.874
29 H 0.068 0.932
30 H 0.068 0.932
31 H 0.219 0.781
32 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 2.931 -0.686 11.641 12.024
hybrid contribution 0.678 -1.042 -0.485 1.335
sum 3.610 -1.729 11.156 11.852
Atomic orbital electron populations
1.22186 0.98850 0.99552 1.00576 1.18718 0.90667 0.93441 0.80740
0.94225 1.21214 1.32112 1.13193 0.90312 0.92170 1.24877 0.94801
0.94973 0.99056 1.69879 1.36134 1.22536 1.23913 0.86440 0.79207
0.79301 0.82134 1.20541 1.21031 1.19876 1.45569 1.69588 1.12021
1.07576 1.17999 0.91213 0.91617 0.86613 1.20852 1.08502 0.93547
0.98969 1.20790 0.97363 0.98870 0.92382 1.20505 1.07544 0.94389
0.98223 1.19131 0.99526 0.93710 0.92889 1.20989 0.87790 0.95758
0.91156 1.86626 1.34250 1.75135 1.41110 1.20344 1.10125 0.99378
0.92296 0.89230 0.95274 0.96744 0.92582 0.77805 0.85576 0.86802
0.87439 0.93229 0.93203 0.78077 0.87041
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.72 9.20 37.16 0.34 -3.37 16
2 C 0.27 6.61 2.25 -69.08 -0.16 6.45 16
3 H 0.04 1.07 6.49 -51.93 -0.34 0.73 16
4 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16
5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16
6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16
7 N -0.89 -24.50 11.32 55.43 0.63 -23.88 16
8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16
9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16
12 N -0.73 -15.67 5.24 -53.29 -0.28 -15.95 16
13 C 0.23 4.75 6.64 -83.79 -0.56 4.19 16
14 C -0.20 -3.87 8.85 -39.38 -0.35 -4.21 16
15 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16
16 C -0.19 -3.01 9.70 -39.55 -0.38 -3.39 16
17 C -0.05 -0.85 5.51 -104.65 -0.58 -1.43 16
18 C 0.12 1.52 7.17 36.01 0.26 1.78 16
19 O -0.57 -7.31 13.64 -35.23 -0.48 -7.79 16
20 C -0.20 -3.56 9.55 -39.38 -0.38 -3.94 16
21 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16
22 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16
23 H 0.01 0.31 7.70 -51.93 -0.40 -0.09 16
24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16
25 H 0.39 7.87 8.55 -40.82 -0.35 7.52 16
26 H 0.13 2.63 6.11 -52.49 -0.32 2.31 16
27 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16
28 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16
29 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16
30 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16
31 H 0.37 2.69 9.12 45.56 0.42 3.10 16
32 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16
LS Contribution 272.55 15.07 4.11 4.11
Total: -1.00 -29.47 272.55 -7.01 -36.48
By element:
Atomic # 1 Polarization: 13.07 SS G_CDS: -3.38 Total: 9.69 kcal
Atomic # 6 Polarization: -15.75 SS G_CDS: -2.59 Total: -18.34 kcal
Atomic # 7 Polarization: -40.18 SS G_CDS: 0.35 Total: -39.83 kcal
Atomic # 8 Polarization: -7.31 SS G_CDS: -0.48 Total: -7.79 kcal
Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal
Total LS contribution 4.11 Total: 4.11 kcal
Total: -29.47 -7.01 -36.48 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306205005.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.607 kcal
(2) G-P(sol) polarization free energy of solvation -29.469 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.862 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds